mRNA_H-paniculata_contig33188.8903.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33188.8903.1
Unique NamemRNA_H-paniculata_contig33188.8903.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig33188.8903.1 vs. uniprot
Match: A0A8F0F735_9PHAE (Photosystem II reaction center protein K n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F735_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 5.940e-19
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:    1 MVILFLNKLPDLYLIFSPVVDILPIVPVLFLLLAFLWQASVGFR 132
            MVILFLNKLP+LYLIFSPVVDILP+VPVLFLLLAFLWQASVGFR
Sbjct:    1 MVILFLNKLPELYLIFSPVVDILPVVPVLFLLLAFLWQASVGFR 44
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BLAST of mRNA_H-paniculata_contig33188.8903.1 vs. uniprot
Match: A0A2I4Q318_9PHAE (Photosystem II reaction center protein K n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q318_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.850e-17
Identity = 37/44 (84.09%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:    1 MVILFLNKLPDLYLIFSPVVDILPIVPVLFLLLAFLWQASVGFR 132
            MV++FLNKLP+LY+IFSP+VDILP++PVLFLLLAFLWQASVGFR
Sbjct:    1 MVVVFLNKLPELYVIFSPLVDILPVIPVLFLLLAFLWQASVGFR 44
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BLAST of mRNA_H-paniculata_contig33188.8903.1 vs. uniprot
Match: A0A1L2F1W9_9PHAE (Photosystem II reaction center protein K n=3 Tax=Fucales TaxID=3009 RepID=A0A1L2F1W9_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 6.510e-14
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:   16 LNKLPDLYLIFSPVVDILPIVPVLFLLLAFLWQASVGFR 132
            L KLP+LY I+SP+VDILPI+PVLFLLLAFLWQASVGFR
Sbjct:    6 LTKLPELYAIYSPIVDILPIIPVLFLLLAFLWQASVGFR 44
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BLAST of mRNA_H-paniculata_contig33188.8903.1 vs. uniprot
Match: A0A7S6U9V7_9STRA (Photosystem II reaction center protein K n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9V7_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 9.260e-14
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 MVILFLNKLPDLYLIFSPVVDILPIVPVLFLLLAFLWQASVGFR 132
            M I+ ++KLPD Y IFSP++DILPIVPVLFLLLAF+WQA+VGFR
Sbjct:    1 MEIILISKLPDAYTIFSPIIDILPIVPVLFLLLAFVWQAAVGFR 44
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BLAST of mRNA_H-paniculata_contig33188.8903.1 vs. uniprot
Match: A0A4D6UYV7_9FLOR (Photosystem II reaction center protein K n=4 Tax=Rhodomelaceae TaxID=2803 RepID=A0A4D6UYV7_9FLOR)

HSP 1 Score: 65.1 bits (157), Expect = 3.860e-13
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    7 ILFLNKLPDLYLIFSPVVDILPIVPVLFLLLAFLWQASVGFR 132
            I+FL KLPD YL+F P+VDILPI+PV FLLLAF+WQA++GFR
Sbjct:    4 IVFLTKLPDTYLLFRPLVDILPIIPVFFLLLAFVWQAAIGFR 45
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BLAST of mRNA_H-paniculata_contig33188.8903.1 vs. uniprot
Match: A0A4D6WPC3_9FLOR (Photosystem II reaction center protein K n=1 Tax=Compsothamnion thuyoides TaxID=536591 RepID=A0A4D6WPC3_9FLOR)

HSP 1 Score: 64.7 bits (156), Expect = 5.480e-13
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:   16 LNKLPDLYLIFSPVVDILPIVPVLFLLLAFLWQASVGFR 132
            LNKLPD Y+IF P+VDILPI+PV FLLLAF+WQA+VGFR
Sbjct:    7 LNKLPDAYIIFRPLVDILPIIPVFFLLLAFVWQAAVGFR 45
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BLAST of mRNA_H-paniculata_contig33188.8903.1 vs. uniprot
Match: A0A1Z1MAU6_9FLOR (Photosystem II reaction center protein K n=9 Tax=Rhodomelaceae TaxID=2803 RepID=A0A1Z1MAU6_9FLOR)

HSP 1 Score: 64.3 bits (155), Expect = 7.790e-13
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:   10 LFLNKLPDLYLIFSPVVDILPIVPVLFLLLAFLWQASVGFR 132
            LFL KLPD Y++F P+VDILPI+PV FLLLAF+WQA++GFR
Sbjct:    5 LFLTKLPDAYILFRPLVDILPIIPVFFLLLAFVWQAAIGFR 45
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BLAST of mRNA_H-paniculata_contig33188.8903.1 vs. uniprot
Match: A0A024B2Z0_KLEFL (Photosystem II reaction center protein K n=3 Tax=Klebsormidium TaxID=3174 RepID=A0A024B2Z0_KLEFL)

HSP 1 Score: 64.7 bits (156), Expect = 7.910e-13
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    7 ILFLNKLPDLYLIFSPVVDILPIVPVLFLLLAFLWQASVGFR 132
            ILFL KLP+ Y IF P+VD+LP++PVLFLLLAF+WQASV FR
Sbjct:   20 ILFLGKLPEAYAIFDPIVDVLPVIPVLFLLLAFVWQASVSFR 61
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BLAST of mRNA_H-paniculata_contig33188.8903.1 vs. uniprot
Match: A0A4D6WSL2_9FLOR (Photosystem II reaction center protein K n=1 Tax=Crouania attenuata TaxID=42002 RepID=A0A4D6WSL2_9FLOR)

HSP 1 Score: 63.9 bits (154), Expect = 1.110e-12
Identity = 30/42 (71.43%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    7 ILFLNKLPDLYLIFSPVVDILPIVPVLFLLLAFLWQASVGFR 132
            IL ++KLPD YLIF P+VDILP++PV FLLLAF+WQA++GFR
Sbjct:    4 ILIISKLPDAYLIFRPLVDILPVIPVFFLLLAFVWQAAIGFR 45
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BLAST of mRNA_H-paniculata_contig33188.8903.1 vs. uniprot
Match: A0A1Y9TMC7_9RHOD (Photosystem II reaction center protein K n=1 Tax=Bulboplastis apyrenoidosa TaxID=1070855 RepID=A0A1Y9TMC7_9RHOD)

HSP 1 Score: 63.9 bits (154), Expect = 1.110e-12
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:   10 LFLNKLPDLYLIFSPVVDILPIVPVLFLLLAFLWQASVGFR 132
            L LNKLP++Y IF P++DILP+VPV FLLLAF+WQA+VGFR
Sbjct:    5 LLLNKLPEIYTIFKPLIDILPVVPVFFLLLAFVWQAAVGFR 45
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33188.8903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F735_9PHAE5.940e-1995.45Photosystem II reaction center protein K n=1 Tax=P... [more]
A0A2I4Q318_9PHAE2.850e-1784.09Photosystem II reaction center protein K n=1 Tax=D... [more]
A0A1L2F1W9_9PHAE6.510e-1484.62Photosystem II reaction center protein K n=3 Tax=F... [more]
A0A7S6U9V7_9STRA9.260e-1475.00Photosystem II reaction center protein K n=1 Tax=S... [more]
A0A4D6UYV7_9FLOR3.860e-1373.81Photosystem II reaction center protein K n=4 Tax=R... [more]
A0A4D6WPC3_9FLOR5.480e-1379.49Photosystem II reaction center protein K n=1 Tax=C... [more]
A0A1Z1MAU6_9FLOR7.790e-1373.17Photosystem II reaction center protein K n=9 Tax=R... [more]
A0A024B2Z0_KLEFL7.910e-1373.81Photosystem II reaction center protein K n=3 Tax=K... [more]
A0A4D6WSL2_9FLOR1.110e-1271.43Photosystem II reaction center protein K n=1 Tax=C... [more]
A0A1Y9TMC7_9RHOD1.110e-1273.17Photosystem II reaction center protein K n=1 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33188contigH-paniculata_contig33188:2258..2392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.8
Seed ortholog evalue4.8e-08
Seed eggNOG ortholog313612.L8106_17160
Preferred namepsbK
KEGG koko:K02712
KEGG Pathwayko00195,ko01100,map00195,map01100
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0009521,GO:0009523,GO:0009579,GO:0016020,GO:0030075,GO:0030096,GO:0032991,GO:0034357,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044425,GO:0044436,GO:0044444,GO:0044459,GO:0044464,GO:0071944,GO:0098796,GO:0098797
EggNOG free text desc.One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation
EggNOG OGs1G9DE@1117,1HD3P@1150,2E3TA@1,32YQR@2
COG Functional cat.S
BiGG ReactioniJN678.psbK
Best tax levelOscillatoriales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons1
Model size135
Cds size135
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930026.2970586-CDS-H-paniculata_contig33188:2257..23921622930026.2970586-CDS-H-paniculata_contig33188:2257..2392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33188 2258..2392 +
1691481115.8227737-CDS-H-paniculata_contig33188:2257..23921691481115.8227737-CDS-H-paniculata_contig33188:2257..2392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33188 2258..2392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33188.8903.1prot_H-paniculata_contig33188.8903.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33188 2258..2392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33188.8903.1

>prot_H-paniculata_contig33188.8903.1 ID=prot_H-paniculata_contig33188.8903.1|Name=mRNA_H-paniculata_contig33188.8903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
MVILFLNKLPDLYLIFSPVVDILPIVPVLFLLLAFLWQASVGFR*
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mRNA from alignment at H-paniculata_contig33188:2258..2392+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33188.8903.1 ID=mRNA_H-paniculata_contig33188.8903.1|Name=mRNA_H-paniculata_contig33188.8903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at H-paniculata_contig33188:2258..2392+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAATACTATTCCTGAATAAGTTGCCAGACCTGTACTTAATTTTTAG
TCCAGTTGTAGATATATTACCAATTGTTCCAGTTCTTTTTTTATTGCTTG
CATTTCTTTGGCAAGCTTCAGTCGGTTTTCGCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig33188:2258..2392+

>mRNA_H-paniculata_contig33188.8903.1 ID=mRNA_H-paniculata_contig33188.8903.1|Name=mRNA_H-paniculata_contig33188.8903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig33188:2258..2392+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAATACTATTCCTGAATAAGTTGCCAGACCTGTACTTAATTTTTAG
TCCAGTTGTAGATATATTACCAATTGTTCCAGTTCTTTTTTTATTGCTTG
CATTTCTTTGGCAAGCTTCAGTCGGTTTTCGCTAAATGGTAATACTATTC
CTGAATAAGTTGCCAGACCTGTACTTAATTTTTAGTCCAGTTGTAGATAT
ATTACCAATTGTTCCAGTTCTTTTTTTATTGCTTGCATTTCTTTGGCAAG
CTTCAGTCGGTTTTCGCTAA
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