mRNA_H-paniculata_contig3313.8894.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3313.8894.1
Unique NamemRNA_H-paniculata_contig3313.8894.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3313.8894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3313contigH-paniculata_contig3313:13970..14811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size842
Cds size441
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930025.392396-UTR-H-paniculata_contig3313:13969..143701622930025.392396-UTR-H-paniculata_contig3313:13969..14370Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3313 13970..14370 +
1691481115.4632838-UTR-H-paniculata_contig3313:13969..143701691481115.4632838-UTR-H-paniculata_contig3313:13969..14370Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3313 13970..14370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930025.4069798-CDS-H-paniculata_contig3313:14370..148111622930025.4069798-CDS-H-paniculata_contig3313:14370..14811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3313 14371..14811 +
1691481115.4733717-CDS-H-paniculata_contig3313:14370..148111691481115.4733717-CDS-H-paniculata_contig3313:14370..14811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3313 14371..14811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3313.8894.1prot_H-paniculata_contig3313.8894.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3313 14371..14811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3313.8894.1

>prot_H-paniculata_contig3313.8894.1 ID=prot_H-paniculata_contig3313.8894.1|Name=mRNA_H-paniculata_contig3313.8894.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
MLVPDRSGEGNMTHKHALMGVDAVMYHAEGGTTASQRKEQNKRTIRIFSN
ASVEIIQKVFLLMPAMEGRKCLVVCRNRAITRVAESTSTKFKVYLAEYRQ
TRCKFYCVSCHMNKWFLVHRHEHIYMCRSLSVSLPFMHDFFEMEFLI
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mRNA from alignment at H-paniculata_contig3313:13970..14811+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3313.8894.1 ID=mRNA_H-paniculata_contig3313.8894.1|Name=mRNA_H-paniculata_contig3313.8894.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=842bp|location=Sequence derived from alignment at H-paniculata_contig3313:13970..14811+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGTCATTGGTGTCTTGTTGCTTGCCGACGTTGAGCTGTCGTTAAGCCTG
AACGTTTAGCTTTCGCCAGCAGCAAGCCGACTGGGACTAGGGAGTTTGAT
GGATGATAAATGTAGATCTTCGAAGAGGAGAAGCGTTAGACTATTTCGTG
ATTGATGTAACGACTTCGGCGTCCCTGCGTAGCCGCTAACGTGCGGGCGT
TGGGTGCCCTCGTCGGAGATGACCTAAAAAGCCGAACCCTGGAACCGCTT
TCCACGTTTTCCTCGCCTATAGTTTTTGCGAAAGCACGATGAAGAAATCT
GAGATGTGGTGGTCGCCGAAGCCGCCGGAATTTTGACCCTCAGATGTGAT
GGACGCCCGGGTTACAATATCTCAGCCCCATTTGATTCGTCAACCGTTTA
GATGTTAGTTCCAGATCGAAGCGGTGAAGGAAACATGACGCACAAGCATG
CACTAATGGGTGTTGATGCAGTAATGTATCATGCGGAGGGAGGTACGACC
GCTTCTCAGCGCAAGGAGCAAAACAAGCGGACAATCCGAATCTTCTCTAA
CGCATCAGTGGAAATAATACAAAAAGTGTTTTTACTTATGCCGGCCATGG
AGGGGCGCAAATGCCTTGTGGTATGCAGGAATCGGGCTATTACTAGGGTC
GCCGAATCTACAAGCACTAAATTCAAGGTCTATTTAGCGGAGTACCGTCA
AACTCGATGCAAGTTTTATTGTGTTAGTTGCCACATGAATAAATGGTTCC
TTGTACACAGGCATGAGCACATTTACATGTGCCGATCACTGAGTGTCAGC
TTGCCATTTATGCATGACTTTTTTGAAATGGAGTTTCTAATC
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Coding sequence (CDS) from alignment at H-paniculata_contig3313:13970..14811+

>mRNA_H-paniculata_contig3313.8894.1 ID=mRNA_H-paniculata_contig3313.8894.1|Name=mRNA_H-paniculata_contig3313.8894.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig3313:13970..14811+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTAGTTCCAGATCGAAGCGGTGAAGGAAACATGACGCACAAGCATGC
ACTAATGGGTGTTGATGCAGTAATGTATCATGCGGAGGGAGGTACGACCG
CTTCTCAGCGCAAGGAGCAAAACAAGCGGACAATCCGAATCTTCTCTAAC
GCATCAGTGGAAATAATACAAAAAGTGTTTTTACTTATGCCGGCCATGGA
GGGGCGCAAATGCCTTGTGGTATGCAGGAATCGGGCTATTACTAGGGTCG
CCGAATCTACAAGCACTAAATTCAAGGTCTATTTAGCGGAGTACCGTCAA
ACTCGATGCAAGTTTTATTGTGTTAGTTGCCACATGAATAAATGGTTCCT
TGTACACAGGCATGAGCACATTTACATGTGCCGATCACTGAGTGTCAGCT
TGCCATTTATGCATGACTTTTTTGAAATGGAGTTTCTAATCATGTTAGTT
CCAGATCGAAGCGGTGAAGGAAACATGACGCACAAGCATGCACTAATGGG
TGTTGATGCAGTAATGTATCATGCGGAGGGAGGTACGACCGCTTCTCAGC
GCAAGGAGCAAAACAAGCGGACAATCCGAATCTTCTCTAACGCATCAGTG
GAAATAATACAAAAAGTGTTTTTACTTATGCCGGCCATGGAGGGGCGCAA
ATGCCTTGTGGTATGCAGGAATCGGGCTATTACTAGGGTCGCCGAATCTA
CAAGCACTAAATTCAAGGTCTATTTAGCGGAGTACCGTCAAACTCGATGC
AAGTTTTATTGTGTTAGTTGCCACATGAATAAATGGTTCCTTGTACACAG
GCATGAGCACATTTACATGTGCCGATCACTGAGTGTCAGCTTGCCATTTA
TGCATGACTTTTTTGAAATGGAGTTTCTAATC
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