mRNA_H-paniculata_contig33127.8892.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33127.8892.1
Unique NamemRNA_H-paniculata_contig33127.8892.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33127.8892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33127contigH-paniculata_contig33127:908..1258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size214
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930025.3366947-CDS-H-paniculata_contig33127:907..10111622930025.3366947-CDS-H-paniculata_contig33127:907..1011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33127 908..1011 +
1691481115.4471455-CDS-H-paniculata_contig33127:907..10111691481115.4471455-CDS-H-paniculata_contig33127:907..1011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33127 908..1011 +
1622930025.3533897-CDS-H-paniculata_contig33127:1148..12571622930025.3533897-CDS-H-paniculata_contig33127:1148..1257Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33127 1149..1257 +
1691481115.455647-CDS-H-paniculata_contig33127:1148..12571691481115.455647-CDS-H-paniculata_contig33127:1148..1257Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33127 1149..1257 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33127.8892.1prot_H-paniculata_contig33127.8892.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33127 908..1257 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33127.8892.1

>prot_H-paniculata_contig33127.8892.1 ID=prot_H-paniculata_contig33127.8892.1|Name=mRNA_H-paniculata_contig33127.8892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
IRKGPGDSVRAEKMVLPQSWSFALSFLSDLSGGERHPVPSTLAEDQVPSQ
QMSSAEVPVKAREDLLSEWRR
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mRNA from alignment at H-paniculata_contig33127:908..1258+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33127.8892.1 ID=mRNA_H-paniculata_contig33127.8892.1|Name=mRNA_H-paniculata_contig33127.8892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig33127:908..1258+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCGCAAGGGTCCGGGTGACTCCGTTCGGGCAGAGAAAATGGTGTTGCC
ACAAAGTTGGAGCTTTGCCCTGTCGTTTCTCAGCGACCTGAGCGGGGGCG
AAAGGTGTGTGCGCGTTTGTTGATGGTTAGGTGATATCTTTGAATGGGGC
TCCCAGCTGTGGCTTTGATGATAGTTTCACGTGTTCGTGTTGTAACCTCG
AATACTCATGGGTAGTCATCACTTTCCACCACCATTTGCAGGCACCCTGT
CCCTTCAACGTTGGCGGAAGATCAAGTGCCATCACAGCAGATGTCGAGCG
CCGAAGTCCCCGTCAAGGCGCGCGAGGACCTGCTAAGTGAGTGGAGGCGT
G
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Coding sequence (CDS) from alignment at H-paniculata_contig33127:908..1258+

>mRNA_H-paniculata_contig33127.8892.1 ID=mRNA_H-paniculata_contig33127.8892.1|Name=mRNA_H-paniculata_contig33127.8892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig33127:908..1258+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCGCAAGGGTCCGGGTGACTCCGTTCGGGCAGAGAAAATGGTGTTGCC
ACAAAGTTGGAGCTTTGCCCTGTCGTTTCTCAGCGACCTGAGCGGGGGCG
AAAGATCCGCAAGGGTCCGGGTGACTCCGTTCGGGCAGAGAAAATGGTGT
TGCCACAAAGTTGGAGCTTTGCCCTGTCGTTTCTCAGCGACCTGAGCGGG
GGCGAAAGGCACCCTGTCCCTTCAACGTTGGCGGAAGATCAAGTGCCATC
ACAGCAGATGTCGAGCGCCGAAGTCCCCGTCAAGGCGCGCGAGGACCTGC
TAAGTGAGTGGAGGCGTGCACCCTGTCCCTTCAACGTTGGCGGAAGATCA
AGTGCCATCACAGCAGATGTCGAGCGCCGAAGTCCCCGTCAAGGCGCGCG
AGGACCTGCTAAGTGAGTGGAGGCGT
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