mRNA_H-paniculata_contig33108.8889.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33108.8889.1
Unique NamemRNA_H-paniculata_contig33108.8889.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig33108.8889.1 vs. uniprot
Match: D8LKI7_ECTSI (White-brown-complex ABC transporter family (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKI7_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.970e-39
Identity = 74/102 (72.55%), Postives = 84/102 (82.35%), Query Frame = 1
Query:   10 PSETALNRPINKNDKKQAERVMSTLRQLAKDGHTVVCSIHQPRSSIFRMFDDLLVLSEGQVMFLGPAKLATSYFRSMGYSMPANTNPGEFAIDVVSVDYTSK 315
            PS    + P    D  QAERVM+TLRQLA+DGHTV+CSIHQPRSSIF MFDD+L+LSEG+VMF GPAK   SYFRS GY MP+NTNPG+FA+DVVSVDYTSK
Sbjct:  188 PSLIFCDEPTTGLDAFQAERVMATLRQLAQDGHTVICSIHQPRSSIFGMFDDVLLLSEGRVMFQGPAKRIGSYFRSKGYPMPSNTNPGDFAVDVVSVDYTSK 289          
BLAST of mRNA_H-paniculata_contig33108.8889.1 vs. uniprot
Match: A0A6H5K880_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K880_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 2.900e-38
Identity = 67/85 (78.82%), Postives = 78/85 (91.76%), Query Frame = 1
Query:   61 AERVMSTLRQLAKDGHTVVCSIHQPRSSIFRMFDDLLVLSEGQVMFLGPAKLATSYFRSMGYSMPANTNPGEFAIDVVSVDYTSK 315
            AERVM+TLRQLA+DGHTV+CSIHQPRSSI+ MFDD+L+LSEG+VMF GPAK   SYFRS GY MP++TNPG+FA+DVVSVDYTSK
Sbjct:  154 AERVMATLRQLAQDGHTVICSIHQPRSSIYGMFDDVLLLSEGRVMFQGPAKRIGSYFRSKGYPMPSHTNPGDFAVDVVSVDYTSK 238          
BLAST of mRNA_H-paniculata_contig33108.8889.1 vs. uniprot
Match: A0A383W642_TETOB (ABC transporter domain-containing protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W642_TETOB)

HSP 1 Score: 120 bits (302), Expect = 1.390e-29
Identity = 59/104 (56.73%), Postives = 77/104 (74.04%), Query Frame = 1
Query:    1 IKFPSETALNRPINKNDKKQAERVMSTLRQLAKDGHTVVCSIHQPRSSIFRMFDDLLVLSEGQVMFLGPAKLATSYFRSMGYSMPANTNPGEFAIDVVSVDYTS 312
            I  PS   L+ P    D  QAE+V++TL+QLA  GHTVVCSIHQPRSSIF +FDDLL+LSEG+ ++ GPA+ A  YF  +G+S PA+ NP EF  D++S+DY+S
Sbjct:  249 ISSPSLLFLDEPTTGLDSFQAEKVVATLKQLASAGHTVVCSIHQPRSSIFGLFDDLLLLSEGRCVYSGPAEEALPYFEQLGHSCPAHYNPAEFVADLISIDYSS 352          
BLAST of mRNA_H-paniculata_contig33108.8889.1 vs. uniprot
Match: I0Z251_COCSC (ABC transporter domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z251_COCSC)

HSP 1 Score: 119 bits (298), Expect = 4.510e-29
Identity = 57/100 (57.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:   25 LNRPINKNDKKQAERVMSTLRQLAKDGHTVVCSIHQPRSSIFRMFDDLLVLSEGQVMFLGPAKLATSYFRSMGYSMPANTNPGEFAIDVVSVDYTSKVSK 324
            L+ P    D  QAE+VM TL+ LA +G TVVCSIHQPRSSIF MFDDLL+LSEGQ+++ GPAK   S+F S+GY +PAN NP EF  D++S+D ++  ++
Sbjct:  236 LDEPTTGLDSFQAEKVMQTLKDLANEGKTVVCSIHQPRSSIFSMFDDLLLLSEGQIVYSGPAKGVISHFESLGYPIPANYNPAEFIADLISIDSSAATAE 335          
BLAST of mRNA_H-paniculata_contig33108.8889.1 vs. uniprot
Match: A0A453DQQ0_AEGTS (ABC transporter domain-containing protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453DQQ0_AEGTS)

HSP 1 Score: 115 bits (289), Expect = 5.670e-29
Identity = 57/108 (52.78%), Postives = 75/108 (69.44%), Query Frame = 1
Query:    1 IKFPSETALNRPINKNDKKQAERVMSTLRQLAKDGHTVVCSIHQPRSSIFRMFDDLLVLSEGQVMFLGPAKLAT-SYFRSMGYSMPANTNPGEFAIDVVSVDYTSKVS 321
            I  PS    + P    D  QAE+VM TLRQLA+DGHTV+CSIHQPR S++  FDD+++LSEG+V+++GPAK     YF S+GY  P + NP EF  D++S DY+S  S
Sbjct:  164 IASPSVIFADEPTTGLDAFQAEKVMETLRQLAEDGHTVICSIHQPRGSVYSKFDDIVLLSEGEVVYMGPAKEEPLKYFASLGYQCPDHENPAEFLADLISTDYSSAES 271          
BLAST of mRNA_H-paniculata_contig33108.8889.1 vs. uniprot
Match: A0A7J7Q7J4_9CHLO (ABC-2 type transporter-domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q7J4_9CHLO)

HSP 1 Score: 119 bits (297), Expect = 6.410e-29
Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    1 IKFPSETALNRPINKNDKKQAERVMSTLRQLAKDGHTVVCSIHQPRSSIFRMFDDLLVLSEGQVMFLGPAKLATSYFRSMGYSMPANTNPGEFAIDVVSVDYTS 312
            I  PS   L+ P    D  QAE+V++TL++LA  GHTVVCSIHQPRSSIF MFDDLL+LSEG+ ++ GPA  A  YF  +G++ P N NP EF  D++S+DY+S
Sbjct:  251 ISSPSLLFLDEPTTGLDSFQAEKVVATLKELASAGHTVVCSIHQPRSSIFGMFDDLLLLSEGRCVYSGPADEALPYFEQLGHACPRNYNPAEFVADLISIDYSS 354          
BLAST of mRNA_H-paniculata_contig33108.8889.1 vs. uniprot
Match: A0A843VVE1_COLES (ABC transporter domain-containing protein (Fragment) n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843VVE1_COLES)

HSP 1 Score: 116 bits (291), Expect = 1.400e-28
Identity = 57/108 (52.78%), Postives = 76/108 (70.37%), Query Frame = 1
Query:    1 IKFPSETALNRPINKNDKKQAERVMSTLRQLAKDGHTVVCSIHQPRSSIFRMFDDLLVLSEGQVMFLGPAKLAT-SYFRSMGYSMPANTNPGEFAIDVVSVDYTSKVS 321
            I  PS    + P    D  QAE+VM TL+QLA+DGHTV+CSIHQPR S++  FDD+++LSEG V+++GPAK    SYF + GY+ P + NP EF  D++S+DYTS  S
Sbjct:  239 IASPSVIFADEPTTGLDAFQAEKVMETLQQLAQDGHTVICSIHQPRGSVYAKFDDIILLSEGAVVYMGPAKEEPLSYFANFGYNCPDHVNPAEFLADLISIDYTSAES 346          
BLAST of mRNA_H-paniculata_contig33108.8889.1 vs. uniprot
Match: A0A833R2I4_9POAL (ABC transporter G family member 7 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R2I4_9POAL)

HSP 1 Score: 117 bits (294), Expect = 1.600e-28
Identity = 59/108 (54.63%), Postives = 76/108 (70.37%), Query Frame = 1
Query:    1 IKFPSETALNRPINKNDKKQAERVMSTLRQLAKDGHTVVCSIHQPRSSIFRMFDDLLVLSEGQVMFLGPAKLAT-SYFRSMGYSMPANTNPGEFAIDVVSVDYTSKVS 321
            I  PS    + P    D  QAE+VM TLRQLA+DGHTV+CSIHQPRSS++  FDD+++LSEG V++ GPAK    SYF ++GY  P + NP EF  D++SVDY+S  S
Sbjct:  220 IASPSVIFADEPTTGIDAFQAEKVMETLRQLAEDGHTVICSIHQPRSSVYAKFDDIILLSEGLVVYAGPAKEEPLSYFATLGYECPEHVNPAEFLADLISVDYSSTSS 327          
BLAST of mRNA_H-paniculata_contig33108.8889.1 vs. uniprot
Match: A0A8J5V418_ZIZPA (AAA domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5V418_ZIZPA)

HSP 1 Score: 116 bits (291), Expect = 4.050e-28
Identity = 58/108 (53.70%), Postives = 76/108 (70.37%), Query Frame = 1
Query:    1 IKFPSETALNRPINKNDKKQAERVMSTLRQLAKDGHTVVCSIHQPRSSIFRMFDDLLVLSEGQVMFLGPAKLAT-SYFRSMGYSMPANTNPGEFAIDVVSVDYTSKVS 321
            I  PS    + P    D  QAE+VM TLRQLA+DGHTV+CSIHQPR S++  FDD+ +LSEG+V+++GPAK    +YF S+GY  P + NP EF  D++SVDY+S  S
Sbjct:  217 IASPSIIFADEPTTGLDAFQAEKVMETLRQLAEDGHTVICSIHQPRGSVYGKFDDIALLSEGEVVYMGPAKEEPLTYFASLGYQCPDHVNPAEFLADLISVDYSSTES 324          
BLAST of mRNA_H-paniculata_contig33108.8889.1 vs. uniprot
Match: A0A8J9REU9_9CHLO (Protein white n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9REU9_9CHLO)

HSP 1 Score: 116 bits (290), Expect = 5.530e-28
Identity = 56/100 (56.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:   25 LNRPINKNDKKQAERVMSTLRQLAKDGHTVVCSIHQPRSSIFRMFDDLLVLSEGQVMFLGPAKLATSYFRSMGYSMPANTNPGEFAIDVVSVDYTSKVSK 324
            L+ P    D  QAE+VM TL+ LA DG TVVCSIHQPRSSIF MFDDLL+LSEG +++ GPAK   S+F S+G+ +PAN NP EF  D++S++ +S  ++
Sbjct:  237 LDEPTTGLDSFQAEKVMQTLKDLAMDGKTVVCSIHQPRSSIFSMFDDLLLLSEGSIIYSGPAKGVISHFESLGHPIPANYNPAEFIADLISINSSSSTAE 336          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33108.8889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKI7_ECTSI1.970e-3972.55White-brown-complex ABC transporter family (Partia... [more]
A0A6H5K880_9PHAE2.900e-3878.82ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A383W642_TETOB1.390e-2956.73ABC transporter domain-containing protein n=2 Tax=... [more]
I0Z251_COCSC4.510e-2957.00ABC transporter domain-containing protein n=1 Tax=... [more]
A0A453DQQ0_AEGTS5.670e-2952.78ABC transporter domain-containing protein n=2 Tax=... [more]
A0A7J7Q7J4_9CHLO6.410e-2955.77ABC-2 type transporter-domain-containing protein n... [more]
A0A843VVE1_COLES1.400e-2852.78ABC transporter domain-containing protein (Fragmen... [more]
A0A833R2I4_9POAL1.600e-2854.63ABC transporter G family member 7 n=1 Tax=Carex li... [more]
A0A8J5V418_ZIZPA4.050e-2853.70AAA domain-containing protein n=1 Tax=Zizania palu... [more]
A0A8J9REU9_9CHLO5.530e-2856.00Protein white n=1 Tax=Coccomyxa sp. Obi TaxID=2315... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33108contigH-paniculata_contig33108:2066..2392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.4
Seed ortholog evalue9.5e-34
Seed eggNOG ortholog2880.D8LKI7
KEGG koko:K21396
KEGG TC3.A.1.204
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006810,GO:0008150,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0015399,GO:0015405,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0031224,GO:0031967,GO:0031975,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0061@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930024.7371905-CDS-H-paniculata_contig33108:2065..23921622930024.7371905-CDS-H-paniculata_contig33108:2065..2392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33108 2066..2392 +
1691481115.1598227-CDS-H-paniculata_contig33108:2065..23921691481115.1598227-CDS-H-paniculata_contig33108:2065..2392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33108 2066..2392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33108.8889.1prot_H-paniculata_contig33108.8889.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33108 2066..2392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33108.8889.1

>prot_H-paniculata_contig33108.8889.1 ID=prot_H-paniculata_contig33108.8889.1|Name=mRNA_H-paniculata_contig33108.8889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
IKFPSETALNRPINKNDKKQAERVMSTLRQLAKDGHTVVCSIHQPRSSIF
RMFDDLLVLSEGQVMFLGPAKLATSYFRSMGYSMPANTNPGEFAIDVVSV
DYTSKVSK*
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mRNA from alignment at H-paniculata_contig33108:2066..2392+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33108.8889.1 ID=mRNA_H-paniculata_contig33108.8889.1|Name=mRNA_H-paniculata_contig33108.8889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at H-paniculata_contig33108:2066..2392+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCAAGTTCCCATCAGAAACCGCCCTCAATCGTCCAATTAACAAAAACGA TAAAAAACAGGCCGAGCGCGTCATGAGCACGCTTCGCCAGCTGGCTAAGG ACGGCCACACGGTCGTGTGTTCGATCCATCAGCCGAGAAGCTCCATCTTC CGCATGTTCGACGACCTCCTCGTTCTAAGCGAGGGCCAGGTCATGTTTCT TGGTCCGGCGAAGCTGGCGACCTCCTACTTTCGGTCCATGGGGTACTCCA TGCCCGCGAACACCAACCCGGGCGAGTTCGCCATCGACGTAGTCTCCGTA GATTACACCTCTAAGGTAAGTAAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig33108:2066..2392+

>mRNA_H-paniculata_contig33108.8889.1 ID=mRNA_H-paniculata_contig33108.8889.1|Name=mRNA_H-paniculata_contig33108.8889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig33108:2066..2392+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCAAGTTCCCATCAGAAACCGCCCTCAATCGTCCAATTAACAAAAACGA
TAAAAAACAGGCCGAGCGCGTCATGAGCACGCTTCGCCAGCTGGCTAAGG
ACGGCCACACGGTCGTGTGTTCGATCCATCAGCCGAGAAGCTCCATCTTC
CGCATGTTCGACGACCTCCTCGTTCTAAGCGAGGGCCAGGTCATGTTTCT
TGGTCCGGCGAAGCTGGCGACCTCCTACTTTCGGTCCATGGGGTACTCCA
TGCCCGCGAACACCAACCCGGGCGAGTTCGCCATCGACGTAGTCTCCGTA
GATTACACCTCTAAGGTAAGTAAATGAATCAAGTTCCCATCAGAAACCGC
CCTCAATCGTCCAATTAACAAAAACGATAAAAAACAGGCCGAGCGCGTCA
TGAGCACGCTTCGCCAGCTGGCTAAGGACGGCCACACGGTCGTGTGTTCG
ATCCATCAGCCGAGAAGCTCCATCTTCCGCATGTTCGACGACCTCCTCGT
TCTAAGCGAGGGCCAGGTCATGTTTCTTGGTCCGGCGAAGCTGGCGACCT
CCTACTTTCGGTCCATGGGGTACTCCATGCCCGCGAACACCAACCCGGGC
GAGTTCGCCATCGACGTAGTCTCCGTAGATTACACCTCTAAGGTAAGTAA
ATGA
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