mRNA_H-paniculata_contig33108.8889.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig33108.8889.1 vs. uniprot
Match: D8LKI7_ECTSI (White-brown-complex ABC transporter family (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKI7_ECTSI) HSP 1 Score: 148 bits (373), Expect = 1.970e-39 Identity = 74/102 (72.55%), Postives = 84/102 (82.35%), Query Frame = 1
Query: 10 PSETALNRPINKNDKKQAERVMSTLRQLAKDGHTVVCSIHQPRSSIFRMFDDLLVLSEGQVMFLGPAKLATSYFRSMGYSMPANTNPGEFAIDVVSVDYTSK 315
PS + P D QAERVM+TLRQLA+DGHTV+CSIHQPRSSIF MFDD+L+LSEG+VMF GPAK SYFRS GY MP+NTNPG+FA+DVVSVDYTSK
Sbjct: 188 PSLIFCDEPTTGLDAFQAERVMATLRQLAQDGHTVICSIHQPRSSIFGMFDDVLLLSEGRVMFQGPAKRIGSYFRSKGYPMPSNTNPGDFAVDVVSVDYTSK 289
BLAST of mRNA_H-paniculata_contig33108.8889.1 vs. uniprot
Match: A0A6H5K880_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K880_9PHAE) HSP 1 Score: 141 bits (356), Expect = 2.900e-38 Identity = 67/85 (78.82%), Postives = 78/85 (91.76%), Query Frame = 1
Query: 61 AERVMSTLRQLAKDGHTVVCSIHQPRSSIFRMFDDLLVLSEGQVMFLGPAKLATSYFRSMGYSMPANTNPGEFAIDVVSVDYTSK 315
AERVM+TLRQLA+DGHTV+CSIHQPRSSI+ MFDD+L+LSEG+VMF GPAK SYFRS GY MP++TNPG+FA+DVVSVDYTSK
Sbjct: 154 AERVMATLRQLAQDGHTVICSIHQPRSSIYGMFDDVLLLSEGRVMFQGPAKRIGSYFRSKGYPMPSHTNPGDFAVDVVSVDYTSK 238
BLAST of mRNA_H-paniculata_contig33108.8889.1 vs. uniprot
Match: A0A383W642_TETOB (ABC transporter domain-containing protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W642_TETOB) HSP 1 Score: 120 bits (302), Expect = 1.390e-29 Identity = 59/104 (56.73%), Postives = 77/104 (74.04%), Query Frame = 1
Query: 1 IKFPSETALNRPINKNDKKQAERVMSTLRQLAKDGHTVVCSIHQPRSSIFRMFDDLLVLSEGQVMFLGPAKLATSYFRSMGYSMPANTNPGEFAIDVVSVDYTS 312
I PS L+ P D QAE+V++TL+QLA GHTVVCSIHQPRSSIF +FDDLL+LSEG+ ++ GPA+ A YF +G+S PA+ NP EF D++S+DY+S
Sbjct: 249 ISSPSLLFLDEPTTGLDSFQAEKVVATLKQLASAGHTVVCSIHQPRSSIFGLFDDLLLLSEGRCVYSGPAEEALPYFEQLGHSCPAHYNPAEFVADLISIDYSS 352
BLAST of mRNA_H-paniculata_contig33108.8889.1 vs. uniprot
Match: I0Z251_COCSC (ABC transporter domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z251_COCSC) HSP 1 Score: 119 bits (298), Expect = 4.510e-29 Identity = 57/100 (57.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query: 25 LNRPINKNDKKQAERVMSTLRQLAKDGHTVVCSIHQPRSSIFRMFDDLLVLSEGQVMFLGPAKLATSYFRSMGYSMPANTNPGEFAIDVVSVDYTSKVSK 324
L+ P D QAE+VM TL+ LA +G TVVCSIHQPRSSIF MFDDLL+LSEGQ+++ GPAK S+F S+GY +PAN NP EF D++S+D ++ ++
Sbjct: 236 LDEPTTGLDSFQAEKVMQTLKDLANEGKTVVCSIHQPRSSIFSMFDDLLLLSEGQIVYSGPAKGVISHFESLGYPIPANYNPAEFIADLISIDSSAATAE 335
BLAST of mRNA_H-paniculata_contig33108.8889.1 vs. uniprot
Match: A0A453DQQ0_AEGTS (ABC transporter domain-containing protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453DQQ0_AEGTS) HSP 1 Score: 115 bits (289), Expect = 5.670e-29 Identity = 57/108 (52.78%), Postives = 75/108 (69.44%), Query Frame = 1
Query: 1 IKFPSETALNRPINKNDKKQAERVMSTLRQLAKDGHTVVCSIHQPRSSIFRMFDDLLVLSEGQVMFLGPAKLAT-SYFRSMGYSMPANTNPGEFAIDVVSVDYTSKVS 321
I PS + P D QAE+VM TLRQLA+DGHTV+CSIHQPR S++ FDD+++LSEG+V+++GPAK YF S+GY P + NP EF D++S DY+S S
Sbjct: 164 IASPSVIFADEPTTGLDAFQAEKVMETLRQLAEDGHTVICSIHQPRGSVYSKFDDIVLLSEGEVVYMGPAKEEPLKYFASLGYQCPDHENPAEFLADLISTDYSSAES 271
BLAST of mRNA_H-paniculata_contig33108.8889.1 vs. uniprot
Match: A0A7J7Q7J4_9CHLO (ABC-2 type transporter-domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q7J4_9CHLO) HSP 1 Score: 119 bits (297), Expect = 6.410e-29 Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = 1
Query: 1 IKFPSETALNRPINKNDKKQAERVMSTLRQLAKDGHTVVCSIHQPRSSIFRMFDDLLVLSEGQVMFLGPAKLATSYFRSMGYSMPANTNPGEFAIDVVSVDYTS 312
I PS L+ P D QAE+V++TL++LA GHTVVCSIHQPRSSIF MFDDLL+LSEG+ ++ GPA A YF +G++ P N NP EF D++S+DY+S
Sbjct: 251 ISSPSLLFLDEPTTGLDSFQAEKVVATLKELASAGHTVVCSIHQPRSSIFGMFDDLLLLSEGRCVYSGPADEALPYFEQLGHACPRNYNPAEFVADLISIDYSS 354
BLAST of mRNA_H-paniculata_contig33108.8889.1 vs. uniprot
Match: A0A843VVE1_COLES (ABC transporter domain-containing protein (Fragment) n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843VVE1_COLES) HSP 1 Score: 116 bits (291), Expect = 1.400e-28 Identity = 57/108 (52.78%), Postives = 76/108 (70.37%), Query Frame = 1
Query: 1 IKFPSETALNRPINKNDKKQAERVMSTLRQLAKDGHTVVCSIHQPRSSIFRMFDDLLVLSEGQVMFLGPAKLAT-SYFRSMGYSMPANTNPGEFAIDVVSVDYTSKVS 321
I PS + P D QAE+VM TL+QLA+DGHTV+CSIHQPR S++ FDD+++LSEG V+++GPAK SYF + GY+ P + NP EF D++S+DYTS S
Sbjct: 239 IASPSVIFADEPTTGLDAFQAEKVMETLQQLAQDGHTVICSIHQPRGSVYAKFDDIILLSEGAVVYMGPAKEEPLSYFANFGYNCPDHVNPAEFLADLISIDYTSAES 346
BLAST of mRNA_H-paniculata_contig33108.8889.1 vs. uniprot
Match: A0A833R2I4_9POAL (ABC transporter G family member 7 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R2I4_9POAL) HSP 1 Score: 117 bits (294), Expect = 1.600e-28 Identity = 59/108 (54.63%), Postives = 76/108 (70.37%), Query Frame = 1
Query: 1 IKFPSETALNRPINKNDKKQAERVMSTLRQLAKDGHTVVCSIHQPRSSIFRMFDDLLVLSEGQVMFLGPAKLAT-SYFRSMGYSMPANTNPGEFAIDVVSVDYTSKVS 321
I PS + P D QAE+VM TLRQLA+DGHTV+CSIHQPRSS++ FDD+++LSEG V++ GPAK SYF ++GY P + NP EF D++SVDY+S S
Sbjct: 220 IASPSVIFADEPTTGIDAFQAEKVMETLRQLAEDGHTVICSIHQPRSSVYAKFDDIILLSEGLVVYAGPAKEEPLSYFATLGYECPEHVNPAEFLADLISVDYSSTSS 327
BLAST of mRNA_H-paniculata_contig33108.8889.1 vs. uniprot
Match: A0A8J5V418_ZIZPA (AAA domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5V418_ZIZPA) HSP 1 Score: 116 bits (291), Expect = 4.050e-28 Identity = 58/108 (53.70%), Postives = 76/108 (70.37%), Query Frame = 1
Query: 1 IKFPSETALNRPINKNDKKQAERVMSTLRQLAKDGHTVVCSIHQPRSSIFRMFDDLLVLSEGQVMFLGPAKLAT-SYFRSMGYSMPANTNPGEFAIDVVSVDYTSKVS 321
I PS + P D QAE+VM TLRQLA+DGHTV+CSIHQPR S++ FDD+ +LSEG+V+++GPAK +YF S+GY P + NP EF D++SVDY+S S
Sbjct: 217 IASPSIIFADEPTTGLDAFQAEKVMETLRQLAEDGHTVICSIHQPRGSVYGKFDDIALLSEGEVVYMGPAKEEPLTYFASLGYQCPDHVNPAEFLADLISVDYSSTES 324
BLAST of mRNA_H-paniculata_contig33108.8889.1 vs. uniprot
Match: A0A8J9REU9_9CHLO (Protein white n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9REU9_9CHLO) HSP 1 Score: 116 bits (290), Expect = 5.530e-28 Identity = 56/100 (56.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query: 25 LNRPINKNDKKQAERVMSTLRQLAKDGHTVVCSIHQPRSSIFRMFDDLLVLSEGQVMFLGPAKLATSYFRSMGYSMPANTNPGEFAIDVVSVDYTSKVSK 324
L+ P D QAE+VM TL+ LA DG TVVCSIHQPRSSIF MFDDLL+LSEG +++ GPAK S+F S+G+ +PAN NP EF D++S++ +S ++
Sbjct: 237 LDEPTTGLDSFQAEKVMQTLKDLAMDGKTVVCSIHQPRSSIFSMFDDLLLLSEGSIIYSGPAKGVISHFESLGHPIPANYNPAEFIADLISINSSSSTAE 336 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33108.8889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig33108.8889.1 >prot_H-paniculata_contig33108.8889.1 ID=prot_H-paniculata_contig33108.8889.1|Name=mRNA_H-paniculata_contig33108.8889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp IKFPSETALNRPINKNDKKQAERVMSTLRQLAKDGHTVVCSIHQPRSSIFback to top mRNA from alignment at H-paniculata_contig33108:2066..2392+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig33108.8889.1 ID=mRNA_H-paniculata_contig33108.8889.1|Name=mRNA_H-paniculata_contig33108.8889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at H-paniculata_contig33108:2066..2392+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig33108:2066..2392+ >mRNA_H-paniculata_contig33108.8889.1 ID=mRNA_H-paniculata_contig33108.8889.1|Name=mRNA_H-paniculata_contig33108.8889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig33108:2066..2392+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |