mRNA_H-paniculata_contig331.8881.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig331.8881.1
Unique NamemRNA_H-paniculata_contig331.8881.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig331.8881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig331contigH-paniculata_contig331:21732..22305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size574
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig331.8881.1prot_H-paniculata_contig331.8881.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig331 21993..22301 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930023.55143-UTR-H-paniculata_contig331:21731..219921622930023.55143-UTR-H-paniculata_contig331:21731..21992Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig331 21732..21992 +
1691481114.630157-UTR-H-paniculata_contig331:21731..219921691481114.630157-UTR-H-paniculata_contig331:21731..21992Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig331 21732..21992 +
1622930023.5850303-UTR-H-paniculata_contig331:22301..223051622930023.5850303-UTR-H-paniculata_contig331:22301..22305Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig331 22302..22305 +
1691481114.6504524-UTR-H-paniculata_contig331:22301..223051691481114.6504524-UTR-H-paniculata_contig331:22301..22305Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig331 22302..22305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930023.5662374-CDS-H-paniculata_contig331:21992..223011622930023.5662374-CDS-H-paniculata_contig331:21992..22301Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig331 21993..22301 +
1691481114.6406062-CDS-H-paniculata_contig331:21992..223011691481114.6406062-CDS-H-paniculata_contig331:21992..22301Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig331 21993..22301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig331.8881.1

>prot_H-paniculata_contig331.8881.1 ID=prot_H-paniculata_contig331.8881.1|Name=mRNA_H-paniculata_contig331.8881.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MSVKLCRRQGEGSGASSFVDDVSRQPTLVGESDFSLKKWSNGKTAGTCSF
FLDMLQVIRLSCRNPSFQQLKGRPKSGSFYLQTPRDLPPPPPPETLQQSE
KK*
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mRNA from alignment at H-paniculata_contig331:21732..22305+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig331.8881.1 ID=mRNA_H-paniculata_contig331.8881.1|Name=mRNA_H-paniculata_contig331.8881.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=574bp|location=Sequence derived from alignment at H-paniculata_contig331:21732..22305+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGACATGAATAGAATATTAGAAGCAGAAGAGAACCCACACACTCTTGG
TCGGGCGACTACGCCAACAAGCACCTCTCTCCAAAGGGGGGGCGGAGAGA
ATTCTATGTTTTGCATGCCTTAGTTATTACACAATTGACAAAGCACCCTC
GAGAAGACGAAGTTCTGCTCCCATTAGAGTGATCTCCGATGGTTCATCTC
TCTTTTAACGAGAGGGAAACCACAGTATCCATACGAGGGGAAAATATTCC
CCGTCAAATGCATGTCTGTTAAGCTGTGTCGTCGACAGGGTGAAGGTTCA
GGTGCTTCGTCTTTTGTGGATGACGTCAGCCGTCAACCCACGTTAGTTGG
CGAGTCAGATTTCTCCTTAAAAAAATGGTCCAATGGAAAGACTGCGGGCA
CCTGTTCCTTCTTTCTTGACATGCTGCAAGTCATCCGATTATCGTGTCGT
AACCCTTCCTTCCAACAACTAAAAGGCAGACCCAAATCAGGCAGCTTTTA
CCTACAAACCCCCCGCGACCTCCCTCCGCCCCCTCCCCCCGAAACACTAC
AGCAATCAGAAAAGAAATAGTTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig331:21732..22305+

>mRNA_H-paniculata_contig331.8881.1 ID=mRNA_H-paniculata_contig331.8881.1|Name=mRNA_H-paniculata_contig331.8881.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig331:21732..22305+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGTTAAGCTGTGTCGTCGACAGGGTGAAGGTTCAGGTGCTTCGTC
TTTTGTGGATGACGTCAGCCGTCAACCCACGTTAGTTGGCGAGTCAGATT
TCTCCTTAAAAAAATGGTCCAATGGAAAGACTGCGGGCACCTGTTCCTTC
TTTCTTGACATGCTGCAAGTCATCCGATTATCGTGTCGTAACCCTTCCTT
CCAACAACTAAAAGGCAGACCCAAATCAGGCAGCTTTTACCTACAAACCC
CCCGCGACCTCCCTCCGCCCCCTCCCCCCGAAACACTACAGCAATCAGAA
AAGAAATAGATGTCTGTTAAGCTGTGTCGTCGACAGGGTGAAGGTTCAGG
TGCTTCGTCTTTTGTGGATGACGTCAGCCGTCAACCCACGTTAGTTGGCG
AGTCAGATTTCTCCTTAAAAAAATGGTCCAATGGAAAGACTGCGGGCACC
TGTTCCTTCTTTCTTGACATGCTGCAAGTCATCCGATTATCGTGTCGTAA
CCCTTCCTTCCAACAACTAAAAGGCAGACCCAAATCAGGCAGCTTTTACC
TACAAACCCCCCGCGACCTCCCTCCGCCCCCTCCCCCCGAAACACTACAG
CAATCAGAAAAGAAATAG
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