mRNA_H-paniculata_contig33094.8879.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33094.8879.1
Unique NamemRNA_H-paniculata_contig33094.8879.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig33094.8879.1 vs. uniprot
Match: A0A6H5JRT4_9PHAE (Peptidase A1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRT4_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.210e-20
Identity = 47/101 (46.53%), Postives = 63/101 (62.38%), Query Frame = 1
Query:    1 QDRAFSLCFSLTGGSMVLGGYDDRLHLPGHEVRYTPFVATKNLFSVQASSTVPLGSLQAGKKLLWLINAGLGTIVDSGATDTYLPKAYMEMFSAEWIGVTG 303
            ++R FSLCF   GG+MVLGGYD+RL+ PGHE+ YTP   +   F+V+ +  + +  +   K    +   G G IVDSG TDTYLPK+  + FSA W   TG
Sbjct:  282 KERTFSLCFGKNGGTMVLGGYDNRLNKPGHEMVYTPSTKSSGWFTVKVTD-ITVNQVSIAKDAA-IFQKGKGIIVDSGTTDTYLPKSVAKGFSAAWERATG 380          
BLAST of mRNA_H-paniculata_contig33094.8879.1 vs. uniprot
Match: A0A6H5LNK8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LNK8_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 7.800e-15
Identity = 44/102 (43.14%), Postives = 57/102 (55.88%), Query Frame = 1
Query:    1 QDRAFSLCFSLTGGSMVLGGYDDRLHLPGHEVRYTPFVATKNLFSVQASSTVPLG-SLQAGKKLLWLINAGLGTIVDSGATDTYLPKAYMEMFSAEWIGVTG 303
             +R FSLCFS TGG+MV+GGYD  L+ PG E++YTP     +  +V+ +     G S+     +      G G  V SG TD YLP+A  E FSA W   TG
Sbjct:  264 SERKFSLCFSETGGTMVIGGYDPLLNKPGSEMQYTPSTGETSAPTVKVTDVTLNGVSITTDASVF---QKGTGIKVVSGTTDMYLPRAVAEGFSAAWEAATG 362          
BLAST of mRNA_H-paniculata_contig33094.8879.1 vs. uniprot
Match: A0A6G0WM36_9STRA (Peptidase A1 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WM36_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.410e-13
Identity = 40/98 (40.82%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   13 FSLCFSLTGGSMVLGGYDDRLHLPGHEVRYTPFVATKNLFSVQASSTVPLGSLQAGKKLLWLINAGLGTIVDSGATDTYLPKAYMEMFSAEWIGVTGQ 306
            FSLCF+ TGG+MVLGG+D +LHL      YTP V++   ++V+    + +G+   G    W  N+G G IVDSG+TDTY   +    F + ++ V G+
Sbjct:  208 FSLCFADTGGTMVLGGFDPKLHLA--PPMYTPLVSSTGWYTVEVLDIL-IGNTSLGVSPSWY-NSGRGVIVDSGSTDTYFSSSIRSSFESLFLKVAGR 301          
BLAST of mRNA_H-paniculata_contig33094.8879.1 vs. uniprot
Match: A0A8J2SW55_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SW55_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 5.170e-12
Identity = 37/99 (37.37%), Postives = 49/99 (49.49%), Query Frame = 1
Query:    7 RAFSLCFSLTGGSMVLGGYDDRLHLPGHEVRYTPFVATKNLFSVQASSTVPLGSLQAGKKLLWLINAGLGTIVDSGATDTYLPKAYMEMFSAEWIGVTG 303
             +F++CF   GG+M LGG D R+H     +++ P       F+VQ    +  G      +  W  N G GTIVDSG TDTYLP+   E F   W    G
Sbjct:  254 NSFAMCFMQGGGTMALGGVDTRIHK--EPMQFVPLAKNSGWFTVQLKDVLLNGKSIGVPESTW--NTGKGTIVDSGTTDTYLPRRAAEQFKRAWHAAMG 348          
BLAST of mRNA_H-paniculata_contig33094.8879.1 vs. uniprot
Match: A0A024TLS0_9STRA (Peptidase A1 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TLS0_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.000e-11
Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = 1
Query:   13 FSLCFSLTGGSMVLGGYDDRLHLPGHEVRYTPFVATKNLFSVQASSTVPLGSLQAGKKLLWLINAGLGTIVDSGATDTYLPKAYMEMFSA 282
            FSLCF+ TGG+MVLGG D +LHL      +TP + T   F+V+    + +G++       W  N+G G IVDSG+TD+Y+P +    F+A
Sbjct:  229 FSLCFADTGGTMVLGGVDTKLHLA--PPMFTPLLTTSGWFTVEVLDIL-IGNVSLNVPPSWY-NSGRGVIVDSGSTDSYMPSSVGSAFAA 314          
BLAST of mRNA_H-paniculata_contig33094.8879.1 vs. uniprot
Match: A0A7R9U4S4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4S4_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.600e-10
Identity = 40/102 (39.22%), Postives = 53/102 (51.96%), Query Frame = 1
Query:    1 QDRAFSLCFSLTGGSMVLGGYDDRLHLPGHEVRYTPFVAT-KNLFSVQASSTVPLGSLQAGKKLLWLINAGLGTIVDSGATDTYLPKAYMEMFSAEWIGVTG 303
              R+FSLCF L GG M LGG D +LH+   ++RY   V   +  ++V+           A  K ++   +G G IVDSG TDTYLP+A    F   W   TG
Sbjct:  204 SSRSFSLCFVLGGGVMTLGGVDTQLHI--EDMRYVKNVQKGRGWYTVEVLDIFIGDERVAVAKSVYDNGSGKGMIVDSGTTDTYLPRACATKFKEAWQRATG 303          
BLAST of mRNA_H-paniculata_contig33094.8879.1 vs. uniprot
Match: A0A7S2WCI1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCI1_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.730e-9
Identity = 37/106 (34.91%), Postives = 52/106 (49.06%), Query Frame = 1
Query:    1 QDRAFSLCFSLTGGSMVLGGYDDRLHLPGHEVRYTPFVATKNLFSVQASSTVPLGSLQAGKKLLWL----INAGLGTIVDSGATDTYLPKAYMEMFSAEWIGVTGQ 306
            + + F+LCF   GG M +GG D  +H     +++ P   +   F      TV L  L+ G   L +     N+G G IVDSG TDTYLPK     F   W  ++G+
Sbjct:  242 EAKTFALCFMKGGGMMTIGGADSAIHQ--EPMKFVPLAKSSGWF------TVKLKGLRVGDVSLSVSGNSYNSGKGVIVDSGTTDTYLPKKAAGAFKKAWRSLSGR 339          
BLAST of mRNA_H-paniculata_contig33094.8879.1 vs. uniprot
Match: A0A4D9CR18_9STRA (Peptidase A1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CR18_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.840e-8
Identity = 36/97 (37.11%), Postives = 51/97 (52.58%), Query Frame = 1
Query:   13 FSLCFSLTGGSMVLGGYDDRLHLPGHEVRYTPFVATKNLFSVQASSTVPLGSLQAGKKLLWLINAGLGTIVDSGATDTYLPKAYMEMFSAEWIGVTG 303
            FSLCF+  GGSM +GGY+   H     +++ P       ++V     + +G+   G     + NAG GTIVDSG TDTYLP++    F   +  V G
Sbjct:  268 FSLCFTEDGGSMRIGGYETEHHTK--PLQWVPLTKPTGWYTVTLKD-IKIGNTSIGVDPN-VFNAGQGTIVDSGTTDTYLPRSVASAFQRVFQDVAG 360          
BLAST of mRNA_H-paniculata_contig33094.8879.1 vs. uniprot
Match: A0A7S1YPN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YPN6_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.480e-7
Identity = 44/120 (36.67%), Postives = 58/120 (48.33%), Query Frame = 1
Query:    4 DRAFSLCFS---------LTGGSMVLGGYDDRLH----LPGHEVR----YTPFVATKNLFSVQASSTVPLGSLQAGKKL---LWLINAGLGTIVDSGATDTYLPKAYMEMFSAEWIGVTG 303
            ++ FSLCF             G+M LGG D+RLH    L    V     YT +V    L S    S +P  S Q  + +      +N G   IVDSG TDTYLP++  EMF++ W  +TG
Sbjct:    1 EKKFSLCFGRQPTASREGTEAGAMTLGGTDERLHQTPMLYAANVHSSGFYTVYVKAIYLRSNGGESALPDSSEQIAENIGASASALNYG-NIIVDSGTTDTYLPRSLYEMFASLWKKMTG 119          
BLAST of mRNA_H-paniculata_contig33094.8879.1 vs. uniprot
Match: T0QTB0_SAPDV (Peptidase A1 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QTB0_SAPDV)

HSP 1 Score: 57.0 bits (136), Expect = 2.840e-7
Identity = 40/110 (36.36%), Postives = 54/110 (49.09%), Query Frame = 1
Query:    1 QDRAFSLCFSLTGGSMVLGGYDDRLHLPGHEVRYTPFV--ATKNLFS-----VQASSTVPLGSLQAGKKLLWLINAGLGTIVDSGATDTYLPKAYMEMFSAEWIGVTGQV 309
            Q  AFSLCFS +GG++VLGG D  L  P      T  +  +TK L       V ++ST    S+ +         AGL T+VDSG++ +YLP A    F   +   T  V
Sbjct:  203 QRNAFSLCFSASGGTLVLGGSDPSLFAPQSAATGTVAMLSSTKYLIPLVDVLVGSTSTAATSSINS---------AGLSTLVDSGSSHSYLPNAVRAAFLEAFAAATNTV 303          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33094.8879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JRT4_9PHAE3.210e-2046.53Peptidase A1 domain-containing protein n=2 Tax=Ect... [more]
A0A6H5LNK8_9PHAE7.800e-1543.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6G0WM36_9STRA4.410e-1340.82Peptidase A1 domain-containing protein n=1 Tax=Aph... [more]
A0A8J2SW55_9STRA5.170e-1237.37Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A024TLS0_9STRA1.000e-1142.22Peptidase A1 domain-containing protein n=1 Tax=Aph... [more]
A0A7R9U4S4_9STRA1.600e-1039.22Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S2WCI1_9STRA3.730e-934.91Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9CR18_9STRA1.840e-837.11Peptidase A1 domain-containing protein n=2 Tax=Mon... [more]
A0A7S1YPN6_9STRA1.480e-736.67Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
T0QTB0_SAPDV2.840e-736.36Peptidase A1 domain-containing protein n=1 Tax=Sap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33094contigH-paniculata_contig33094:842..2363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue1.5e-17
Seed eggNOG ortholog2880.D8LJA6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG1339@1,KOG1339@2759
Ec32 ortholog descriptionAspartic peptidase
Ec32 orthologEc-00_006990.1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930023.498503-CDS-H-paniculata_contig33094:841..9921622930023.498503-CDS-H-paniculata_contig33094:841..992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33094 842..992 -
1691481114.611234-CDS-H-paniculata_contig33094:841..9921691481114.611234-CDS-H-paniculata_contig33094:841..992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33094 842..992 -
1622930023.5135143-CDS-H-paniculata_contig33094:2205..23631622930023.5135143-CDS-H-paniculata_contig33094:2205..2363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33094 2206..2363 -
1691481114.6218407-CDS-H-paniculata_contig33094:2205..23631691481114.6218407-CDS-H-paniculata_contig33094:2205..2363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33094 2206..2363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33094.8879.1prot_H-paniculata_contig33094.8879.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33094 842..2363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33094.8879.1

>prot_H-paniculata_contig33094.8879.1 ID=prot_H-paniculata_contig33094.8879.1|Name=mRNA_H-paniculata_contig33094.8879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
QDRAFSLCFSLTGGSMVLGGYDDRLHLPGHEVRYTPFVATKNLFSVQASS
TVPLGSLQAGKKLLWLINAGLGTIVDSGATDTYLPKAYMEMFSAEWIGVT
GQV
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mRNA from alignment at H-paniculata_contig33094:842..2363-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33094.8879.1 ID=mRNA_H-paniculata_contig33094.8879.1|Name=mRNA_H-paniculata_contig33094.8879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1522bp|location=Sequence derived from alignment at H-paniculata_contig33094:842..2363- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACCGAGCATTTTCTCTGTGTTTTTCTTTGACAGGGGGCAGTATGGT GTTGGGAGGGTACGACGATCGGTTGCATTTGCCGGGCCATGAAGTGCGAT ACACGCCTTTCGTGGCGACAAAGAACTTGTTTTCTGTGCAGGCGAGCTCG ACCGTCCCGTCTCGTCTTCCCTGGTTGCTTATATTCGAATTTTGTTGATA AGTGCATACAATCAAAGTTTCAGGTCAGCTGTATAACACCTATCTCAACA TGAGTACGATGGAAGTATTGTGTTAATATTTTACGAGCGTTATAGCTTGG TTCTACTGGCCTTGTACACTCGGGTTGCTTTTTGAAGGAGGCTTCTTGCG GTGGATGGATGGATGGATGGACGGGTGAGGTACTTTATATGTTTGTCATG CGTTCACGTGAGATCCACTTCATGTTTACGTGCAGTACACAGGCAAGGGA TTCTATAGTGATACGTGCTTTCGATGATCGTAGCCCATGTCATGCCTCGT CGAAGAGGTCGGAGAAGCTCTGCTGCTCGGTCATGATGAGGTCAAGATAT ATGTCATGCGAGCAGCAGTATCCTGTTAATCTATACCTAAATATCTGTCA ATTGTTAACTCCATTCCGAGACGCCCCCCCCCCCCCCAAGGTGTTTTGGA ATATACCCCCTAATTTATTGTAAACGCAAAGCATGAAATCCTTCTTCAAT TGAATTTATGTGTGCAGAGAAATGTAGGGTGTAAGCCGTCAATCAAATCC GTCCCAAAATATTCAAGTCTGTGCATGAATTCCTGATCATTTGGACGATT GAAACAGTAAGAGGAAAACACACTCGATGCCCAGATTACACAACATTCAA AAGTTCATTTCATGTCAAGGAAAAATACAGCAACACTTGGTTTTTCACCA ATATCCATACACTCATTATGTGTTATTATCTATTCTTATCTAGCCAAGCA ACACAGGCAATGGATGGCTACGCCTCTGCAGCCTGTGTTTTATCTTTGCT CTCCATGCATGCAATTTTTCATCACACACGCACACACACACACACAGGGG CTCGCCACCATGTATGATGTATATACCGATCCAGCAGAAGTATCTGTACT TCGATTGTACGTTGTTTCAGGTCATTGCATGGATAACATATGCTGATTTT ATCCTGTCGCCCGGCCATTTTTTGTTACTAACACATAGTATGCCATTTTT AAAGTCGGAGCGCGGGTTGTATTCTATTATTAATAGATTTTTGTAGTAAT TACAGAACATTTTTTATAAAACTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTTTTCCCCCGGGCTCTTGTTGTATTGAACAATTCTCCGCGTGTCATAT CATGCAGGTGGAGGCCGTCAGGTTGGGGTCTTTGCAAGCCGGAAAGAAGT TGTTATGGCTCATTAATGCCGGCCTCGGTACGATCGTGGACAGTGGGGCT ACCGATACCTATCTGCCCAAAGCGTACATGGAGATGTTTAGTGCAGAGTG GATAGGCGTTACTGGCCAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig33094:842..2363-

>mRNA_H-paniculata_contig33094.8879.1 ID=mRNA_H-paniculata_contig33094.8879.1|Name=mRNA_H-paniculata_contig33094.8879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig33094:842..2363- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACCGAGCATTTTCTCTGTGTTTTTCTTTGACAGGGGGCAGTATGGT
GTTGGGAGGGTACGACGATCGGTTGCATTTGCCGGGCCATGAAGTGCGAT
ACACGCCTTTCGTGGCGACAAAGAACTTGTTTTCTGTGCAGGCGAGCTCG
ACCGTCCCCAGGACCGAGCATTTTCTCTGTGTTTTTCTTTGACAGGGGGC
AGTATGGTGTTGGGAGGGTACGACGATCGGTTGCATTTGCCGGGCCATGA
AGTGCGATACACGCCTTTCGTGGCGACAAAGAACTTGTTTTCTGTGCAGG
CGAGCTCGACCGTCCCGTTGGGGTCTTTGCAAGCCGGAAAGAAGTTGTTA
TGGCTCATTAATGCCGGCCTCGGTACGATCGTGGACAGTGGGGCTACCGA
TACCTATCTGCCCAAAGCGTACATGGAGATGTTTAGTGCAGAGTGGATAG
GCGTTACTGGCCAGGTGGTTGGGGTCTTTGCAAGCCGGAAAGAAGTTGTT
ATGGCTCATTAATGCCGGCCTCGGTACGATCGTGGACAGTGGGGCTACCG
ATACCTATCTGCCCAAAGCGTACATGGAGATGTTTAGTGCAGAGTGGATA
GGCGTTACTGGCCAGGTG
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