mRNA_H-paniculata_contig3309.8877.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3309.8877.1
Unique NamemRNA_H-paniculata_contig3309.8877.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3309.8877.1 vs. uniprot
Match: D7FVZ6_ECTSI (C2H2 zinc finger protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVZ6_ECTSI)

HSP 1 Score: 377 bits (967), Expect = 4.590e-117
Identity = 288/767 (37.55%), Postives = 341/767 (44.46%), Query Frame = 2
Query:   41 PLQRKCQILILGDGNFSFSLALARALLPQPPARRRSSMKTKDISHNNSDTSTQEHASTVGASDSSPGGPLSTNLPLPEDTTGEDKPNRSLHLSSHKFTIVATSFDGHQDLLHKYPEWVGINPKLRGLGVAVVHNVDATALDFRVL---------SELSVARYDHVVFNHPHTGTEDMRRHRSFLGHFFHALV-TPIADSGRYEGSGVSNSSTDNEKDRGVAGIHTDGSERHGTSAAVALAPGGVVHVTLAKDQPERWGLREQAARHGFVLAHRRLFPADCIEGYMTKRHQTGKSFQRRARDSITFSFVWMGRVKEGEHWPSLCEAKCRRGAMGEVSRELEQGTRAVGTGNDFGVGNSDGGEDEGEEGRGLRTESTDDGGTYD--LPPWLWPKVNIFGTELAGEQTGRAGRVQDPAAGEKLSGGDGGHDKSNGALVSGPVSAVGTRQANGGSIDDVSWSHENSNESTKGRNSRETAGNHDDR----------PEVCRQCGKRYKTAQALRTHTRQLHELHQKEGGFGACPEGSEPLTCLHCERVFTSRVALTQHESAKHNGAFRDIKPDWFEATIYHDCKPPSPSSSPLNKKTEAEATFSSRNASDGAQVEHNELLDRDIVHCEHLQGA--AVNPGQDERFGGVSGTSSSGETCATPTRRTRGSMMLGVTGRLVEAQQVEARQVGEEPGARDEEGNGAGVLKLGSSPSSSSVHCDVCGYWFVDEAQEQRHRDNLRPPVAEEVICHECALCKKRLGSRRALLQHSNFCT 2269
            P ++ C+ILILGDGNFSFSLALA+ALL  P                           T     SSP                         L    F IVATSFDG  DLL KY E  GI   LR +GV V+HNVDATALD RVL         ++    +++HV+FNHPHTGTEDMRRHRSFLGHFFHA+  + I  +G   G G       +    G        ++R G   A+ LAPGG VHVTLA DQPERWGL EQAARHGF L HRR FPA+ I+GYMTKRHQTG+SF++R + S T SF W               A+  RG                                             DDG  +   LPPWLWP+V + G E +  +   A    +P          GG D      V  P  AV                    +++ + R      G   DR          PEVC  CGKRYK+AQALRTHTRQ HEL Q EGG    P+  E     +C RVFTS  AL QH SAKH+G   DIKPDWF  +IYH  +PP     P                            D D+V      G   A N    ++     GT+   E   TP        MLGV  R V A  V            + EGN            S    CDVCGYWF      Q+H DNLRPP+   V  ++C  C K  GSRRALLQH+ FC+
Sbjct:    8 PKRQPCRILILGDGNFSFSLALAKALLLPP---------------------------TPHLLPSSP----------------------QARLQQQTFEIVATSFDGRLDLLSKYAEAPGIVAALRSVGVTVLHNVDATALDSRVLQVSPSDRRRAQQQQQQFEHVIFNHPHTGTEDMRRHRSFLGHFFHAVANSAIGSTGPVGGGGSGACGVSDIGGGGAVAAVPGMADRQGGKGAI-LAPGGAVHVTLALDQPERWGLEEQAARHGFSLVHRRRFPAEKIDGYMTKRHQTGRSFRQRVQASETLSFSW------------AASAQAARG---------------------------------------------DDGAAFGSTLPPWLWPEVVMCGDEASPARAETA--TDEPVRA-------GGSD-----AVDAPTPAV--------------------DDNVRTRGGGRKGGGCTDRTGAAAAEALLPEVCELCGKRYKSAQALRTHTRQFHELGQ-EGGVAVAPKKEERCPHPNCGRVFTSDRALDQHVSAKHSGDNVDIKPDWFVGSIYH-LEPPXXXXVPT---------------------------DGDMVVERGQDGGIPAANAAGSDQI--CRGTAEGAEATTTPKVVETPPEMLGVPAREVPATTV----------CTNIEGN------------SLCQRCDVCGYWFTSPEDLQQHLDNLRPPIEGAVTRYDCGTCVKDFGSRRALLQHAKFCS 580          
BLAST of mRNA_H-paniculata_contig3309.8877.1 vs. uniprot
Match: A0A139AJ33_GONPJ (C2H2-type domain-containing protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AJ33_GONPJ)

HSP 1 Score: 116 bits (291), Expect = 1.580e-23
Identity = 101/293 (34.47%), Postives = 131/293 (44.71%), Query Frame = 2
Query:   41 PLQRKCQILILGDGNFSFSLALARALLPQPPARRRSSMKTKDISHNNSDTSTQEHAST--VGASDSSPGGPLSTNLPLPEDTTGEDKPNRSLHLS--SHKFTIVATSFDGHQDLLHKYPEWVGINPKL---RGLGVAVVHNVDATALDFRVLSELSVARYDHVVFNHPHTGTEDMRRHRSFLGHFFHALVTPIADSGRYEGSGVSNSSTDNEKDRGVAGIHTDGSERHGTSAAVALAPGGVVHVTLAKDQPERWGLREQAARHGFVLAHRRLFPADCIEGYMTKRHQTGKSFQ 898
            P QR  ++L+LGDGNFSFSLA+AR L  +  AR R+  K  D  H   +   Q+   T  V A DS    P +    L +  +G+   +   HL        I  TSFD ++ +  KY +  GI  +L   +GL + V H V+A  L+   L   +    D +V+NHPH GTED R HR  L HFF                                            SA  AL PGG V V+L   Q  RW + EQA R GFVL H   F      GY  KR++TG SF+
Sbjct:   27 PSQRISRVLVLGDGNFSFSLAVARFLWGEDGARGRTERKNGDRRHTTREDQDQDPDGTLRVDAMDS----PYAR--ALMDAGSGKTPAHEYFHLPPRDESLHITTTSFDTYEQVCSKYHDARGIIERLGRYQGL-LHVRHEVNAWELEKLELQ--APLGLDFIVWNHPHLGTEDFRLHRFLLAHFF-------------------------------------------KSAFSALKPGGRVLVSLVHGQDARWEITEQAVRSGFVLEHVEPFKEHLFPGYEPKRNRTGASFK 267          
BLAST of mRNA_H-paniculata_contig3309.8877.1 vs. uniprot
Match: D0NMF8_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NMF8_PHYIT)

HSP 1 Score: 105 bits (262), Expect = 2.630e-20
Identity = 95/316 (30.06%), Postives = 132/316 (41.77%), Query Frame = 2
Query:   44 LQRKCQILILGDGNFSFSLALARALLPQPPARRRSSMKTKDISHNNSDTSTQEHASTVGASDSSPGGPLSTNLPLPEDTTGEDKPNRSLHLSSHKFTIVATSFDGHQDLLHKYPEWVGINPKLRGLGVAVVHNVDATAL-DFRVLSELSVARYDHVVFNHPHTGTEDMRRHRSFLGHFFHALVTPIADSGRYEGSGVSNSSTDNEKDRGVAGIHTDGSERHGTSAAVALAPGGVVHVTLAKDQPERWGLREQAARHGFVLAHRRLFPAD--CIEG--YMTKRHQTGKSF-------QRRARDSITFSFVWMGRVKE 955
            LQR+C +L +GDGNFS+SLALA+                    H N                                  G D P +          + ATS+D + +L+ KYPE   I  +L+ LG +V+H VDAT L +  V +      +D VVFNHPH G E++RRH+S L HF+ + +  + DS   EG+G+                                       +TLA+ QPERW   E+A + G  L HRR+   D   + G  Y  KRHQ GKSF       +R+ + S  F F    +  E
Sbjct:   32 LQRRC-VLTVGDGNFSYSLALAKQ-------------------HKNQ---------------------------------GNDTPVQ----------LTATSYDSYNELVAKYPESKRICGQLKELGASVMHRVDATNLRESLVAAGAEQLTFDAVVFNHPHCGEENVRRHQSLLSHFYTSALEILEDSEEDEGNGIL--------------------------------------LTLAEGQPERWQAVERALQAGLRL-HRRVDDVDNDAVFGLKYERKRHQNGKSFHQVTLHGERKKQASTLFIFRRQNKATE 245          
BLAST of mRNA_H-paniculata_contig3309.8877.1 vs. uniprot
Match: A0A2P4YUA0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YUA0_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.520e-19
Identity = 71/218 (32.57%), Postives = 103/218 (47.25%), Query Frame = 2
Query:  311 HLSSHKFTIVATSFDGHQDLLHKYPEWVGINPKLRGLGVAVVHNVDATALDFRVLSELSVARYDHVVFNHPHTGTEDMRRHRSFLGHFFHALVTPIADSGRYEGSGVSNSSTDNEKDRGVAGIHTDGSERHGTSAAVALAPGGVVHVTLAKDQPERWGLREQAARHGFVLAHRRLFPADCIEG----YMTKRHQTGKSF-------QRRARDSITFSF 931
            H +     + ATS+D + +L+ KYPE   I  +L+ LG +V+H VDAT +    L    + ++D VVFNHPH G E++RRH+S L HF+ + +  + D+   EG+G+                                       +TLA+ QPERW   E+A   G  L HR++   D  E     Y  KRHQ GKSF       +R+ + S  F F
Sbjct:   60 HGNDPSLQLTATSYDSYDELVAKYPECKRICAQLKDLGASVLHRVDATNI-CESLGVEQLKKFDSVVFNHPHCGEENVRRHQSLLSHFYSSALEVLEDNEEDEGNGIL--------------------------------------LTLAEGQPERWQAVERALSAGLRL-HRQVDDVDNDEVFGLVYERKRHQNGKSFHHVTLHGERKKQKSTLFIF 237          
BLAST of mRNA_H-paniculata_contig3309.8877.1 vs. uniprot
Match: A0A225VJE6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VJE6_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.070e-18
Identity = 74/232 (31.90%), Postives = 112/232 (48.28%), Query Frame = 2
Query:  278 TTGEDKPNRSLHLSSHKFT---IVATSFDGHQDLLHKYPEWVGINPKLRGLGVAVVHNVDATALDFRVLSELSVARYDHVVFNHPHTGTEDMRRHRSFLGHFFHALVTPIADSGRYEGSGVSNSSTDNEKDRGVAGIHTDGSERHGTSAAVALAPGGVVHVTLAKDQPERWGLREQAARHGFVLAHRRLFPADCIE----GYMTKRHQTGKSF-------QRRARDSITFSF 931
            T G+   + SL L+    T   + ATS+D + +L+ KYPE   I  +L+ LG +V+H VDAT +   +++E    ++D VVFNHPH G E++RRH+S L HF+ + +  + ++   E +G+                                       +TLA+ QPERW   E+A + G  L HR++   D  E     Y  KRHQ GKSF       +R+ + S  F F
Sbjct:   43 TVGDGNFSYSLALAKQTDTTLQLTATSYDSYDELVAKYPESKRICTQLKELGASVLHRVDATNIRESLVAE---QKFDSVVFNHPHCGEENVRRHQSLLSHFYASALDVLEENEENEWNGIL--------------------------------------LTLAEGQPERWQAVERAQKAGLRL-HRQVDNVDNDEVFGFAYERKRHQNGKSFHQVTLHGERKKQSSTLFIF 232          
BLAST of mRNA_H-paniculata_contig3309.8877.1 vs. uniprot
Match: A0A1S8VN94_9FUNG (C2H2-type domain-containing protein n=2 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VN94_9FUNG)

HSP 1 Score: 101 bits (252), Expect = 1.410e-18
Identity = 93/291 (31.96%), Postives = 124/291 (42.61%), Query Frame = 2
Query:   53 KCQILILGDGNFSFSLALARALL-PQPPARRRSSMKTKDISHNNSDTSTQEHASTVGASDSSPGGPLSTNLPLPEDTTGEDKPNRSLHLSSHKFTIVATSFDGHQDLLHKYPEWVGI-----NPKLRGLGVAVVHNVDATALDFRVLSELSVARYDHVVFNHPHTGTEDMRRHRSFLGHFFHAL---VTPIADSGRYEGSGVSNSSTDNEKDRGVAGIHTDGSERHGTSAAVALAPGGVVHVTLAKDQPERWGLREQAARHGFVLAHRRLFPADCIEGYMTKRHQTGKSFQ 898
            K  ILILGDGNFSFSLAL+R L  PQ P                   S   H                    L   T  +D     L  S     +VATSFD  Q LL KY +   I     +P+ +G  V V+H ++A  L     S   +  +D +++NHPH GTED R HR  + HFFH++   + P +++G       S SS+  +               HG   +     GG V V+L + Q  RW L  QA R   VL     F      GY+ KR++ G SF+
Sbjct:   14 KFNILILGDGNFSFSLALSRYLWHPQHP-------------------SIPPH--------------------LVHQTIAKDYLGLPLSFSESNIHLVATSFDSRQQLLAKYGDSKDILAALDDPRYKGF-VDVMHGINAWDLSAH-FSATVLGGFDLILWNHPHLGTEDFRLHRFLMAHFFHSVSQVLRPTSENGSTLPPSSSLSSSSKKS-------------MHGRDKS-----GGQVRVSLVQGQEVRWDLVRQAQRSHLVLESIAWFDESIWPGYVVKRNKHGGSFK 245          
BLAST of mRNA_H-paniculata_contig3309.8877.1 vs. uniprot
Match: A0A0W8CDT8_PHYNI (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CDT8_PHYNI)

HSP 1 Score: 98.2 bits (243), Expect = 6.030e-18
Identity = 70/211 (33.18%), Postives = 102/211 (48.34%), Query Frame = 2
Query:  335 IVATSFDGHQDLLHKYPEWVGINPKLRGLGVAVVHNVDATAL-DFRVLSELSVARYDHVVFNHPHTGTEDMRRHRSFLGHFFHALVTPIADSGRYEGSGVSNSSTDNEKDRGVAGIHTDGSERHGTSAAVALAPGGVVHVTLAKDQPERWGLREQAARHGFVLAHRRLFPADCIEG----YMTKRHQTGKSF-------QRRARDSITFSF 931
            + A+S+D + +L+ KYPE   I  +L+ LG +V+H VDAT L +  V +     ++D V+FNHPH G E++RRH+S L HF+ + +  I D+   E SG+                                       +TLA+ QPERW   E+A + G  L HR++   D  E     Y  KRHQ GKSF       +R+ + S  F F
Sbjct:   66 LTASSYDSYDELVAKYPECKRICAQLKELGASVLHRVDATNLRESLVAAGAEQLKFDAVIFNHPHCGEENVRRHQSLLSHFYASALDVIEDNEEDEESGIL--------------------------------------LTLAEGQPERWQAVERALKAGLRL-HRQVDEVDNDEVFGLVYDRKRHQNGKSFHQVTLHGERKKQASTLFIF 237          
BLAST of mRNA_H-paniculata_contig3309.8877.1 vs. uniprot
Match: A0A8K1C3C0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3C0_PYTOL)

HSP 1 Score: 96.3 bits (238), Expect = 2.460e-17
Identity = 71/221 (32.13%), Postives = 98/221 (44.34%), Query Frame = 2
Query:  335 IVATSFDGHQDLLHKYPEWVGINPKLRGLGVAVVHNVDATALDFRVLSELSVAR---------YDHVVFNHPHTGTEDMRRHRSFLGHFFHALVTPIADSGRYEGSGVSNSSTDNEKDRGVAGIHTDGSERHGTSAAVALAPG-GVVHVTLAKDQPERWGLREQAARHGFVLAHR----RLFPADCIEGYMTKRHQTGKSFQR-------RARDSITFSFV 934
            +VA+S+D +Q+LL KYPE + I  +L+ LG  ++H +DAT L  R   E   +          +D ++FNHPH G E++RRH+S L HF+                                            SA   L P  G +H+TLA  QPERW  RE+  + G VL          P   ++ Y  KRHQ GKSF R       + +DS  F F 
Sbjct:   56 LVASSYDEYQELLEKYPESIRICTQLQELGADLLHRIDATNL--RATLEACASENGEVQLPTTFDVIIFNHPHCGEENVRRHQSLLSHFY-------------------------------------------ASAKELLHPTRGELHLTLADGQPERWEARERGTKAGLVLVEEIEDVDAHPVYSVD-YERKRHQNGKSFHRVLLHGEKKQQDSTLFIFA 230          
BLAST of mRNA_H-paniculata_contig3309.8877.1 vs. uniprot
Match: W7TQ78_9STRA (C2h2 zinc finger protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQ78_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.830e-17
Identity = 81/234 (34.62%), Postives = 101/234 (43.16%), Query Frame = 2
Query:  335 IVATSFDGHQDLLHKYPEWVGINPKLRGLG--VAVVHNVDATAL----------------DFRVLSELSVAR------------YDHVVFNHPHTGTEDMRRHRSFLGHFFHALVTPIADSGRYEGSGVSNSSTDNEKDRGVAGIHTDGSERHGTSAAVALAPGGVVHVTLAKDQPERWGLREQAARHGFVLAH----RRLFPADCIEGYMTKRHQTGKSFQRRARDSITFSFV 934
            ++ATSFD  Q+L  KY E      +L  LG  V V++ VDA  +                 FR     SV+             +DHV+FNHPHTG ED+ RHR+ L HF  +    +A S                         T G+E            GG VHVTLA DQ +RW L + AAR GF L H     R F  D       KRHQ+GKSF+ R   S T+SF 
Sbjct:   39 LLATSFDNPQELHRKYTESHATVTRLEALGARVRVIYGVDALNILETLRRVQMEEGKRADSFREPPHDSVSNCARTADGHPLEVFDHVIFNHPHTGWEDIHRHRALLAHFLESAKAVLACS------------------------TTQGTE------------GGQVHVTLAGDQCKRWKLLQTAARLGFKLRHICDFYRQFGPD-HPPVDIKRHQSGKSFRIRGLPSFTYSFT 235          
BLAST of mRNA_H-paniculata_contig3309.8877.1 vs. uniprot
Match: A0A6A3UCE6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UCE6_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.880e-17
Identity = 86/309 (27.83%), Postives = 128/309 (41.42%), Query Frame = 2
Query:   41 PLQRKCQILILGDGNFSFSLALARALLPQPPARRRSSMKTKDISHNNSDTSTQEHASTVGASDSSPGGPLSTNLPLPEDTTGEDKPNRSLHLSSHKFTIVATSFDGHQDLLHKYPEWVGINPKLRGLGVAVVHNVDATAL-DFRVLSELSVARYDHVVFNHPHTGTEDMRRHRSFLGHFFHALVTPIADSGRYEGSGVSNSSTDNEKDRGVAGIHTDGSERHGTSAAVALAPGGVVHVTLAKDQPERWGLREQAARHGFVLAHRRLFPADCIE----GYMTKRHQTGKSF-------QRRARDSITFSF 931
            P  R+ ++L +GDGNFS+SLALA+         +R S+                                           G+D P            + ATS+D +++L+ KYPE   I  +L+ LG +V+H VDAT + +  V +  +  ++  VVFNHPH G E++RRH+S L HF+ + +  +      E SGV                                       +TLA+ QPERW   ++A   G  L HR++   D  +     Y  KRHQ GKSF       +R+ + S  F F
Sbjct:   30 PEPRRHRVLTVGDGNFSYSLALAK---------QRKSL-------------------------------------------GDDTP---------PLELTATSYDSYEELVAKYPESKRICAQLKELGASVLHRVDATNIRESLVAAGATPDKFHAVVFNHPHCGEENVRRHQSLLSHFYASALEVLEQEEVSEDSGVL--------------------------------------LTLAEGQPERWQAVQRALSAGLKL-HRQIDDVDGDDTFGVAYERKRHQNGKSFHQVTLHGERKKQSSTLFIF 238          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3309.8877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVZ6_ECTSI4.590e-11737.55C2H2 zinc finger protein n=2 Tax=Ectocarpus TaxID=... [more]
A0A139AJ33_GONPJ1.580e-2334.47C2H2-type domain-containing protein n=1 Tax=Gonapo... [more]
D0NMF8_PHYIT2.630e-2030.06Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
A0A2P4YUA0_9STRA3.520e-1932.57Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A225VJE6_9STRA1.070e-1831.90Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A1S8VN94_9FUNG1.410e-1831.96C2H2-type domain-containing protein n=2 Tax=Batrac... [more]
A0A0W8CDT8_PHYNI6.030e-1833.18Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
A0A8K1C3C0_PYTOL2.460e-1732.13Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W7TQ78_9STRA2.830e-1734.62C2h2 zinc finger protein n=1 Tax=Nannochloropsis g... [more]
A0A6A3UCE6_9STRA3.880e-1727.83Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3309contigH-paniculata_contig3309:355..2873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score368.2
Seed ortholog evalue8.5e-99
Seed eggNOG ortholog2880.D7FVZ6
KEGG koko:K19307
Hectar predicted targeting categoryother localisation
EggNOG free text desc.rRNA (uridine-N3-)-methyltransferase activity
EggNOG OGsKOG4174@1,KOG4174@2759
Ec32 ortholog descriptionC2H2 zinc finger protein
Ec32 orthologEc-01_002750.1
EC2.1.1.313
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons1
Model size2519
Cds size2151
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3309.8877.1prot_H-paniculata_contig3309.8877.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3309 506..2656 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930023.198353-UTR-H-paniculata_contig3309:354..5051622930023.198353-UTR-H-paniculata_contig3309:354..505Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3309 355..505 +
1691481114.4643092-UTR-H-paniculata_contig3309:354..5051691481114.4643092-UTR-H-paniculata_contig3309:354..505Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3309 355..505 +
1622930023.2420456-UTR-H-paniculata_contig3309:2656..28731622930023.2420456-UTR-H-paniculata_contig3309:2656..2873Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3309 2657..2873 +
1691481114.4856348-UTR-H-paniculata_contig3309:2656..28731691481114.4856348-UTR-H-paniculata_contig3309:2656..2873Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3309 2657..2873 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930023.2159243-CDS-H-paniculata_contig3309:505..26561622930023.2159243-CDS-H-paniculata_contig3309:505..2656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3309 506..2656 +
1691481114.4768143-CDS-H-paniculata_contig3309:505..26561691481114.4768143-CDS-H-paniculata_contig3309:505..2656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3309 506..2656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3309.8877.1

>prot_H-paniculata_contig3309.8877.1 ID=prot_H-paniculata_contig3309.8877.1|Name=mRNA_H-paniculata_contig3309.8877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=717bp
MKTKDISHNNSDTSTQEHASTVGASDSSPGGPLSTNLPLPEDTTGEDKPN
RSLHLSSHKFTIVATSFDGHQDLLHKYPEWVGINPKLRGLGVAVVHNVDA
TALDFRVLSELSVARYDHVVFNHPHTGTEDMRRHRSFLGHFFHALVTPIA
DSGRYEGSGVSNSSTDNEKDRGVAGIHTDGSERHGTSAAVALAPGGVVHV
TLAKDQPERWGLREQAARHGFVLAHRRLFPADCIEGYMTKRHQTGKSFQR
RARDSITFSFVWMGRVKEGEHWPSLCEAKCRRGAMGEVSRELEQGTRAVG
TGNDFGVGNSDGGEDEGEEGRGLRTESTDDGGTYDLPPWLWPKVNIFGTE
LAGEQTGRAGRVQDPAAGEKLSGGDGGHDKSNGALVSGPVSAVGTRQANG
GSIDDVSWSHENSNESTKGRNSRETAGNHDDRPEVCRQCGKRYKTAQALR
THTRQLHELHQKEGGFGACPEGSEPLTCLHCERVFTSRVALTQHESAKHN
GAFRDIKPDWFEATIYHDCKPPSPSSSPLNKKTEAEATFSSRNASDGAQV
EHNELLDRDIVHCEHLQGAAVNPGQDERFGGVSGTSSSGETCATPTRRTR
GSMMLGVTGRLVEAQQVEARQVGEEPGARDEEGNGAGVLKLGSSPSSSSV
HCDVCGYWFVDEAQEQRHRDNLRPPVAEEVICHECALCKKRLGSRRALLQ
HSNFCTKRASQPTTAR*
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mRNA from alignment at H-paniculata_contig3309:355..2873+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3309.8877.1 ID=mRNA_H-paniculata_contig3309.8877.1|Name=mRNA_H-paniculata_contig3309.8877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2519bp|location=Sequence derived from alignment at H-paniculata_contig3309:355..2873+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGCATGCTCACAACGTTTCGCAGCAGGGGCAGCACCGACCACTCCAGA GGAAATGTCAAATCCTGATCCTTGGGGATGGCAACTTTTCCTTCTCCCTG GCCCTGGCAAGGGCATTGCTACCACAGCCACCAGCAAGGAGACGCTCTTC AATGAAAACTAAAGACATAAGCCACAACAACAGCGACACCTCGACTCAGG AACACGCTTCTACAGTCGGTGCGTCCGATTCCTCTCCCGGCGGGCCCTTA TCGACCAACCTACCACTACCCGAAGATACCACAGGTGAAGATAAGCCGAA TCGATCACTCCATTTGTCGTCTCACAAGTTCACTATTGTTGCTACGTCGT TCGATGGCCACCAAGATCTGCTTCACAAGTATCCGGAATGGGTGGGCATC AACCCTAAGCTTCGCGGGCTCGGCGTAGCCGTCGTCCACAACGTGGACGC GACTGCACTTGACTTTCGGGTGCTCTCCGAGCTTTCGGTTGCGCGGTACG ATCACGTTGTGTTCAACCATCCGCACACCGGCACGGAGGACATGCGTCGG CACCGATCTTTCTTGGGGCATTTTTTCCACGCCTTGGTTACTCCCATCGC CGATAGCGGTAGATACGAAGGCAGCGGCGTCAGCAACAGCAGCACTGACA ACGAGAAAGATCGCGGCGTTGCGGGTATTCACACGGACGGATCTGAACGA CACGGCACCTCGGCAGCGGTGGCGCTGGCGCCGGGCGGGGTCGTCCATGT TACCCTCGCCAAGGATCAGCCGGAGCGCTGGGGACTGCGCGAACAGGCCG CACGACATGGCTTCGTGCTGGCTCACCGGCGCCTGTTTCCTGCGGATTGC ATAGAAGGGTACATGACTAAGCGCCACCAGACGGGCAAGTCGTTCCAGCG TCGAGCTCGCGACAGCATAACTTTCTCATTTGTGTGGATGGGGAGAGTAA AAGAAGGAGAGCATTGGCCGTCTCTGTGTGAAGCTAAGTGTCGTCGGGGA GCGATGGGAGAGGTGTCGAGAGAATTAGAGCAAGGTACAAGAGCAGTCGG AACGGGTAACGATTTTGGAGTGGGTAACAGTGACGGGGGCGAGGACGAGG GCGAGGAAGGGCGGGGGTTGAGAACAGAGTCTACTGATGACGGCGGCACG TATGATCTGCCTCCATGGCTGTGGCCCAAGGTGAATATCTTCGGCACGGA GCTTGCCGGCGAGCAGACAGGGAGAGCTGGCCGAGTACAGGACCCCGCGG CAGGAGAAAAACTTAGTGGTGGTGACGGTGGGCATGACAAAAGCAACGGC GCATTGGTATCAGGGCCAGTTTCGGCAGTAGGGACAAGGCAAGCGAACGG TGGGTCTATCGACGACGTATCTTGGAGCCATGAAAATTCCAACGAAAGCA CGAAGGGTAGAAATAGTCGCGAGACAGCAGGGAACCACGACGACCGGCCT GAGGTATGCCGACAGTGCGGCAAGCGATACAAGACGGCGCAGGCTCTCCG CACGCACACTCGACAGCTGCACGAGCTCCATCAGAAAGAGGGCGGCTTCG GTGCGTGCCCGGAGGGAAGTGAACCCCTGACATGCCTCCACTGCGAGCGC GTGTTCACGAGCCGGGTCGCTCTGACTCAACACGAGTCTGCCAAGCACAA CGGGGCTTTTCGCGACATTAAGCCGGACTGGTTTGAAGCGACCATATACC ACGACTGCAAACCACCATCGCCATCATCATCACCGTTAAATAAAAAAACG GAGGCAGAAGCAACGTTCTCTTCGCGCAATGCGAGCGACGGCGCGCAGGT GGAGCACAATGAGTTATTGGATAGGGACATCGTGCATTGTGAACATTTAC AAGGAGCAGCAGTGAACCCGGGACAAGATGAACGTTTCGGTGGCGTTTCG GGGACTTCGTCAAGTGGGGAGACATGCGCGACTCCCACTCGACGAACGCG TGGATCTATGATGTTAGGAGTAACTGGTAGACTAGTGGAGGCACAACAAG TAGAGGCACGACAAGTGGGGGAGGAGCCGGGCGCTCGTGATGAAGAGGGG AATGGCGCCGGTGTGTTGAAGCTAGGTTCTTCGCCTTCCTCTAGCAGTGT TCATTGTGATGTGTGCGGGTATTGGTTTGTCGACGAGGCTCAAGAGCAAC GGCATCGGGATAACCTCCGTCCACCCGTCGCCGAGGAGGTCATTTGCCAC GAGTGCGCCTTGTGCAAGAAGCGGTTGGGTTCACGAAGGGCGCTGTTGCA GCATTCAAATTTCTGCACCAAGCGTGCTAGTCAGCCCACAACGGCCAGAT AGTCGTCGCAACTAGCGTGTGTGTTGTAGTGCGGTGGTATTTGTTATTTT ACTTCAAAAATGAACATGATCAACGCGCGGGCTTTTACACTCCTTCGTGG AGTGGTGAATTGAGGATTTGGGATCTCTACGCGGGGATTGTGTGATTTTC ATTTTTTTGTGTCATCCTCTCCGAATCTGGTTCTACACGGCAAATTCATG TTAAGCCAGACTGAAACCT
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Coding sequence (CDS) from alignment at H-paniculata_contig3309:355..2873+

>mRNA_H-paniculata_contig3309.8877.1 ID=mRNA_H-paniculata_contig3309.8877.1|Name=mRNA_H-paniculata_contig3309.8877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4302bp|location=Sequence derived from alignment at H-paniculata_contig3309:355..2873+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAACTAAAGACATAAGCCACAACAACAGCGACACCTCGACTCAGGA
ACACGCTTCTACAGTCGGTGCGTCCGATTCCTCTCCCGGCGGGCCCTTAT
CGACCAACCTACCACTACCCGAAGATACCACAGGTGAAGATAAGCCGAAT
CGATCACTCCATTTGTCGTCTCACAAGTTCACTATTGTTGCTACGTCGTT
CGATGGCCACCAAGATCTGCTTCACAAGTATCCGGAATGGGTGGGCATCA
ACCCTAAGCTTCGCGGGCTCGGCGTAGCCGTCGTCCACAACGTGGACGCG
ACTGCACTTGACTTTCGGGTGCTCTCCGAGCTTTCGGTTGCGCGGTACGA
TCACGTTGTGTTCAACCATCCGCACACCGGCACGGAGGACATGCGTCGGC
ACCGATCTTTCTTGGGGCATTTTTTCCACGCCTTGGTTACTCCCATCGCC
GATAGCGGTAGATACGAAGGCAGCGGCGTCAGCAACAGCAGCACTGACAA
CGAGAAAGATCGCGGCGTTGCGGGTATTCACACGGACGGATCTGAACGAC
ACGGCACCTCGGCAGCGGTGGCGCTGGCGCCGGGCGGGGTCGTCCATGTT
ACCCTCGCCAAGGATCAGCCGGAGCGCTGGGGACTGCGCGAACAGGCCGC
ACGACATGGCTTCGTGCTGGCTCACCGGCGCCTGTTTCCTGCGGATTGCA
TAGAAGGGTACATGACTAAGCGCCACCAGACGGGCAAGTCGTTCCAGCGT
CGAGCTCGCGACAGCATAACTTTCTCATTTGTGTGGATGGGGAGAGTAAA
AGAAGGAGAGCATTGGCCGTCTCTGTGTGAAGCTAAGTGTCGTCGGGGAG
CGATGGGAGAGGTGTCGAGAGAATTAGAGCAAGGTACAAGAGCAGTCGGA
ACGGGTAACGATTTTGGAGTGGGTAACAGTGACGGGGGCGAGGACGAGGG
CGAGGAAGGGCGGGGGTTGAGAACAGAGTCTACTGATGACGGCGGCACGT
ATGATCTGCCTCCATGGCTGTGGCCCAAGGTGAATATCTTCGGCACGGAG
CTTGCCGGCGAGCAGACAGGGAGAGCTGGCCGAGTACAGGACCCCGCGGC
AGGAGAAAAACTTAGTGGTGGTGACGGTGGGCATGACAAAAGCAACGGCG
CATTGGTATCAGGGCCAGTTTCGGCAGTAGGGACAAGGCAAGCGAACGGT
GGGTCTATCGACGACGTATCTTGGAGCCATGAAAATTCCAACGAAAGCAC
GAAGGGTAGAAATAGTCGCGAGACAGCAGGGAACCACGACGACCGGCCTG
AGGTATGCCGACAGTGCGGCAAGCGATACAAGACGGCGCAGGCTCTCCGC
ACGCACACTCGACAGCTGCACGAGCTCCATCAGAAAGAGGGCGGCTTCGG
TGCGTGCCCGGAGGGAAGTGAACCCCTGACATGCCTCCACTGCGAGCGCG
TGTTCACGAGCCGGGTCGCTCTGACTCAACACGAGTCTGCCAAGCACAAC
GGGGCTTTTCGCGACATTAAGCCGGACTGGTTTGAAGCGACCATATACCA
CGACTGCAAACCACCATCGCCATCATCATCACCGTTAAATAAAAAAACGG
AGGCAGAAGCAACGTTCTCTTCGCGCAATGCGAGCGACGGCGCGCAGGTG
GAGCACAATGAGTTATTGGATAGGGACATCGTGCATTGTGAACATTTACA
AGGAGCAGCAGTGAACCCGGGACAAGATGAACGTTTCGGTGGCGTTTCGG
GGACTTCGTCAAGTGGGGAGACATGCGCGACTCCCACTCGACGAACGCGT
GGATCTATGATGTTAGGAGTAACTGGTAGACTAGTGGAGGCACAACAAGT
AGAGGCACGACAAGTGGGGGAGGAGCCGGGCGCTCGTGATGAAGAGGGGA
ATGGCGCCGGTGTGTTGAAGCTAGGTTCTTCGCCTTCCTCTAGCAGTGTT
CATTGTGATGTGTGCGGGTATTGGTTTGTCGACGAGGCTCAAGAGCAACG
GCATCGGGATAACCTCCGTCCACCCGTCGCCGAGGAGGTCATTTGCCACG
AGTGCGCCTTGTGCAAGAAGCGGTTGGGTTCACGAAGGGCGCTGTTGCAG
CATTCAAATTTCTGCACCAAGCGTGCTAGTCAGCCCACAACGGCCAGATA
GATGAAAACTAAAGACATAAGCCACAACAACAGCGACACCTCGACTCAGG
AACACGCTTCTACAGTCGGTGCGTCCGATTCCTCTCCCGGCGGGCCCTTA
TCGACCAACCTACCACTACCCGAAGATACCACAGGTGAAGATAAGCCGAA
TCGATCACTCCATTTGTCGTCTCACAAGTTCACTATTGTTGCTACGTCGT
TCGATGGCCACCAAGATCTGCTTCACAAGTATCCGGAATGGGTGGGCATC
AACCCTAAGCTTCGCGGGCTCGGCGTAGCCGTCGTCCACAACGTGGACGC
GACTGCACTTGACTTTCGGGTGCTCTCCGAGCTTTCGGTTGCGCGGTACG
ATCACGTTGTGTTCAACCATCCGCACACCGGCACGGAGGACATGCGTCGG
CACCGATCTTTCTTGGGGCATTTTTTCCACGCCTTGGTTACTCCCATCGC
CGATAGCGGTAGATACGAAGGCAGCGGCGTCAGCAACAGCAGCACTGACA
ACGAGAAAGATCGCGGCGTTGCGGGTATTCACACGGACGGATCTGAACGA
CACGGCACCTCGGCAGCGGTGGCGCTGGCGCCGGGCGGGGTCGTCCATGT
TACCCTCGCCAAGGATCAGCCGGAGCGCTGGGGACTGCGCGAACAGGCCG
CACGACATGGCTTCGTGCTGGCTCACCGGCGCCTGTTTCCTGCGGATTGC
ATAGAAGGGTACATGACTAAGCGCCACCAGACGGGCAAGTCGTTCCAGCG
TCGAGCTCGCGACAGCATAACTTTCTCATTTGTGTGGATGGGGAGAGTAA
AAGAAGGAGAGCATTGGCCGTCTCTGTGTGAAGCTAAGTGTCGTCGGGGA
GCGATGGGAGAGGTGTCGAGAGAATTAGAGCAAGGTACAAGAGCAGTCGG
AACGGGTAACGATTTTGGAGTGGGTAACAGTGACGGGGGCGAGGACGAGG
GCGAGGAAGGGCGGGGGTTGAGAACAGAGTCTACTGATGACGGCGGCACG
TATGATCTGCCTCCATGGCTGTGGCCCAAGGTGAATATCTTCGGCACGGA
GCTTGCCGGCGAGCAGACAGGGAGAGCTGGCCGAGTACAGGACCCCGCGG
CAGGAGAAAAACTTAGTGGTGGTGACGGTGGGCATGACAAAAGCAACGGC
GCATTGGTATCAGGGCCAGTTTCGGCAGTAGGGACAAGGCAAGCGAACGG
TGGGTCTATCGACGACGTATCTTGGAGCCATGAAAATTCCAACGAAAGCA
CGAAGGGTAGAAATAGTCGCGAGACAGCAGGGAACCACGACGACCGGCCT
GAGGTATGCCGACAGTGCGGCAAGCGATACAAGACGGCGCAGGCTCTCCG
CACGCACACTCGACAGCTGCACGAGCTCCATCAGAAAGAGGGCGGCTTCG
GTGCGTGCCCGGAGGGAAGTGAACCCCTGACATGCCTCCACTGCGAGCGC
GTGTTCACGAGCCGGGTCGCTCTGACTCAACACGAGTCTGCCAAGCACAA
CGGGGCTTTTCGCGACATTAAGCCGGACTGGTTTGAAGCGACCATATACC
ACGACTGCAAACCACCATCGCCATCATCATCACCGTTAAATAAAAAAACG
GAGGCAGAAGCAACGTTCTCTTCGCGCAATGCGAGCGACGGCGCGCAGGT
GGAGCACAATGAGTTATTGGATAGGGACATCGTGCATTGTGAACATTTAC
AAGGAGCAGCAGTGAACCCGGGACAAGATGAACGTTTCGGTGGCGTTTCG
GGGACTTCGTCAAGTGGGGAGACATGCGCGACTCCCACTCGACGAACGCG
TGGATCTATGATGTTAGGAGTAACTGGTAGACTAGTGGAGGCACAACAAG
TAGAGGCACGACAAGTGGGGGAGGAGCCGGGCGCTCGTGATGAAGAGGGG
AATGGCGCCGGTGTGTTGAAGCTAGGTTCTTCGCCTTCCTCTAGCAGTGT
TCATTGTGATGTGTGCGGGTATTGGTTTGTCGACGAGGCTCAAGAGCAAC
GGCATCGGGATAACCTCCGTCCACCCGTCGCCGAGGAGGTCATTTGCCAC
GAGTGCGCCTTGTGCAAGAAGCGGTTGGGTTCACGAAGGGCGCTGTTGCA
GCATTCAAATTTCTGCACCAAGCGTGCTAGTCAGCCCACAACGGCCAGAT
AG
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