mRNA_H-paniculata_contig3308.8876.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3308.8876.1
Unique NamemRNA_H-paniculata_contig3308.8876.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3308.8876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3308contigH-paniculata_contig3308:8475..12535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size572
Cds size570
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930023.138025-CDS-H-paniculata_contig3308:8476..86621622930023.138025-CDS-H-paniculata_contig3308:8476..8662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3308 8477..8662 -
1691481114.442898-CDS-H-paniculata_contig3308:8476..86621691481114.442898-CDS-H-paniculata_contig3308:8476..8662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3308 8477..8662 -
1622930023.1510973-CDS-H-paniculata_contig3308:12151..125351622930023.1510973-CDS-H-paniculata_contig3308:12151..12535Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3308 12152..12535 -
1691481114.4536958-CDS-H-paniculata_contig3308:12151..125351691481114.4536958-CDS-H-paniculata_contig3308:12151..12535Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3308 12152..12535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3308.8876.1prot_H-paniculata_contig3308.8876.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3308 8477..12535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3308.8876.1

>prot_H-paniculata_contig3308.8876.1 ID=prot_H-paniculata_contig3308.8876.1|Name=mRNA_H-paniculata_contig3308.8876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp
SHSRRHYRGEERTNTCVSPDDRLASLGIRHPKTSCLRLYQGDQLAVAAAA
ARSMMACTRSQSRGEGATAEAHQKQRRRCAGTSPANKVATAALVLAACLG
QGSGSAASQGGGGFPGGAGGPPPQRSQQPGGYPSQQQQHHQQQQQQQQQQ
PEQYQQYRAGPGGPGQAAPPQIGGGPPASAQGIGPGGPHA
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mRNA from alignment at H-paniculata_contig3308:8475..12535-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3308.8876.1 ID=mRNA_H-paniculata_contig3308.8876.1|Name=mRNA_H-paniculata_contig3308.8876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4061bp|location=Sequence derived from alignment at H-paniculata_contig3308:8475..12535- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACACTCTCGTCGTCATTATAGAGGTGAAGAACGAACGAATACTTGCGT
TTCGCCGGACGATAGACTCGCCTCGCTTGGCATTCGTCATCCCAAAACCA
GTTGCCTCAGGTTGTACCAAGGAGATCAGTTGGCGGTAGCAGCAGCAGCA
GCCAGAAGCATGATGGCATGCACTCGGAGTCAAAGCCGCGGAGAAGGGGC
AACAGCGGAGGCGCACCAGAAGCAGCGAAGACGTTGTGCTGGCACATCGC
CAGCGAACAAGGTGGCTACGGCCGCTCTAGTGCTAGCAGCGTGCCTCGGA
CAAGGATCAGGATCGGCGGCGTCCCAGGGCGGGGGTGGATTTCCCGGGGG
CGCCGGTGGACCTCCTCCTCAGCGGAGCCAACAGGTCGGTTTGTGCTGTG
TACACAATATGTGCTCTAATCTCTCTGCTCAACCCTGATGCTTGCCTCTC
AGTCTGCCACCTGCGCTTGCGATAATGTGCAGCTGGCATGCCGAACAAAC
AGTATAGTGTTGGTTATGTTGGTGTATGCCTGTGCTTTGTTAACATTAGA
TATGCAATCCTGCTCGTCAGTTGCTGGGTAAGGCTTCTGGGGCGTCTGGA
ATTGTCCGTTTAGTCTTTTCTCAGGAAATGTGATGGGTGCAAATCGGACC
CCATCCTGGTGTCACAAATATCTGTCTGCAACGTACAAGCCGGACATGCA
TGTCATCAGTGAAGTGCAATGGCGCAGGATCGCGCAGTGCCTTGCCATTA
GTATGTGCACATGATTTCGGGGAGTACTCGAAAGAAAGAGGGTGCAGTAA
AACAAGTGGTTTCTACTTCAGGCTGAACCACAGATATTGCCAGCACAGAT
AAGCAAATTATTCATGGGCGGCCCGGCCCGTCTTGCCTGTCTTTTTGTAG
AACCAACTTGATATCGCAGAAAGGGTGAGAGCACAATTAGATCGAAGACC
AGAAGTAACAGACAGTATGTACAAGTACGTACAGTGCAAGTAGTGCGTAT
TATACCATACACGTGCTGTGCATGGTGCACTCACAGTTTTCACCCAATGT
GTTTAGTGTGGGAACGTCTAGTTTTCCCCCTACCCTCCGCACGAGCATGT
GGGAATGGGAGATATTATAGTGATGTGATAAAAGGTATCATGAATGAAGA
AAACGTATCAATATTCGAGAAGCAGCGAAAAGCAGCACGAATGTGCGGTT
ATCAGTTATAGCTTATCGGACAGACACACGCCTCCTAATGCTCGTTTCGC
GTTTCTCGCGTGAAAAAGATGTAACCGCCACCAGGTACACTTCCAAGCGT
ACTATTGCTTATACAGAGTCACATCACTTCTCCCTATATTTTTGGGGGAG
TGAATTTGTTTCCCTAAAATGGGCTTAGACGGCGCGGAACTGGCTGAGTT
TTAGACCAACGAGATCGGAGTTGGTGGGGAATTGATCGCATGTGTCTTCA
AATAGAATTTTTTGTTCATACATTCGTTTTATGCAGGTGGTTTTCGTCAT
TCTCGCTATTTCGTGCCCAGCTGCACCTTTGTGTCCAGAGATGGACAAAA
TTACACTGTACCGAATCACCTCGGGTACTCGGTCGTAAAATAGAAAATAC
CACACATGAAAATCAATCGTACAGTCAGGATACACACCCAGAATTCCCTC
CCTGTCTTTGGTTCTTGAAGTGTTGTCCTCGTTAAGTTCAATAACCATTG
TGTTACCTTGGCAGTCAACTATCTACCTTCACAACCTACACAACACCCTG
TCGCTGAATATTTTTTTCTGACCAACCATTTAGTCACTCAGACCCGGCCG
TCAGAGTCTAGAAGACCCGGCGAACGTTTTTTATTAGGGGACCACAGATC
CCGATGCGCATCGATGACTCATTAACCAATCACGTGCCCCTAAATCTCGA
GTAACACCATGCACAAGACAGCACTGACAAAGTCCATGGATATTGCAGTT
GTACATGTCGCGACCAAGGTGTACAAGCTTGGTCTCTCCAGTGTTGCCTA
CGACGAGCACTGTGCGCGTGTGGGTCGATTCAACGGCTGACAACGTAGAT
ATCTCGCCCAGCACCGCCGGAGAAAGTGTTGAGCTGCAACCGCTGCGTAC
CGATCGATGCGCACCGGTTTGCGTGGAATCCGTTATGGTAAGACTGCAGT
ACGTCGCGACCGCCGTGTGCCAGTCCGGTCTCTGCCAGCAGTACTATCTG
TGAACATGGGCCCAAAAAACTCCTGGCAGAGACAGAGTCGACATCTCGCG
CAGCTTCGAGTGACAACGACGTCGAAAAATTGTGTTCACGTGTGTGTCTG
TATCTGTGTGCACCGGCCGCTGAGAAAGCTGCAGACAACGTAGCTAGCTA
GCCCGTGACGATGGTGAGAAGCTTGCTAGCTGAAGGGCGAAAAGCGAGGC
GGAACCTAGGAGAAGATAGTCCTAGAGCGCGGCAACGTTTCTTGTCGTTC
GGCACCACAAAGAAGTCTAATTACATGGGGGCGCTGCATTCCATTTTCGT
GACATGTCAATATATTCCATTTGTATTATGCGTGTGAAGCTGTCTTCCAA
ATCCTAGTGCTGCATGGTCTAGCAGCACATCGCGTGTGTATGTATGTCTT
TGTTACAGCCTGCTTCTTCGCTTTCTGTGGTGCTTCTCGCAGGCGCCATA
GATAACAGTCAACTGTAGAATTTTCTTTTGTTTCCCTCTCTTAATTTAAG
TCGAACCTATCAGTACTCTTCGAGCAGCAGCTACCCCGCAGGTTGCAAGG
CAGATATACCCTCTATACGTATATATAATACATGCAAACGAGAAAATGTA
AGCTCTCAAGTCTCGGGCAGGTTTCCGATTGATTGGCATACAAATAAAAA
AAGGCGTAAAGGAAACAATGGCGGAAAAAAAGAAAGTTGTACATGGAAAA
AACAGAATGGGTAATAAAAATACGCCAACAAAGAACCCACTCCCACCCCC
CCCCCTATGGATGTATGGTTCCGTTATATCCCACCAATGTTTGGAGCCGT
GCTCTTGATTTTTTTATAGCTTCCATATTTCGATACAAGAATGGCAATAG
GCTCTCTTTTCACATAAGTTACAATTCAACCCCCCTGAAATATCCTTGCC
GTGAGCCTCATGGTGATCAGTTTGCTCTCTGTGCCCCTTTTTTTACCTAA
TTTTGCCGATGAATGTACACACCACCGGACTGCCCCCCCCCTCCGGGAAT
ATTGGTATTAACCTTCCCGTGCCTAGATTGGTGCGCAGATTTTACTGGCA
GCACCTCTGTCCCGGACCACAGTTTGTACTACATAAACCGACATTACTTA
CCCCCTTGCCCGCATGGTAGCGTATCACCATCATTTCTTGTTACAATCCA
GCCACTTCCAGAGTCTTCATTTACAATAACCACGCTCGACGGTTATACCA
TTTAGTGTACCTATTTTTGCTGCCTTGCCCTGTTGGCCTAAAAAAACTGT
CTCGGCGTTCCAATCCTTGCCCGTTCAGGAGGTCATATCGCCCTCCTCCT
GCTCCTGCTCCTGCTTCTCTTCTTCTCGAAGACAAAAACGTCCACTCATC
CATCGACGGACTAAATCGCTCAACTCCTAGCGTTCTACTCGGGGATCCTG
TGTCAACCCTTGACCGTTTCAGCGCGATTTGGTTATGATCTTATGGTCCT
TATCCGTGGTTAAGAGCTTTATACATCTATATAAAGAATTCTGCAGTAAA
GATCTCAAATGAGTAGGGCTGAAAAAGGACCAATGGTGCATACCCATGGT
CGAACGTTGTTTTTTTTTAAGTCGCCCGTTGGGACTTGATCCACTCACAG
AACATCTACTCCCGACTCCCCCCGCCCCCCCGCTTCTCCCAACGTGAATT
CCCTCTTTTGTCTCAATACCCAGCCTGGCGGATACCCTTCACAGCAGCAA
CAACATCATCAACAGCAGCAGCAACAACAACAACAACAGCCAGAGCAGTA
CCAACAGTACCGAGCCGGACCGGGCGGCCCCGGTCAAGCTGCGCCTCCCC
AAATAGGTGGCGGGCCCCCAGCATCGGCTCAAGGAATCGGTCCAGGTGGT
CCGCACGCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3308:8475..12535-

>mRNA_H-paniculata_contig3308.8876.1 ID=mRNA_H-paniculata_contig3308.8876.1|Name=mRNA_H-paniculata_contig3308.8876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at H-paniculata_contig3308:8475..12535- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACACTCTCGTCGTCATTATAGAGGTGAAGAACGAACGAATACTTGCGT
TTCGCCGGACGATAGACTCGCCTCGCTTGGCATTCGTCATCCCAAAACCA
GTTGCCTCAGGTTGTACCAAGGAGATCAGTTGGCGGTAGCAGCAGCAGCA
GCCAGAAGCATGATGGCATGCACTCGGAGTCAAAGCCGCGGAGAAGGGGC
AACAGCGGAGGCGCACCAGAAGCAGCGAAGACGTTGTGCTGGCACATCGC
CAGCGAACAAGGTGGCTACGGCCGCTCTAGTGCTAGCAGCGTGCCTCGGA
CAAGGATCAGGATCGGCGGCGTCCCAGGGCGGGGGTGGATTTCCCGGGGG
CGCCGGTGGACCTCCTCCTCAGCGGAGCCAACAGTCACACTCTCGTCGTC
ATTATAGAGGTGAAGAACGAACGAATACTTGCGTTTCGCCGGACGATAGA
CTCGCCTCGCTTGGCATTCGTCATCCCAAAACCAGTTGCCTCAGGTTGTA
CCAAGGAGATCAGTTGGCGGTAGCAGCAGCAGCAGCCAGAAGCATGATGG
CATGCACTCGGAGTCAAAGCCGCGGAGAAGGGGCAACAGCGGAGGCGCAC
CAGAAGCAGCGAAGACGTTGTGCTGGCACATCGCCAGCGAACAAGGTGGC
TACGGCCGCTCTAGTGCTAGCAGCGTGCCTCGGACAAGGATCAGGATCGG
CGGCGTCCCAGGGCGGGGGTGGATTTCCCGGGGGCGCCGGTGGACCTCCT
CCTCAGCGGAGCCAACAGCCTGGCGGATACCCTTCACAGCAGCAACAACA
TCATCAACAGCAGCAGCAACAACAACAACAACAGCCAGAGCAGTACCAAC
AGTACCGAGCCGGACCGGGCGGCCCCGGTCAAGCTGCGCCTCCCCAAATA
GGTGGCGGGCCCCCAGCATCGGCTCAAGGAATCGGTCCAGGTGGTCCGCA
CGCTCCTGGCGGATACCCTTCACAGCAGCAACAACATCATCAACAGCAGC
AGCAACAACAACAACAACAGCCAGAGCAGTACCAACAGTACCGAGCCGGA
CCGGGCGGCCCCGGTCAAGCTGCGCCTCCCCAAATAGGTGGCGGGCCCCC
AGCATCGGCTCAAGGAATCGGTCCAGGTGGTCCGCACGCT
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