mRNA_H-paniculata_contig33052.8873.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33052.8873.1
Unique NamemRNA_H-paniculata_contig33052.8873.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig33052.8873.1 vs. uniprot
Match: D8LLV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV9_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 1.810e-55
Identity = 92/119 (77.31%), Postives = 105/119 (88.24%), Query Frame = 1
Query:    7 QVMTPSGNSARTTGVDVISPRDFEGRVELRKVHFTYPTRPDVPVFSGLDLTLPAGKVTALVGLSGGGKSTIAALLSRFYTPTRGDILVDGVPVDDLDRKWLTQKIALVGQNPALFTGYV 363
            +VM+P+G+     GVDVISPRDFEG+V+ RKVHFTYPTRPD+ V SGLDLTL AG+VTALVG SGGGKSTIAALLSRFY P+RG+ILVDGV V DLDR+WLTQ+IALVGQNPALFTG +
Sbjct:  190 KVMSPAGSKGLNLGVDVISPRDFEGKVDFRKVHFTYPTRPDMHVLSGLDLTLRAGEVTALVGNSGGGKSTIAALLSRFYPPSRGEILVDGVDVTDLDRRWLTQRIALVGQNPALFTGTI 308          
BLAST of mRNA_H-paniculata_contig33052.8873.1 vs. uniprot
Match: A0A6H5J9P8_9PHAE (ABC transmembrane type-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9P8_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 2.240e-55
Identity = 93/120 (77.50%), Postives = 105/120 (87.50%), Query Frame = 1
Query:    7 QVMTPSGNSARTTGVDVISPRDFEGRVELRKVHFTYPTRPDVPVFSGLDLTLPAGKVTALVGLSGGGKSTIAALLSRFYTPTRGDILVDGVPVDDLDRKWLTQKIALVGQNPALFTGYVV 366
            +VM+P+G+     GVDVISPRDFEG+V+ RKVHFTYPTRPD+ V SGLDLTL AG+VTALVG SGGGKSTIAALLSRFY P+RG ILVDGV V DLDR+WLTQ+IALVGQNPALFTG V+
Sbjct:  328 KVMSPAGSKGLNLGVDVISPRDFEGKVDFRKVHFTYPTRPDMHVLSGLDLTLRAGEVTALVGNSGGGKSTIAALLSRFYPPSRGKILVDGVDVTDLDRRWLTQRIALVGQNPALFTGCVL 447          
BLAST of mRNA_H-paniculata_contig33052.8873.1 vs. uniprot
Match: A0A835ZKR2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKR2_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.700e-36
Identity = 67/103 (65.05%), Postives = 77/103 (74.76%), Query Frame = 1
Query:   55 VISPRDFEGRVELRKVHFTYPTRPDVPVFSGLDLTLPAGKVTALVGLSGGGKSTIAALLSRFYTPTRGDILVDGVPVDDLDRKWLTQKIALVGQNPALFTGYV 363
            +I P  F GRV   KV F YPTR D PV  G+DL LPAGKVTALVG SG GKSTIAALLSRFY P  G I +DG+ + D+DR WL Q++ALVGQNPALF+G +
Sbjct:  310 IIPPEQFRGRVVFSKVSFHYPTRTDAPVLKGVDLELPAGKVTALVGASGAGKSTIAALLSRFYVPIAGTIKIDGIDMRDIDRTWLVQQVALVGQNPALFSGTI 412          
BLAST of mRNA_H-paniculata_contig33052.8873.1 vs. uniprot
Match: A0A6V1UTP1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UTP1_HETAK)

HSP 1 Score: 132 bits (333), Expect = 1.370e-33
Identity = 65/106 (61.32%), Postives = 78/106 (73.58%), Query Frame = 1
Query:   46 GVDVISPRDFEGRVELRKVHFTYPTRPDVPVFSGLDLTLPAGKVTALVGLSGGGKSTIAALLSRFYTPTRGDILVDGVPVDDLDRKWLTQKIALVGQNPALFTGYV 363
            G + I P +  GRVELR V F YPTRPD+PVF GLDL +PAGKVTALVG SG GKSTI ALLS FY P+ G + +DG  +  LD +W  +++ALVGQ+PALF G V
Sbjct:  413 GTETIPPGELRGRVELRGVGFAYPTRPDLPVFEGLDLAVPAGKVTALVGQSGAGKSTITALLSGFYQPSAGAVTLDGRDLRALDPRWRARQVALVGQSPALFAGSV 518          
BLAST of mRNA_H-paniculata_contig33052.8873.1 vs. uniprot
Match: A0A3A8HX39_9DELT (ATP-binding cassette domain-containing protein n=10 Tax=Corallococcus TaxID=83461 RepID=A0A3A8HX39_9DELT)

HSP 1 Score: 125 bits (313), Expect = 5.180e-31
Identity = 59/97 (60.82%), Postives = 71/97 (73.20%), Query Frame = 1
Query:   64 PRDFEGRVELRKVHFTYPTRPDVPVFSGLDLTLPAGKVTALVGLSGGGKSTIAALLSRFYTPTRGDILVDGVPVDDLDRKWLTQKIALVGQNPALFT 354
            P   EG VELR VHF YPTRPDVPV  G+DLTL AG+V A+VG SG GKST+AALLSRFY P +G +L+DG P+  LD  WL + + +V Q P LF+
Sbjct:  341 PATVEGLVELRGVHFAYPTRPDVPVLQGIDLTLKAGEVVAVVGSSGAGKSTLAALLSRFYDPIQGQLLLDGRPLQSLDPSWLRRHVGMVAQEPLLFS 437          
BLAST of mRNA_H-paniculata_contig33052.8873.1 vs. uniprot
Match: H8MMV4_CORCM (Efflux ABC transporter permease/ATP-binding protein n=26 Tax=Corallococcus TaxID=83461 RepID=H8MMV4_CORCM)

HSP 1 Score: 120 bits (302), Expect = 1.740e-29
Identity = 57/97 (58.76%), Postives = 71/97 (73.20%), Query Frame = 1
Query:   64 PRDFEGRVELRKVHFTYPTRPDVPVFSGLDLTLPAGKVTALVGLSGGGKSTIAALLSRFYTPTRGDILVDGVPVDDLDRKWLTQKIALVGQNPALFT 354
            P   EGRVELR VHF YPTRPDV V  G+DLT+ AG+V A+VG SG GKST+AALLSRFY P +G++ +DG P+  LD  WL + + +V Q P LF+
Sbjct:  341 PDTVEGRVELRGVHFAYPTRPDVAVLQGIDLTVNAGEVVAVVGSSGAGKSTLAALLSRFYDPLQGELRLDGRPLKSLDPSWLRRHVGMVAQEPLLFS 437          
BLAST of mRNA_H-paniculata_contig33052.8873.1 vs. uniprot
Match: A0A0L0HFF0_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HFF0_SPIPD)

HSP 1 Score: 120 bits (300), Expect = 4.770e-29
Identity = 60/115 (52.17%), Postives = 76/115 (66.09%), Query Frame = 1
Query:   37 RTTGVDVIS-----PRDFEGRVELRKVHFTYPTRPDVPVFSGLDLTLPAGKVTALVGLSGGGKSTIAALLSRFYTPTRGDILVDGVPVDDLDRKWLTQKIALVGQNPALFTGYVV 366
            RT+ +D  S     P   EG +ELR V F YPTRP+V V  G+D+ L  GK TA+VGLSG GKSTI  LL RFY PT G IL+D VP+  L+ +WL +++ALV Q P LF G ++
Sbjct:  479 RTSPIDPTSDAGFQPEKCEGHLELRGVRFAYPTRPEVQVLKGVDIVLEKGKTTAIVGLSGSGKSTIVGLLERFYDPTSGQILLDNVPISSLNVRWLRRQMALVMQEPVLFNGTIM 593          
BLAST of mRNA_H-paniculata_contig33052.8873.1 vs. uniprot
Match: A0A7I8L6Z5_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8L6Z5_SPIIN)

HSP 1 Score: 119 bits (298), Expect = 8.670e-29
Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 1
Query:   70 DFEGRVELRKVHFTYPTRPDVPVFSGLDLTLPAGKVTALVGLSGGGKSTIAALLSRFYTPTRGDILVDGVPVDDLDRKWLTQKIALVGQNPALFTGYV 363
            D  G VEL+ VHF+YP RP+ P+F+G  L +P+G  TALVG SG GKST+ +L+ RFY P  G +L+DGV + DL  +W+  KI LVGQ PALFT  +
Sbjct:  388 DLRGDVELKDVHFSYPARPEEPIFTGFSLVIPSGTTTALVGQSGSGKSTVVSLIERFYDPQSGAVLIDGVDLRDLQLRWIRGKIGLVGQEPALFTASI 485          
BLAST of mRNA_H-paniculata_contig33052.8873.1 vs. uniprot
Match: A0A7I8L7Q0_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8L7Q0_SPIIN)

HSP 1 Score: 119 bits (298), Expect = 8.830e-29
Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 1
Query:   70 DFEGRVELRKVHFTYPTRPDVPVFSGLDLTLPAGKVTALVGLSGGGKSTIAALLSRFYTPTRGDILVDGVPVDDLDRKWLTQKIALVGQNPALFTGYV 363
            D  G VEL+ VHF+YP RP+ P+F+G  L +P+G  TALVG SG GKST+ +L+ RFY P  G +L+DGV + DL  +W+  KI LVGQ PALFT  +
Sbjct:  391 DLRGDVELKDVHFSYPARPEEPIFTGFSLVIPSGTTTALVGQSGSGKSTVVSLIERFYDPQSGAVLIDGVDLRDLQLRWIRGKIGLVGQEPALFTASI 488          
BLAST of mRNA_H-paniculata_contig33052.8873.1 vs. uniprot
Match: A0A7S0R756_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0R756_9CHLO)

HSP 1 Score: 115 bits (289), Expect = 9.480e-29
Identity = 53/99 (53.54%), Postives = 68/99 (68.69%), Query Frame = 1
Query:   67 RDFEGRVELRKVHFTYPTRPDVPVFSGLDLTLPAGKVTALVGLSGGGKSTIAALLSRFYTPTRGDILVDGVPVDDLDRKWLTQKIALVGQNPALFTGYV 363
            +  +G ++   VHFTYP RP+ P+F GLDLT+ AG   ALVG SG GKST   L+ RFY PT G + +DGV + DL+ KWL Q+I LVGQ P LF+G +
Sbjct:   92 KKVDGLLQFAGVHFTYPNRPEAPIFQGLDLTVEAGHTVALVGASGSGKSTTVQLVERFYDPTSGTVSLDGVDLRDLNLKWLRQQIGLVGQEPVLFSGTI 190          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33052.8873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLV9_ECTSI1.810e-5577.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9P8_9PHAE2.240e-5577.50ABC transmembrane type-1 domain-containing protein... [more]
A0A835ZKR2_9STRA1.700e-3665.05P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6V1UTP1_HETAK1.370e-3361.32Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A3A8HX39_9DELT5.180e-3160.82ATP-binding cassette domain-containing protein n=1... [more]
H8MMV4_CORCM1.740e-2958.76Efflux ABC transporter permease/ATP-binding protei... [more]
A0A0L0HFF0_SPIPD4.770e-2952.17Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A7I8L6Z5_SPIIN8.670e-2954.08Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
A0A7I8L7Q0_SPIIN8.830e-2954.08Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A7S0R756_9CHLO9.480e-2953.54Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33052contigH-paniculata_contig33052:328..1688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.8
Seed ortholog evalue1.9e-46
Seed eggNOG ortholog2880.D8LLV9
KEGG koko:K05655,ko:K05657
KEGG TC3.A.1.201
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0058@2759
Ec32 ortholog descriptionABC transporter type 1, transmembrane domain
Ec32 orthologEc-14_001870.1
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons2
Model size369
Cds size369
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930022.6151862-CDS-H-paniculata_contig33052:327..5131622930022.6151862-CDS-H-paniculata_contig33052:327..513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33052 328..513 +
1691481114.1727424-CDS-H-paniculata_contig33052:327..5131691481114.1727424-CDS-H-paniculata_contig33052:327..513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33052 328..513 +
1622930022.638747-CDS-H-paniculata_contig33052:1505..16881622930022.638747-CDS-H-paniculata_contig33052:1505..1688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33052 1506..1688 +
1691481114.1949148-CDS-H-paniculata_contig33052:1505..16881691481114.1949148-CDS-H-paniculata_contig33052:1505..1688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33052 1506..1688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33052.8873.1prot_H-paniculata_contig33052.8873.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33052 328..1688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33052.8873.1

>prot_H-paniculata_contig33052.8873.1 ID=prot_H-paniculata_contig33052.8873.1|Name=mRNA_H-paniculata_contig33052.8873.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
MNQVMTPSGNSARTTGVDVISPRDFEGRVELRKVHFTYPTRPDVPVFSGL
DLTLPAGKVTALVGLSGGGKSTIAALLSRFYTPTRGDILVDGVPVDDLDR
KWLTQKIALVGQNPALFTGYVV*
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mRNA from alignment at H-paniculata_contig33052:328..1688+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33052.8873.1 ID=mRNA_H-paniculata_contig33052.8873.1|Name=mRNA_H-paniculata_contig33052.8873.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1361bp|location=Sequence derived from alignment at H-paniculata_contig33052:328..1688+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATCAGGTTATGACGCCCAGCGGAAATTCTGCTAGGACGACGGGCGT AGATGTAATCTCACCTCGCGACTTCGAAGGTCGAGTAGAGCTCCGAAAGG TGCACTTCACGTACCCTACTAGGCCAGACGTTCCTGTGTTCTCCGGGCTA GACCTCACGCTACCTGCGGGAAAGGTCACGGCGCTGGTGAGTTTTTTCTC GTTTTTTTTTTTTTTGTTCATGAGTTTTGCATTTTTTTTTTTTTTTGCGT GTTCTTTTTTCTTTTCTTTTTTCCTTTTCTTTTTTTCTTTTCTTTTTTGT CTATTTTTCAGCTTGTGTGTCTTGTAGGGCTGTGTATTGACGTCGATACA TTCACGATGTATCGTATATCGGCTAATACCAGATGAACACCTAGGCTAAC CTGTGCAGTTCGTGCTTGTCCTCGACCTACGGGTTGCCGCGCTCTCTCCC AGTGGGGGGATTGCTTAGCGATCAATACTGCTCGTTGCTGCTGCGCTCGC CGTGGCTCATCGCTACGATCACACAAAAAATGGTTGATGAGCCGTTATTT GAATATAGACTTGAAATACTGTTCTGAAGCGACAACGACCACCATACCGT GCCAACTAACTTGGATATCGATTGGACTAATATATTGATGTATAATGAAC ACAGATTTTATTCATTACCCGATATAATGTAACATGTACCAGTCGTTATC CAATGCTTTTGAAGATTAAAGCCAAGGTGTTTTTTTTTTTGTTTTTGTTT TTTTTGCCTCGAGTGGCTCCTCTAGCGAGGCTCCCTGACCAGCCGGGAGG GTAGGGGGGGCGTTTAACTCGCTCTAAAGTGCTGGACTGGGCTTTGTGCG ACCGGTTGGCTTCTTTCGCACCAACCGATACAGTACAGATATATCGATCG GCATAATATTTTTGTATTGTCCGACTCGCTTCGTATCACGCCCCTAGTTT TTTTCAGTTTGTAAAAAGGATAAGAAAGATGCTGAGCACACGTCCGTTTT GTGTTATGGTTGAATGTATGTTACCATTTTTTCAAACAAATACGGCGCGC AAAACGTGAAAACGCCTCCCCCCCTCCCCCTGCCCACCCCTCCGCTCCCC CCTGTATCTTGCTTCGTCTTGTCTTGTCTGAATAATTGTTTCCTTCCGTG TGGAATAATTGACTATGACGCATGGCAGGTGGGCTTGAGCGGGGGTGGAA AGAGCACGATAGCTGCGCTCCTGAGTCGATTTTACACCCCAACTCGGGGC GATATCTTGGTCGATGGGGTCCCTGTTGATGACCTCGATCGAAAATGGCT CACTCAGAAGATTGCCTTGGTCGGACAGAACCCAGCGCTTTTTACCGGGT ACGTAGTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig33052:328..1688+

>mRNA_H-paniculata_contig33052.8873.1 ID=mRNA_H-paniculata_contig33052.8873.1|Name=mRNA_H-paniculata_contig33052.8873.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig33052:328..1688+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATCAGGTTATGACGCCCAGCGGAAATTCTGCTAGGACGACGGGCGT
AGATGTAATCTCACCTCGCGACTTCGAAGGTCGAGTAGAGCTCCGAAAGG
TGCACTTCACGTACCCTACTAGGCCAGACGTTCCTGTGTTCTCCGGGCTA
GACCTCACGCTACCTGCGGGAAAGGTCACGGCGCTGATGAATCAGGTTAT
GACGCCCAGCGGAAATTCTGCTAGGACGACGGGCGTAGATGTAATCTCAC
CTCGCGACTTCGAAGGTCGAGTAGAGCTCCGAAAGGTGCACTTCACGTAC
CCTACTAGGCCAGACGTTCCTGTGTTCTCCGGGCTAGACCTCACGCTACC
TGCGGGAAAGGTCACGGCGCTGGTGGGCTTGAGCGGGGGTGGAAAGAGCA
CGATAGCTGCGCTCCTGAGTCGATTTTACACCCCAACTCGGGGCGATATC
TTGGTCGATGGGGTCCCTGTTGATGACCTCGATCGAAAATGGCTCACTCA
GAAGATTGCCTTGGTCGGACAGAACCCAGCGCTTTTTACCGGGTACGTAG
TGTAGGTGGGCTTGAGCGGGGGTGGAAAGAGCACGATAGCTGCGCTCCTG
AGTCGATTTTACACCCCAACTCGGGGCGATATCTTGGTCGATGGGGTCCC
TGTTGATGACCTCGATCGAAAATGGCTCACTCAGAAGATTGCCTTGGTCG
GACAGAACCCAGCGCTTTTTACCGGGTACGTAGTGTAG
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