mRNA_H-paniculata_contig33046.8871.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33046.8871.1
Unique NamemRNA_H-paniculata_contig33046.8871.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig33046.8871.1 vs. uniprot
Match: D7G354_ECTSI (COP9 signalosome complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G354_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.230e-17
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 ASTAMQDVTDWALQMRYRTTAARILDAHRKFLDASVRFYELSHAQVR 141
            AS  MQ+VTDWALQMRYRTTAARILDAHRKFLDASVRFYELS AQ +
Sbjct:  171 ASATMQEVTDWALQMRYRTTAARILDAHRKFLDASVRFYELSLAQSK 217
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BLAST of mRNA_H-paniculata_contig33046.8871.1 vs. uniprot
Match: A0A835ZDX9_9STRA (COP9 signalosome complex subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDX9_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 5.370e-10
Identity = 28/45 (62.22%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 ASTAMQDVTDWALQMRYRTTAARILDAHRKFLDASVRFYELSHAQ 135
            AS  M +V +W LQ+RYRT +AR+LDA+RKFLDA++R+YELS A+
Sbjct:  159 ASPRMAEVQNWQLQLRYRTVSARVLDANRKFLDAAMRYYELSQAR 203
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BLAST of mRNA_H-paniculata_contig33046.8871.1 vs. uniprot
Match: A0A7S0SZ10_9STRA (COP9 signalosome complex subunit 4 (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SZ10_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 9.590e-9
Identity = 27/42 (64.29%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 ASTAMQDVTDWALQMRYRTTAARILDAHRKFLDASVRFYELS 126
            AS  M D+TD  LQ+RYR T+AR+LDA+RKFL+AS+R+Y+LS
Sbjct:   61 ASQYMNDITDRHLQLRYRVTSARVLDANRKFLEASLRYYDLS 102
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BLAST of mRNA_H-paniculata_contig33046.8871.1 vs. uniprot
Match: A0A8J2SNR5_9STRA (COP9 signalosome complex subunit 4 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SNR5_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.320e-8
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 ASTAMQDVT---DWALQMRYRTTAARILDAHRKFLDASVRFYELSHA 132
            AS  M+DV+   +WAL +RYR T AR LDA RKFLDAS+R+YELS A
Sbjct:  163 ASGLMRDVSASENWALHLRYRVTLARTLDARRKFLDASMRYYELSRA 209
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BLAST of mRNA_H-paniculata_contig33046.8871.1 vs. uniprot
Match: F0Y2X5_AURAN (COP9 signalosome complex subunit 4 (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2X5_AURAN)

HSP 1 Score: 57.0 bits (136), Expect = 3.150e-8
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   10 AMQDVTDWALQMRYRTTAARILDAHRKFLDASVRFYELSHAQ 135
            A+     WALQ+RYR T AR LDA RKFLDAS+R+YELS A+
Sbjct:  151 AVDGKVHWALQLRYRVTLARTLDARRKFLDASMRYYELSQAR 192
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BLAST of mRNA_H-paniculata_contig33046.8871.1 vs. uniprot
Match: A0A7S1U060_9STRA (COP9 signalosome complex subunit 4 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U060_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.290e-8
Identity = 26/42 (61.90%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 ASTAMQDVTDWALQMRYRTTAARILDAHRKFLDASVRFYELS 126
            AS  M DV+D +L++RYRTT AR+LDA+RKFLDA+ R+Y++S
Sbjct:  123 ASPLMADVSDRSLELRYRTTYARVLDANRKFLDAATRYYDVS 164
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BLAST of mRNA_H-paniculata_contig33046.8871.1 vs. uniprot
Match: W7TQ54_9STRA (Cop9 signalosome complex subunit 4 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQ54_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 9.170e-8
Identity = 26/47 (55.32%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 ASTAMQDVTDWALQMRYRTTAARILDAHRKFLDASVRFYELSHAQVR 141
            AS  M+ VTD+ +Q+RYR T A++LDA+RKFL+A++R++ELS  Q R
Sbjct:  197 ASGLMEAVTDYWVQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRR 243
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BLAST of mRNA_H-paniculata_contig33046.8871.1 vs. uniprot
Match: A0A4D9CTT1_9STRA (COP9 signalosome complex subunit 4 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTT1_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.110e-7
Identity = 26/47 (55.32%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 ASTAMQDVTDWALQMRYRTTAARILDAHRKFLDASVRFYELSHAQVR 141
            AS  M+ VTD+ +Q+RYR T A++LDA+RKFL+A++R++ELS  Q R
Sbjct:  197 ASGLMEAVTDYWVQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRR 243
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BLAST of mRNA_H-paniculata_contig33046.8871.1 vs. uniprot
Match: A0A6V1T605_HETAK (COP9 signalosome complex subunit 4 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1T605_HETAK)

HSP 1 Score: 54.3 bits (129), Expect = 2.840e-7
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 ASTAMQDV-TDWALQMRYRTTAARILDAHRKFLDASVRFYELS 126
            AS  M  V  DW+LQ+RYR T AR+LDA+RKFL+A+VR++ELS
Sbjct:  165 ASGLMHSVENDWSLQLRYRVTYARVLDANRKFLEAAVRYHELS 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33046.8871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G354_ECTSI2.230e-1787.23COP9 signalosome complex subunit 4 n=1 Tax=Ectocar... [more]
A0A835ZDX9_9STRA5.370e-1062.22COP9 signalosome complex subunit 4 n=1 Tax=Tribone... [more]
A0A7S0SZ10_9STRA9.590e-964.29COP9 signalosome complex subunit 4 (Fragment) n=2 ... [more]
A0A8J2SNR5_9STRA2.320e-863.83COP9 signalosome complex subunit 4 n=1 Tax=Pelagom... [more]
F0Y2X5_AURAN3.150e-864.29COP9 signalosome complex subunit 4 (Fragment) n=1 ... [more]
A0A7S1U060_9STRA4.290e-861.90COP9 signalosome complex subunit 4 n=1 Tax=Phaeomo... [more]
W7TQ54_9STRA9.170e-855.32Cop9 signalosome complex subunit 4 (Fragment) n=1 ... [more]
A0A4D9CTT1_9STRA1.110e-755.32COP9 signalosome complex subunit 4 n=1 Tax=Nannoch... [more]
A0A6V1T605_HETAK2.840e-762.79COP9 signalosome complex subunit 4 n=1 Tax=Heteros... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33046contigH-paniculata_contig33046:2270..2410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue1.6e-13
Seed eggNOG ortholog2880.D7G354
Preferred nameCOPS4
KEGG koko:K02930,ko:K12178
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000338,GO:0000715,GO:0001067,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0002009,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007346,GO:0007399,GO:0007423,GO:0008021,GO:0008150,GO:0008152,GO:0008180,GO:0008233,GO:0008234,GO:0009653,GO:0009887,GO:0009888,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010389,GO:0010564,GO:0010605,GO:0010971,GO:0012505,GO:0016043,GO:0016333,GO:0016604,GO:0016607,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0019784,GO:0019827,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0030054,GO:0030133,GO:0030154,GO:0030162,GO:0030182,GO:0030718,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031647,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034641,GO:0036099,GO:0036211,GO:0042176,GO:0042177,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044456,GO:0044464,GO:0044703,GO:0045202,GO:0045787,GO:0045861,GO:0045931,GO:0046483,GO:0046530,GO:0048138,GO:0048140,GO:0048232,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048592,GO:0048609,GO:0048699,GO:0048729,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051276,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0060429,GO:0061136,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0070382,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0090068,GO:0090304,GO:0090596,GO:0097159,GO:0097458,GO:0097708,GO:0098727,GO:0098793,GO:0099503,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901799,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902749,GO:1902751,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:2000058,GO:2000059
EggNOG free text desc.protein deneddylation
EggNOG OGsKOG1497@1,KOG1497@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121
Exons1
Model size141
Cds size129
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930022.398548-CDS-H-paniculata_contig33046:2269..23981622930022.398548-CDS-H-paniculata_contig33046:2269..2398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33046 2270..2398 -
1691481114.039383-CDS-H-paniculata_contig33046:2269..23981691481114.039383-CDS-H-paniculata_contig33046:2269..2398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33046 2270..2398 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930022.4120057-UTR-H-paniculata_contig33046:2398..24101622930022.4120057-UTR-H-paniculata_contig33046:2398..2410Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33046 2399..2410 -
1691481114.0492067-UTR-H-paniculata_contig33046:2398..24101691481114.0492067-UTR-H-paniculata_contig33046:2398..2410Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33046 2399..2410 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33046.8871.1prot_H-paniculata_contig33046.8871.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33046 2270..2398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33046.8871.1

>prot_H-paniculata_contig33046.8871.1 ID=prot_H-paniculata_contig33046.8871.1|Name=mRNA_H-paniculata_contig33046.8871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=43bp
MQDVTDWALQMRYRTTAARILDAHRKFLDASVRFYELSHAQVR
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mRNA from alignment at H-paniculata_contig33046:2270..2410-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33046.8871.1 ID=mRNA_H-paniculata_contig33046.8871.1|Name=mRNA_H-paniculata_contig33046.8871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at H-paniculata_contig33046:2270..2410- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCATCGACGGCCATGCAAGATGTGACGGACTGGGCCTTGCAGATGCGCTA
CCGCACCACGGCGGCGAGAATTCTCGATGCGCACAGAAAGTTCCTGGATG
CTTCTGTGCGGTTTTATGAGCTCAGCCATGCGCAGGTACGC
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Coding sequence (CDS) from alignment at H-paniculata_contig33046:2270..2410-

>mRNA_H-paniculata_contig33046.8871.1 ID=mRNA_H-paniculata_contig33046.8871.1|Name=mRNA_H-paniculata_contig33046.8871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at H-paniculata_contig33046:2270..2410- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGATGTGACGGACTGGGCCTTGCAGATGCGCTACCGCACCACGGC
GGCGAGAATTCTCGATGCGCACAGAAAGTTCCTGGATGCTTCTGTGCGGT
TTTATGAGCTCAGCCATGCGCAGGTACGCATGCAAGATGTGACGGACTGG
GCCTTGCAGATGCGCTACCGCACCACGGCGGCGAGAATTCTCGATGCGCA
CAGAAAGTTCCTGGATGCTTCTGTGCGGTTTTATGAGCTCAGCCATGCGC
AGGTACGC
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