mRNA_H-paniculata_contig33039.8867.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33039.8867.1
Unique NamemRNA_H-paniculata_contig33039.8867.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33039.8867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33039contigH-paniculata_contig33039:412..1240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size218
Cds size153
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33039.8867.1prot_H-paniculata_contig33039.8867.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33039 469..1232 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930021.9453242-UTR-H-paniculata_contig33039:411..4681622930021.9453242-UTR-H-paniculata_contig33039:411..468Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33039 412..468 +
1691481113.8294964-UTR-H-paniculata_contig33039:411..4681691481113.8294964-UTR-H-paniculata_contig33039:411..468Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33039 412..468 +
1622930022.0032768-UTR-H-paniculata_contig33039:1232..12401622930022.0032768-UTR-H-paniculata_contig33039:1232..1240Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33039 1233..1240 +
1691481113.8577213-UTR-H-paniculata_contig33039:1232..12401691481113.8577213-UTR-H-paniculata_contig33039:1232..1240Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33039 1233..1240 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930021.9682908-CDS-H-paniculata_contig33039:468..5581622930021.9682908-CDS-H-paniculata_contig33039:468..558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33039 469..558 +
1691481113.8391683-CDS-H-paniculata_contig33039:468..5581691481113.8391683-CDS-H-paniculata_contig33039:468..558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33039 469..558 +
1622930021.9873922-CDS-H-paniculata_contig33039:1169..12321622930021.9873922-CDS-H-paniculata_contig33039:1169..1232Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33039 1170..1232 +
1691481113.848323-CDS-H-paniculata_contig33039:1169..12321691481113.848323-CDS-H-paniculata_contig33039:1169..1232Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33039 1170..1232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33039.8867.1

>prot_H-paniculata_contig33039.8867.1 ID=prot_H-paniculata_contig33039.8867.1|Name=mRNA_H-paniculata_contig33039.8867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
MPDSVHLAFLDELEEHAPGVGVETGRNEQQSPGLGNRGLTAKPGWGMSKG
*
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mRNA from alignment at H-paniculata_contig33039:412..1240+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33039.8867.1 ID=mRNA_H-paniculata_contig33039.8867.1|Name=mRNA_H-paniculata_contig33039.8867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=829bp|location=Sequence derived from alignment at H-paniculata_contig33039:412..1240+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAGCACCAAGTCAGGATGGGGTAAGTTCAGCCTATATGATTCTTCTGC
TGCCGCGATGCCAGACAGTGTACATCTCGCGTTTCTGGACGAGTTAGAGG
AACACGCCCCGGGGGTAGGCGTGGAGACCGGAAGAAACGAGCAGCAGGTG
AAGAGCGTCGGTCGGTAGGTCGGTCGGTCGATCGGTGGGTAATGAAAGAA
GAGAGGAAGGAAGGCATAGGGCTCTGAGAAACTAATCTCGCCTCTGATAC
CATTCTCGTGCACAGGTTTATGCACCCAGTACGTACAGCAGCAGGATGTT
ACTCTACAACCACAATTGAGCATCCTGGCGGTTCGTTCTGTAAATTTACT
GACTGCTAATTTTACTGATATGCGGCATGAGTTCGGCCGGGCGAGATGTT
TTTGGCTCTCAGCTAGCTGGACTATCTGTCGTCGATTGGTCCATACATAT
TCGAGATGTAGGCATGGTGTCGCTGCCTCAGCTTGGATACATGTAGGCGA
GTGGTGTAGGGCGGCGCACCTCTGCTGCTGTTGTTGATGTGTGGCCATGT
TGGTGTGATAGTCGTGGGCTATCGCCGTGTTGCTGTCGTTGATTGTTTAC
CGCTGTGCGTTGTACACTAACAGTAACACGACCTAGCTTACTTTGTGATG
GTACGAGTGTGCCCCCATTGGGTGGTATCGGCAATCAATCTGCTCATAAA
CCCTACCCTCCTACCGTTTCCCCCGCTGTATCCAACGTGCATCGCTTTGC
ACCATTAGTCACCTGGCCTTGGTAACAGGGGGTTGACAGCAAAGCCTGGT
TGGGGAATGTCGAAGGGGTAGTTCACACC
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Coding sequence (CDS) from alignment at H-paniculata_contig33039:412..1240+

>mRNA_H-paniculata_contig33039.8867.1 ID=mRNA_H-paniculata_contig33039.8867.1|Name=mRNA_H-paniculata_contig33039.8867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig33039:412..1240+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAGACAGTGTACATCTCGCGTTTCTGGACGAGTTAGAGGAACACGC
CCCGGGGGTAGGCGTGGAGACCGGAAGAAACGAGCAGCAGATGCCAGACA
GTGTACATCTCGCGTTTCTGGACGAGTTAGAGGAACACGCCCCGGGGGTA
GGCGTGGAGACCGGAAGAAACGAGCAGCAGTCACCTGGCCTTGGTAACAG
GGGGTTGACAGCAAAGCCTGGTTGGGGAATGTCGAAGGGGTAGTCACCTG
GCCTTGGTAACAGGGGGTTGACAGCAAAGCCTGGTTGGGGAATGTCGAAG
GGGTAG
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