mRNA_H-paniculata_contig33034.8865.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33034.8865.1
Unique NamemRNA_H-paniculata_contig33034.8865.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig33034.8865.1 vs. uniprot
Match: A0A6H5JL55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL55_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 3.420e-37
Identity = 65/102 (63.73%), Postives = 85/102 (83.33%), Query Frame = 1
Query:    1 DQEVKDLIQYMKDMTGLSSDDPPDTKWVKMEKTNKRTGRK-EPMGQCLIGIQLYPAKRAQMQAGGTGRLEPNNSPFLPPPSGRLSFTWNPFSMLYQLLGPRL 303
            D+EVK+LIQ +K M G+S+DDPPD++W+ +EKT+++TG+K  PMG+CLIGIQ+YP  +A+ Q  G GR EPN+SPFLPPP+GRL F WNP SM+ QLLGPRL
Sbjct: 2039 DEEVKELIQKLKVMAGISNDDPPDSQWISLEKTDRKTGKKVTPMGKCLIGIQIYPLDKAEAQPAGLGRAEPNDSPFLPPPNGRLQFGWNPISMISQLLGPRL 2140          
BLAST of mRNA_H-paniculata_contig33034.8865.1 vs. uniprot
Match: D8LF87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF87_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 6.140e-32
Identity = 60/126 (47.62%), Postives = 91/126 (72.22%), Query Frame = 1
Query:    7 EVKDLIQYMKDMTGLSSDDPPDTKWVKMEKTNKRTGRKEPMGQCLIGIQLYPAKRAQMQAGGTGRLEPNNSPFLPPPSGRLSFTWNPFSMLYQLLGPRLCTILACLVCVVLVIAMLILFQPVWNLL 384
            + K  +  +K+MTGL  DDP ++ W+ ME+TN  TG+KE MG+CL+G+Q++P ++A++Q  G GR +PN+ PFLPPP+GRL F+ NPF M  +L GP++C  +AC+ C V+ I +L+ F   +NLL
Sbjct: 2095 DAKAFVNTIKNMTGLWDDDPDESYWLNMERTNYETGQKEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFNLL 2220          
BLAST of mRNA_H-paniculata_contig33034.8865.1 vs. uniprot
Match: A0A067CD61_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CD61_SAPPC)

HSP 1 Score: 120 bits (302), Expect = 4.100e-29
Identity = 58/125 (46.40%), Postives = 87/125 (69.60%), Query Frame = 1
Query:   16 DLIQYMKDMTGLSSDDPPDTKWVKMEKTNKRTGRKEPMGQCLIGIQLYPAKRAQMQAGGTGRLEPNNSPFLPPPSGRLSFTWNPFSMLYQLLGPRLCTILACLVCVVLVIAMLILFQPVWNLLIV 390
            D I+ +K+ TGL   DP D+ W+KME+ N+ TG+KE MG   I ++L P  +A++Q  G GR +PNNSPFLPPP+GRL F+ NPF +  +LLGP++C  + C +C +L++ ++    P+ NL+IV
Sbjct: 1633 DAIRSIKEATGLWDTDPTDSTWIKMERLNRETGQKEAMGALCISMELVPIDKAKVQTVGFGRSDPNNSPFLPPPAGRLKFSMNPFYVFNELLGPKICHRVMCCLCCILIMVLMYFLGPIINLIIV 1757          
BLAST of mRNA_H-paniculata_contig33034.8865.1 vs. uniprot
Match: A0A418BA36_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418BA36_9STRA)

HSP 1 Score: 120 bits (300), Expect = 7.430e-29
Identity = 60/129 (46.51%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    4 QEVKDLIQYMKDMTGLSSDDPPDTKWVKMEKTNKRTGRKEPMGQCLIGIQLYPAKRAQMQAGGTGRLEPNNSPFLPPPSGRLSFTWNPFSMLYQLLGPRLCTILACLVCVVLVIAMLILFQPVWNLLIV 390
            Q   D I+ +K+ TGL   DP D+ W+KME+ N+ T  KEPMG   I ++L P  +A++Q  G GR +PNN PFLPPP+GRL F+ NPF +  +LLGP++C    C +C+V+V+A +    P  NL+IV
Sbjct:  973 QRDNDAIRSIKEATGLWDTDPTDSTWIKMERLNRETNVKEPMGAVCISMELVPIDKAKIQTVGFGRSDPNNGPFLPPPAGRLKFSMNPFYVFNELLGPKICRKFMCCLCIVIVMAAMYFLGPFMNLIIV 1101          
BLAST of mRNA_H-paniculata_contig33034.8865.1 vs. uniprot
Match: A0A024UTA9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UTA9_9STRA)

HSP 1 Score: 120 bits (300), Expect = 7.630e-29
Identity = 60/129 (46.51%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    4 QEVKDLIQYMKDMTGLSSDDPPDTKWVKMEKTNKRTGRKEPMGQCLIGIQLYPAKRAQMQAGGTGRLEPNNSPFLPPPSGRLSFTWNPFSMLYQLLGPRLCTILACLVCVVLVIAMLILFQPVWNLLIV 390
            Q   D I+ +K+ TGL   DP D+ W+KME+ N+ T  KEPMG   I ++L P  +A++Q  G GR +PNN PFLPPP+GRL F+ NPF +  +LLGP++C    C +C+V+V+A +    P  NL+IV
Sbjct: 1647 QRDNDAIRSIKEATGLWDTDPTDSTWIKMERLNRETNVKEPMGAVCISMELVPIDKAKIQTVGFGRSDPNNGPFLPPPAGRLKFSMNPFYVFNELLGPKICRKFMCCLCIVIVMAAMYFLGPFMNLIIV 1775          
BLAST of mRNA_H-paniculata_contig33034.8865.1 vs. uniprot
Match: A0A1V9ZTL2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZTL2_9STRA)

HSP 1 Score: 120 bits (300), Expect = 7.800e-29
Identity = 57/125 (45.60%), Postives = 88/125 (70.40%), Query Frame = 1
Query:   16 DLIQYMKDMTGLSSDDPPDTKWVKMEKTNKRTGRKEPMGQCLIGIQLYPAKRAQMQAGGTGRLEPNNSPFLPPPSGRLSFTWNPFSMLYQLLGPRLCTILACLVCVVLVIAMLILFQPVWNLLIV 390
            D I+ +K+ TGL  +DP D+ W+KME+ N+ TG+KE MG   I ++L P ++A++   G GR +PNNSPFLPPP+GRL F+ NPF +  +LLGP++C  + C +C +L++ ++    P+ NL+IV
Sbjct: 3427 DAIRSIKEATGLWDNDPTDSTWIKMERLNRETGQKEAMGAVCISMELVPVEKAKVMTVGFGRSDPNNSPFLPPPAGRLKFSMNPFYVFNELLGPKICHRVMCCLCXLLIMVLMYFLGPIINLIIV 3551          
BLAST of mRNA_H-paniculata_contig33034.8865.1 vs. uniprot
Match: A0A067CD42_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CD42_SAPPC)

HSP 1 Score: 119 bits (299), Expect = 9.880e-29
Identity = 61/126 (48.41%), Postives = 87/126 (69.05%), Query Frame = 1
Query:   16 DLIQYMKDMTGLSSDDPPDTKWVKMEKTNKRTGRKEPMGQCLIGIQLYPAKRAQMQAGGTGRLEPNNSPFLPPPSGRLSFTWNPFSMLYQLLGPRLCTILACLVCVVLVIAMLILFQPVWNLLIVI 393
            D I+ +K+ TGL   DP D+ W+KME+ N+ TG K+PMG   I ++L P ++A+  A G GR +PNNSPFLPPP+GRL F+ NPF +  +LLGP++C  + C+VC V +  ++    P+ NLLIVI
Sbjct:  714 DAIRSIKEATGLFDTDPTDSSWIKMERMNRETGVKDPMGAVCISMELVPIEKAKTIAVGYGRSDPNNSPFLPPPAGRLKFSMNPFYVFNELLGPKICRRVMCVVCFVAIGVIMYFAGPIINLLIVI 839          
BLAST of mRNA_H-paniculata_contig33034.8865.1 vs. uniprot
Match: A0A6A5AKT2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AKT2_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.620e-28
Identity = 59/123 (47.97%), Postives = 85/123 (69.11%), Query Frame = 1
Query:   22 IQYMKDMTGLSSDDPPDTKWVKMEKTNKRTGRKEPMGQCLIGIQLYPAKRAQMQAGGTGRLEPNNSPFLPPPSGRLSFTWNPFSMLYQLLGPRLCTILACLVCVVLVIAMLILFQPVWNLLIV 390
            I+ +K+ TGL   DP D+ W+KME+ N+ T  KEPMG   I ++L P ++A++QA G GR +PNN+PFLPPP+GRL F+ NPF +  +LLGP +C  + C +C+V ++A +    P  NLLIV
Sbjct:  436 IRSIKESTGLWDTDPTDSTWIKMERLNRETNVKEPMGAVCISMELVPVEKAKIQAVGFGRSDPNNTPFLPPPAGRLKFSMNPFYVFNELLGPAICRKVMCCLCLVAIMAAMYFLGPFMNLLIV 558          
BLAST of mRNA_H-paniculata_contig33034.8865.1 vs. uniprot
Match: A0A1V9ZRT1_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZRT1_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.940e-28
Identity = 61/126 (48.41%), Postives = 87/126 (69.05%), Query Frame = 1
Query:   16 DLIQYMKDMTGLSSDDPPDTKWVKMEKTNKRTGRKEPMGQCLIGIQLYPAKRAQMQAGGTGRLEPNNSPFLPPPSGRLSFTWNPFSMLYQLLGPRLCTILACLVCVVLVIAMLILFQPVWNLLIVI 393
            D I+ +K+ TGL   DP D+ W+KME+ N+ TG KEPMG   I ++L P ++A++   G GR +PNNSPFLPPP+GRL F+ NPF +  +LLGPR+C  + C++C V +  ++    P+ NLLIVI
Sbjct: 1665 DAIRSIKEATGLWDTDPTDSTWIKMERFNRDTGVKEPMGAVCISMELVPVEKARVMTVGFGRSDPNNSPFLPPPAGRLKFSMNPFYVFNELLGPRICRRVMCVLCFVALGVIMYFAGPIINLLIVI 1790          
BLAST of mRNA_H-paniculata_contig33034.8865.1 vs. uniprot
Match: W4GKQ4_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GKQ4_9STRA)

HSP 1 Score: 118 bits (296), Expect = 2.640e-28
Identity = 59/123 (47.97%), Postives = 85/123 (69.11%), Query Frame = 1
Query:   22 IQYMKDMTGLSSDDPPDTKWVKMEKTNKRTGRKEPMGQCLIGIQLYPAKRAQMQAGGTGRLEPNNSPFLPPPSGRLSFTWNPFSMLYQLLGPRLCTILACLVCVVLVIAMLILFQPVWNLLIV 390
            I+ +K+ TGL   DP D+ W+KME+ N+ T  KEPMG   I ++L P ++A++QA G GR +PNN+PFLPPP+GRL F+ NPF +  +LLGP +C  + C +C+V ++A +    P  NLLIV
Sbjct: 1670 IRSIKESTGLWDTDPTDSTWIKMERLNRETNVKEPMGAVCISMELVPVEKAKIQAVGFGRSDPNNTPFLPPPAGRLKFSMNPFYVFNELLGPAICRKVMCCLCLVAIMAAMYFLGPFMNLLIV 1792          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33034.8865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JL55_9PHAE3.420e-3763.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF87_ECTSI6.140e-3247.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A067CD61_SAPPC4.100e-2946.40Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A418BA36_9STRA7.430e-2946.51Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024UTA9_9STRA7.630e-2946.51Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1V9ZTL2_9STRA7.800e-2945.60Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067CD42_SAPPC9.880e-2948.41Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A6A5AKT2_9STRA1.620e-2847.97Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A1V9ZRT1_9STRA1.940e-2848.41Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
W4GKQ4_9STRA2.640e-2847.97Uncharacterized protein n=9 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33034contigH-paniculata_contig33034:806..2028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue4.4e-27
Seed eggNOG ortholog2880.D8LF87
KEGG koko:K19949,ko:K22125,ko:K22127
Hectar predicted targeting categoryother localisation
EggNOG free text desc.plasma membrane repair
EggNOG OGsKOG1030@1,KOG1030@2759,KOG1326@1,KOG1326@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size405
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33034.8865.1prot_H-paniculata_contig33034.8865.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33034 836..2028 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930021.776874-UTR-H-paniculata_contig33034:805..8351622930021.776874-UTR-H-paniculata_contig33034:805..835Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33034 806..835 +
1691481113.7879977-UTR-H-paniculata_contig33034:805..8351691481113.7879977-UTR-H-paniculata_contig33034:805..835Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33034 806..835 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930021.7969208-CDS-H-paniculata_contig33034:835..9251622930021.7969208-CDS-H-paniculata_contig33034:835..925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33034 836..925 +
1691481113.802133-CDS-H-paniculata_contig33034:835..9251691481113.802133-CDS-H-paniculata_contig33034:835..925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33034 836..925 +
1622930021.8212743-CDS-H-paniculata_contig33034:1743..20281622930021.8212743-CDS-H-paniculata_contig33034:1743..2028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33034 1744..2028 +
1691481113.8099704-CDS-H-paniculata_contig33034:1743..20281691481113.8099704-CDS-H-paniculata_contig33034:1743..2028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33034 1744..2028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33034.8865.1

>prot_H-paniculata_contig33034.8865.1 ID=prot_H-paniculata_contig33034.8865.1|Name=mRNA_H-paniculata_contig33034.8865.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MKDMTGLSSDDPPDTKWVKMEKTNKRTGRKEPMGQCLIGIQLYPAKRAQM
QAGGTGRLEPNNSPFLPPPSGRLSFTWNPFSMLYQLLGPRLCTILACLVC
VVLVIAMLILFQPVWNLLIVIFVK*
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mRNA from alignment at H-paniculata_contig33034:806..2028+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33034.8865.1 ID=mRNA_H-paniculata_contig33034.8865.1|Name=mRNA_H-paniculata_contig33034.8865.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1223bp|location=Sequence derived from alignment at H-paniculata_contig33034:806..2028+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCAGGAGGTCAAGGACTTGATCCAGTACATGAAGGACATGACAGGTCT TAGCAGCGACGATCCCCCGGATACTAAGTGGGTCAAGATGGAGAAGACCA ACAAGAGAACGGGCAGAAAGGTGAACACAAGATGGTATGAACACCGCAAA AAGTATCGTATCTCCTGAAATATTAGTGCGAAATTTGTGTCACTTTCAAC GGTTGCCGCCGGGCAGACAGTAGTAGTACACTGATGACATCCACAAGAAG GGCAATGGAGACCAGATAGTCGGCGAATTGAGCGCTGAAATCGTGAATTA CCGGTATGATGCGTTGGTTGTGTTGAAAAAACTTCACTCCCTGGACAAAT ACGAATACTTGCAAATGGTTTTCACAAAAGACTAAAAGTAATCGAATGAG TTTCAGAAGGAGCTCGTCTGTACATTGTGCCCTGGACCATCCGTGATTGC TAATAATATTCGTAAATTGAATGAACAGGGGTGGATACTTTATTGTATGT GTCCGCTCATTTTGAAATTCAGGTGAACACTTTTAATTTGTGGTGAAAAC CATTTGCAAGTATTCGTATTTGTCCGGGATTAACAACGTTCCTTCTTGCA TTTTTTCGATTTCCACTCTTCTTACGCAGCAACATAACATTCGTCAGACC ATCGGAAGGCTCACGGTTAGGGTTTGGGATATGCGCTCTTCGCTTTCTTT GTCGCTCCAGCTTGCTACCACAACGCACCTCCAACACCTCCAGGGTGGAG CACATTGTCCGTGGGCAGAGCTCCCATCCAAACCGAAGGTTTCTTTCTCG TATAGTTGAATCTTCGACCTGTGGCCTCAATCATCGAACGTCGATATTGC ATAAAGAAGTTTTCGTTAGCTACCCCGCGGCGCGCTCCTCTGATTCCTGA CCGTCACTTGCTTTCCTCACCGCCAATTTATTATTCAGGAGCCGATGGGA CAATGTCTCATCGGCATTCAGCTCTACCCTGCGAAGAGGGCCCAAATGCA GGCAGGCGGTACTGGTCGCTTGGAGCCGAACAACTCCCCGTTCCTACCCC CTCCTTCTGGACGCTTGTCGTTCACCTGGAACCCCTTCTCGATGTTGTAT CAGCTATTGGGGCCGCGTCTTTGCACAATCCTGGCGTGCTTGGTGTGCGT GGTACTTGTGATCGCAATGTTGATTCTGTTCCAGCCTGTCTGGAATTTGT TGATTGTTATTTTTGTAAAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig33034:806..2028+

>mRNA_H-paniculata_contig33034.8865.1 ID=mRNA_H-paniculata_contig33034.8865.1|Name=mRNA_H-paniculata_contig33034.8865.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig33034:806..2028+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGACATGACAGGTCTTAGCAGCGACGATCCCCCGGATACTAAGTG
GGTCAAGATGGAGAAGACCAACAAGAGAACGGGCAGAAAGATGAAGGACA
TGACAGGTCTTAGCAGCGACGATCCCCCGGATACTAAGTGGGTCAAGATG
GAGAAGACCAACAAGAGAACGGGCAGAAAGGAGCCGATGGGACAATGTCT
CATCGGCATTCAGCTCTACCCTGCGAAGAGGGCCCAAATGCAGGCAGGCG
GTACTGGTCGCTTGGAGCCGAACAACTCCCCGTTCCTACCCCCTCCTTCT
GGACGCTTGTCGTTCACCTGGAACCCCTTCTCGATGTTGTATCAGCTATT
GGGGCCGCGTCTTTGCACAATCCTGGCGTGCTTGGTGTGCGTGGTACTTG
TGATCGCAATGTTGATTCTGTTCCAGCCTGTCTGGAATTTGTTGATTGTT
ATTTTTGTAAAGTAAGAGCCGATGGGACAATGTCTCATCGGCATTCAGCT
CTACCCTGCGAAGAGGGCCCAAATGCAGGCAGGCGGTACTGGTCGCTTGG
AGCCGAACAACTCCCCGTTCCTACCCCCTCCTTCTGGACGCTTGTCGTTC
ACCTGGAACCCCTTCTCGATGTTGTATCAGCTATTGGGGCCGCGTCTTTG
CACAATCCTGGCGTGCTTGGTGTGCGTGGTACTTGTGATCGCAATGTTGA
TTCTGTTCCAGCCTGTCTGGAATTTGTTGATTGTTATTTTTGTAAAGTAA
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