mRNA_H-paniculata_contig33004.8857.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33004.8857.1
Unique NamemRNA_H-paniculata_contig33004.8857.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33004.8857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33004contigH-paniculata_contig33004:1314..1581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size228
Cds size186
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33004.8857.1prot_H-paniculata_contig33004.8857.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33004 1314..1541 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930020.759309-CDS-H-paniculata_contig33004:1313..14741622930020.759309-CDS-H-paniculata_contig33004:1313..1474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33004 1314..1474 +
1691481113.3266265-CDS-H-paniculata_contig33004:1313..14741691481113.3266265-CDS-H-paniculata_contig33004:1313..1474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33004 1314..1474 +
1622930020.7781894-CDS-H-paniculata_contig33004:1516..15411622930020.7781894-CDS-H-paniculata_contig33004:1516..1541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33004 1517..1541 +
1691481113.3383853-CDS-H-paniculata_contig33004:1516..15411691481113.3383853-CDS-H-paniculata_contig33004:1516..1541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33004 1517..1541 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930020.7928677-UTR-H-paniculata_contig33004:1541..15811622930020.7928677-UTR-H-paniculata_contig33004:1541..1581Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33004 1542..1581 +
1691481113.3497565-UTR-H-paniculata_contig33004:1541..15811691481113.3497565-UTR-H-paniculata_contig33004:1541..1581Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33004 1542..1581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33004.8857.1

>prot_H-paniculata_contig33004.8857.1 ID=prot_H-paniculata_contig33004.8857.1|Name=mRNA_H-paniculata_contig33004.8857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
PYQEVDLYSIKLWYAAFDVCKVPYICRKRIATSWCRFVSYKVNSHPQAIN
IHSTKFLTGDV*
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mRNA from alignment at H-paniculata_contig33004:1314..1581+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33004.8857.1 ID=mRNA_H-paniculata_contig33004.8857.1|Name=mRNA_H-paniculata_contig33004.8857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=268bp|location=Sequence derived from alignment at H-paniculata_contig33004:1314..1581+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCATATCAAGAAGTTGATCTGTACTCCATCAAACTTTGGTACGCCGCTTT
TGACGTGTGTAAGGTACCGTATATCTGTCGCAAACGTATCGCTACCTCTT
GGTGTAGGTTCGTTTCCTACAAAGTCAACAGCCATCCTCAGGCCATCAAC
ATTCACTCTACGTATGACTTTGGCAGCGGTGCCAATCCCGCCGCGTGCAC
CAGCAAGTTCCTGACTGGTGATGTCTAGTCCCTCGTCCATGTCGGTAGCG
TTTCCTGTACTGCCACCG
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Coding sequence (CDS) from alignment at H-paniculata_contig33004:1314..1581+

>mRNA_H-paniculata_contig33004.8857.1 ID=mRNA_H-paniculata_contig33004.8857.1|Name=mRNA_H-paniculata_contig33004.8857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig33004:1314..1581+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCATATCAAGAAGTTGATCTGTACTCCATCAAACTTTGGTACGCCGCTTT
TGACGTGTGTAAGGTACCGTATATCTGTCGCAAACGTATCGCTACCTCTT
GGTGTAGGTTCGTTTCCTACAAAGTCAACAGCCATCCTCAGGCCATCAAC
ATTCACTCTACCCATATCAAGAAGTTGATCTGTACTCCATCAAACTTTGG
TACGCCGCTTTTGACGTGTGTAAGGTACCGTATATCTGTCGCAAACGTAT
CGCTACCTCTTGGTGTAGGTTCGTTTCCTACAAAGTCAACAGCCATCCTC
AGGCCATCAACATTCACTCTACCAAGTTCCTGACTGGTGATGTCTAGCAA
GTTCCTGACTGGTGATGTCTAG
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