mRNA_H-paniculata_contig330.8852.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig330.8852.1
Unique NamemRNA_H-paniculata_contig330.8852.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig330.8852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig330contigH-paniculata_contig330:23090..23512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size425
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930019.6858952-CDS-H-paniculata_contig330:23089..235121622930019.6858952-CDS-H-paniculata_contig330:23089..23512Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig330 23090..23512 +
1691481112.8343134-CDS-H-paniculata_contig330:23089..235121691481112.8343134-CDS-H-paniculata_contig330:23089..23512Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig330 23090..23512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig330.8852.1prot_H-paniculata_contig330.8852.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig330 23090..23512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig330.8852.1

>prot_H-paniculata_contig330.8852.1 ID=prot_H-paniculata_contig330.8852.1|Name=mRNA_H-paniculata_contig330.8852.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
GGEGEQEEVAAQAAAELQNEFSASASVMIHIAQNVSTHEAGIPPRVLKSS
RSRSRSSISTGGAGVVEGATALGAGNAPMSVRCRETDGSGHASPVETAST
HSSTGVGNTNSVRGREKQKEKEQMMLTMTWEAFLAQHTEVG
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mRNA from alignment at H-paniculata_contig330:23090..23512+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig330.8852.1 ID=mRNA_H-paniculata_contig330.8852.1|Name=mRNA_H-paniculata_contig330.8852.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=423bp|location=Sequence derived from alignment at H-paniculata_contig330:23090..23512+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGAGAGGGAGAGCAAGAGGAAGTTGCAGCACAAGCAGCTGCTGAGTT
GCAGAATGAGTTCTCGGCATCGGCATCAGTAATGATCCATATTGCACAGA
ATGTCTCCACGCACGAAGCAGGTATACCGCCCAGGGTTTTGAAGAGTAGC
CGCAGCCGCAGCCGCAGCAGTATCAGCACCGGCGGGGCGGGTGTAGTTGA
GGGTGCTACCGCGTTAGGTGCAGGAAATGCGCCGATGTCTGTTCGTTGTC
GGGAGACAGACGGGAGCGGCCACGCCAGTCCCGTGGAAACAGCGAGCACG
CATAGCAGCACGGGGGTGGGCAACACAAACAGCGTCCGAGGAAGGGAGAA
GCAGAAGGAGAAGGAGCAAATGATGCTGACCATGACTTGGGAAGCGTTCT
TGGCGCAACATACGGAGGTGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig330:23090..23512+

>mRNA_H-paniculata_contig330.8852.1 ID=mRNA_H-paniculata_contig330.8852.1|Name=mRNA_H-paniculata_contig330.8852.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig330:23090..23512+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGAGAGGGAGAGCAAGAGGAAGTTGCAGCACAAGCAGCTGCTGAGTT
GCAGAATGAGTTCTCGGCATCGGCATCAGTAATGATCCATATTGCACAGA
ATGTCTCCACGCACGAAGCAGGTATACCGCCCAGGGTTTTGAAGAGTAGC
CGCAGCCGCAGCCGCAGCAGTATCAGCACCGGCGGGGCGGGTGTAGTTGA
GGGTGCTACCGCGTTAGGTGCAGGAAATGCGCCGATGTCTGTTCGTTGTC
GGGAGACAGACGGGAGCGGCCACGCCAGTCCCGTGGAAACAGCGAGCACG
CATAGCAGCACGGGGGTGGGCAACACAAACAGCGTCCGAGGAAGGGAGAA
GCAGAAGGAGAAGGAGCAAATGATGCTGACCATGACTTGGGAAGCGTTCT
TGGCGCAACATACGGAGGTGGGGGGGGGAGAGGGAGAGCAAGAGGAAGTT
GCAGCACAAGCAGCTGCTGAGTTGCAGAATGAGTTCTCGGCATCGGCATC
AGTAATGATCCATATTGCACAGAATGTCTCCACGCACGAAGCAGGTATAC
CGCCCAGGGTTTTGAAGAGTAGCCGCAGCCGCAGCCGCAGCAGTATCAGC
ACCGGCGGGGCGGGTGTAGTTGAGGGTGCTACCGCGTTAGGTGCAGGAAA
TGCGCCGATGTCTGTTCGTTGTCGGGAGACAGACGGGAGCGGCCACGCCA
GTCCCGTGGAAACAGCGAGCACGCATAGCAGCACGGGGGTGGGCAACACA
AACAGCGTCCGAGGAAGGGAGAAGCAGAAGGAGAAGGAGCAAATGATGCT
GACCATGACTTGGGAAGCGTTCTTGGCGCAACATACGGAGGTGGGG
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