mRNA_H-paniculata_contig330.8851.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig330.8851.1
Unique NamemRNA_H-paniculata_contig330.8851.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig330.8851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig330contigH-paniculata_contig330:21596..23074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size430
Cds size429
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930019.639615-CDS-H-paniculata_contig330:21595..217421622930019.639615-CDS-H-paniculata_contig330:21595..21742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig330 21596..21742 +
1691481112.8167248-CDS-H-paniculata_contig330:21595..217421691481112.8167248-CDS-H-paniculata_contig330:21595..21742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig330 21596..21742 +
1622930019.650569-CDS-H-paniculata_contig330:22792..230741622930019.650569-CDS-H-paniculata_contig330:22792..23074Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig330 22793..23074 +
1691481112.8255703-CDS-H-paniculata_contig330:22792..230741691481112.8255703-CDS-H-paniculata_contig330:22792..23074Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig330 22793..23074 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig330.8851.1prot_H-paniculata_contig330.8851.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig330 21596..23074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig330.8851.1

>prot_H-paniculata_contig330.8851.1 ID=prot_H-paniculata_contig330.8851.1|Name=mRNA_H-paniculata_contig330.8851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp
MLTESASKSFGLETCPSNATTPARIHQGGLLSSSFPVTPEDRGRSSRSEG
VVVTPTHRSHSSFTNAFWDMRHQHDLEHPSEPKHLMGEPTRIPSNDDGTM
TAAAAAAAGKAGGRRNECGTDRLSLDTVVDADNGRAVGGQGGE
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mRNA from alignment at H-paniculata_contig330:21596..23074+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig330.8851.1 ID=mRNA_H-paniculata_contig330.8851.1|Name=mRNA_H-paniculata_contig330.8851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1479bp|location=Sequence derived from alignment at H-paniculata_contig330:21596..23074+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCACGGAAAGTGCGAGCAAGAGCTTCGGATTAGAAACTTGTCCCTC
GAATGCAACAACCCCCGCCAGAATTCATCAAGGAGGGCTGCTGTCCAGCA
GCTTTCCTGTCACCCCGGAAGACCGCGGGAGATCCTCACGATCAGAGGTG
AGTTCTAAAAGTCTCCGGTCTGGGTTGTAGGTAGTCCTGATGAGATTGTA
CCCATTGACGAGGTTCCTCAGTGCCCAAAAGCGAGCACTCGCCCGGGTGG
GAAAGACCCCGCAACGCGTCCGTTGCCACCGACTGTACTGTGTTTTGATT
TCTTTTGAAGAATTAAAAATTGATTGCGGTGCATGAGAGTTTTGCCATTT
GAGATGCCTTCGACTGCCACAACAGTTTTCTACTAAGTGTGCGTTTTCAG
TTCATCTCCTTAGGCGCAAACGCTTTCGGTTTCGCTTCTACGTGTACTCA
AGTCCGGGAGGCTCCACCGCGCAATCTGTATTATGTTCATAATGCTTGTC
CCCTGGGCGCACGAACACGGTGTAGTTGTACACCAACGCGGGGGTTCGGT
TGTTAACTTGATGACTGCTAGATCGGCCCGCGCATCACCAAAGTCAAGTC
CTGCCGCGTTCTGGGTGTTGCCTCAAAATTGATCAAGGTGCCAGCCTACT
TCTATTTCACTTGTATGTAGAGACTTCACTTGGTTGGTATTTCTGTAGGT
CCCGTGGAAATCAGTTGTTTGGTCAGTTGCTTCATATTTGATTTCTGGCG
TAAAGCAGAGAGCGGGTCGTTGAGGGTACAGCGCACCTACCACAGGCAAC
AGAATCAGGTTACTCCGTTTTCGCGTCACCTGCTACACCCTATCGGGCAT
TATTATTCATACTCAACCAAGAGGGTCCTTTTGAGGGTATTTCAAAGAAG
AATTCTGTTATCATCTTTATCTTCGAAATCTAACTTTCAATGTGTGTACC
GCAGTGGGACATGTGTGGAGTCCATATAAATATTGAATGTTTACGTGTAT
GTAAATTCGTAAATTCGGACCCTGTTCCTCTGTGTTTTTTTTAATTACAA
TCATGACTAATCAGTCTCGTCGTCATGCAGTGTTCGGAGCCCACCCCCTA
GCCTAAATCAACTTAACTTTGGAATAAGTATCTCCTGCTACAACAAGCAC
AGAGAGAAACATCCACCTCGTCGTCTATGCCTCTGAAATGATCACAGGGT
GTAGTCGTCACACCAACGCACCGCTCTCATTCAAGCTTTACCAACGCTTT
TTGGGATATGCGACACCAGCATGACTTGGAGCACCCTTCAGAACCGAAGC
ACTTGATGGGAGAGCCCACCCGAATTCCATCAAATGATGATGGCACAATG
ACGGCGGCGGCGGCTGCTGCGGCGGGGAAAGCAGGAGGGAGGAGAAACGA
ATGCGGAACCGACCGCTTGAGTTTAGATACTGTTGTAGATGCGGATAATG
GTAGAGCAGTAGGCGGGCAAGGTGGGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig330:21596..23074+

>mRNA_H-paniculata_contig330.8851.1 ID=mRNA_H-paniculata_contig330.8851.1|Name=mRNA_H-paniculata_contig330.8851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig330:21596..23074+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCACGGAAAGTGCGAGCAAGAGCTTCGGATTAGAAACTTGTCCCTC
GAATGCAACAACCCCCGCCAGAATTCATCAAGGAGGGCTGCTGTCCAGCA
GCTTTCCTGTCACCCCGGAAGACCGCGGGAGATCCTCACGATCAGAGATG
CTCACGGAAAGTGCGAGCAAGAGCTTCGGATTAGAAACTTGTCCCTCGAA
TGCAACAACCCCCGCCAGAATTCATCAAGGAGGGCTGCTGTCCAGCAGCT
TTCCTGTCACCCCGGAAGACCGCGGGAGATCCTCACGATCAGAGGGTGTA
GTCGTCACACCAACGCACCGCTCTCATTCAAGCTTTACCAACGCTTTTTG
GGATATGCGACACCAGCATGACTTGGAGCACCCTTCAGAACCGAAGCACT
TGATGGGAGAGCCCACCCGAATTCCATCAAATGATGATGGCACAATGACG
GCGGCGGCGGCTGCTGCGGCGGGGAAAGCAGGAGGGAGGAGAAACGAATG
CGGAACCGACCGCTTGAGTTTAGATACTGTTGTAGATGCGGATAATGGTA
GAGCAGTAGGCGGGCAAGGTGGGGAGGGTGTAGTCGTCACACCAACGCAC
CGCTCTCATTCAAGCTTTACCAACGCTTTTTGGGATATGCGACACCAGCA
TGACTTGGAGCACCCTTCAGAACCGAAGCACTTGATGGGAGAGCCCACCC
GAATTCCATCAAATGATGATGGCACAATGACGGCGGCGGCGGCTGCTGCG
GCGGGGAAAGCAGGAGGGAGGAGAAACGAATGCGGAACCGACCGCTTGAG
TTTAGATACTGTTGTAGATGCGGATAATGGTAGAGCAGTAGGCGGGCAAG
GTGGGGAG
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