mRNA_H-paniculata_contig330.8850.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig330.8850.1 vs. uniprot
Match: D7G6L5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L5_ECTSI) HSP 1 Score: 267 bits (682), Expect = 1.030e-79 Identity = 160/305 (52.46%), Postives = 196/305 (64.26%), Query Frame = 3
Query: 138 MLVKQTMQSLVLGLGIWHASG-FVSVGARSTHKLPQAAGVGGDRLTMALPQAKQQCLGLLHRARGGQLFQRRQAVAIPEVEVKPQETRFVAPSHPAEPEKKGLFNAYLRALDKKPMRTKIITSGVICGIGDIMAQALMF-TQASGAVTLGKFVRSVELQRFSIYTFLGAFWIAPFVHYWFDTLESITKSPEG----PPRTFVGRMGKALKMVTLDQSIGAPLVNAGMMFLFSLMTAFLADGIGMRAGKAAGVMVKDKLWGTMLTCWKVWPAANLINFAFVPAPLRVLFMNVVGLGWNIYLAGAVN 1034
M+ + + SL L L HAS F V +P A A+ +QQ LG++ RARGG L +RR VA+P P V S GL +YLRALD KP+ TK++TSGVICGIGDIMAQAL F T A+ + TLG F+ ++E +R +IY LGA WIAP VHYWFD LE+ TK + P +F RM KALKMVTLDQ+IGAPL+NAG MFLF+ TA + G+ +GK AG MVK+ +W TML CWK+WP AN+INFAFVPA LRVLF+N VGLGWNIYL+ AVN
Sbjct: 1 MVNSRQLLSLALALCSCHASSAFAGVVTTRGGGVPSPAATP----PRAIDGVEQQ-LGVVRRARGGVLLRRR-GVAVPA----PDNGGLVVESGNKNGGD-GLLASYLRALDTKPIITKVVTSGVICGIGDIMAQALAFKTAATESFTLGSFLAALEFKRLAIYGVLGALWIAPVVHYWFDALEAATKDKKAVAGAPAPSFAMRMFKALKMVTLDQTIGAPLINAGFMFLFTFATALTSGAGGIESGKKAGTMVKNGIWSTMLVCWKLWPIANMINFAFVPAKLRVLFLNFVGLGWNIYLSAAVN 294
BLAST of mRNA_H-paniculata_contig330.8850.1 vs. uniprot
Match: D6PWV8_9PHAE (PXMP2/4 family protein 2 (Fragment) n=5 Tax=Fucus TaxID=3011 RepID=D6PWV8_9PHAE) HSP 1 Score: 232 bits (591), Expect = 1.180e-67 Identity = 116/201 (57.71%), Postives = 144/201 (71.64%), Query Frame = 3
Query: 429 EKKGLFNAYLRALDKKPMRTKIITSGVICGIGDIMAQALMFTQASGAVT---LGKFVRSVELQRFSIYTFLGAFWIAPFVHYWFDTLESITKSPEGPPRTFVGRMGKALKMVTLDQSIGAPLVNAGMMFLFSLMTAFLADGIGMRAGKAAGVMVKDKLWGTMLTCWKVWPAANLINFAFVPAPLRVLFMNVVGLGWNIYLA 1022
EK G+ N YLR LD++P+ TK+ITSGVIC IGD++AQAL F+ + AVT L F ++E +R +IY LGA W+AP HYWFD LE K P TF G+M KALKMVT+DQ IGAP+VNAG MFLF+L TA ++ A K AG V+D + GTML CW++WP ANLINFA+VP LRVLF+N VGLGWNI+L+
Sbjct: 14 EKPGVLNKYLRVLDRRPLETKMITSGVICAIGDVVAQALSFSNS--AVTPNNLRSFANALEFKRLAIYGALGAVWVAPLCHYWFDALEDFFKGDNNPLDTFKGKMIKALKMVTVDQGIGAPVVNAGFMFLFTLATAMVSGTSPTSAFKKAGRFVRDNIKGTMLVCWRLWPVANLINFAYVPPKLRVLFLNFVGLGWNIFLS 212
BLAST of mRNA_H-paniculata_contig330.8850.1 vs. uniprot
Match: A0A6H5K3K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K4_9PHAE) HSP 1 Score: 213 bits (541), Expect = 5.970e-58 Identity = 156/408 (38.24%), Postives = 190/408 (46.57%), Query Frame = 3
Query: 162 SLVLGLGIWHA-SGFVSVGARSTHKLPQAAGVGGDRLTMALPQAKQQCLG------LLHRARGGQLFQRRQAVAIPEVEVKPQETRFVAPSHPAEPEKKGLFNAYLRALDKKPMRTKI---ITSGVICGIGDIMAQALMF-TQASGAVTLGKFVRSVELQRFSIYT------------------------------------------------------------------------------------------------------FLGAFWIAPFVHYWFDTLESITKS----PEGPPRTFVGRMGKALKMVTLDQSIGAPLVNAGMMFLFSLMTAFLADGIGMRAGKAAGVMVKDKLWGTMLTCWKVWPAANLINFAFVPAPLRVLFMNVVGLGWNIYLAGAVN 1034
SLVL L HA S F V +P A + Q ++ L ++ RARGG L +RR VA+P P ++ V S GL +YLRALD KP+ TK+ TSGVICGIGDIMAQAL F T A+ + +LG F+ ++E +R +IY LGA WIAP VHYWFDTLE+ K P P +F RM KALKMV LDQ IGAPLVNAG MFLF+ TA + G+ +GK AG+MVK+ +WGTML CWK+WP AN+INF +VP LRVLFMN VGLGWNIYL+ AVN
Sbjct: 9 SLVLALCSCHACSAFAGVVTTRGGGVPSPAATPPRAIDSVEQQLGEESLSRWNETCVVRRARGGALLRRR-GVAVPA----PDQSGLVVESGDKNGAD-GLLASYLRALDTKPLITKVYQVFTSGVICGIGDIMAQALAFKTAATESFSLGSFLAALEFKRLAIYGETCLRVLPRMGIFSRLFSFCLGSSGRGVIHRHLYLRWCRERKIYRWRINKLEVEETRVEFQEEMAVNDKKFSELIEAMGTPKDAKGRDQAGSRNHRRVGKAGVLGALWIAPVVHYWFDTLEAAFKDKKAVPGAPAPSFSTRMVKALKMVILDQGIGAPLVNAGFMFLFTFATALTSGTGGIESGKKAGIMVKNGIWGTMLVCWKLWPIANMINFLYVPVKLRVLFMNFVGLGWNIYLSAAVN 410
BLAST of mRNA_H-paniculata_contig330.8850.1 vs. uniprot
Match: A0A835YM13_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM13_9STRA) HSP 1 Score: 152 bits (385), Expect = 1.190e-38 Identity = 81/209 (38.76%), Postives = 128/209 (61.24%), Query Frame = 3
Query: 432 KKGLFNAYLRALDKKPMRTKIITSGVICGIGDIMAQALMFTQASGAVTLGKFVRSVELQRFSIYTFLGAFWIAPFVHYWFDTLES-ITKSPEGP------PRTFVGRMGKALKMVTLDQSIGAPLVNAGMMFLFSLMTAFLADGIGMRAGKAAG-VMVKDKLWGTMLTCWKVWPAANLINFAFVPAPLRVLFMNVVGLGWNIYLAGAVN 1034
K+ + + Y+ L+++P+ TK+ T+ +IC +GD+ QA+ GA +L R+ +++R +Y +GA ++AP HYW+ L+S I K+P G P T R+ ALKM+ +DQ+I +P+VN+G +F ++ T LA G G A +G V+ LW T++ WK+WPAAN +NF FVP LR LF++VVG+ WN+ L+ N
Sbjct: 11 KRSIVDRYMAILERRPLYTKMATNYLICFLGDVSCQAM------GAGSLRALSRAFDVKRAVLYGSMGALYLAPLAHYWYGALDSAIVKTPAGQVDGAEKPSTAT-RVTGALKMLFIDQAIASPIVNSGFLFAYAAFTG-LAGGSGFGAALHSGSAKVQSALWPTLVASWKIWPAANFLNFMFVPLQLRALFLSVVGVAWNLVLSSIAN 211
BLAST of mRNA_H-paniculata_contig330.8850.1 vs. uniprot
Match: A0A835YMP8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP8_9STRA) HSP 1 Score: 121 bits (304), Expect = 4.020e-27 Identity = 73/202 (36.14%), Postives = 113/202 (55.94%), Query Frame = 3
Query: 441 LFNAYLRALDKKPMRTKIITSGVICGIGDIMAQALMFTQASGAVTLG-KFVRSVELQRFSIYTFLGAFWIAPFVHYWFDTLESITKSPEGPPRTFVGRMGKALKMVTLDQSIGAPLVNAGMMFLFSLMTAFLADGI---GMRAGKAAGVMVKDKLWGTMLTCWKVWPAANLINFAFVPAPLRVLFMNVVGLGWNIYLAGAVN 1034
L+N YL LD++P+ TK TS +I IGD +AQ L A T G FV + QR +IY F + VHYW++ L+ +P T G+ + + + +DQ++G ++NAG + ++++A + + G A G + ++ +W ++ WK+WPAAN INF+ VP LRVLF N V + WNIYL+G+ N
Sbjct: 75 LWNKYLGQLDRRPLITKAWTSTIIGCIGDTIAQVLE------ARTKGIPFV--FDTQRTAIYIFCAVAIGSTAVHYWYNFLDQKVANPN----TVKGKWNRVFRQLAVDQTVGCTVLNAGFYIVHTIVSAVVMGRVFPLGALADTITGKLSRE-MWPMLINNWKLWPAANFINFSLVPPQLRVLFANFVAIFWNIYLSGSAN 263
BLAST of mRNA_H-paniculata_contig330.8850.1 vs. uniprot
Match: A0A836CMN9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMN9_9STRA) HSP 1 Score: 111 bits (278), Expect = 1.360e-23 Identity = 72/232 (31.03%), Postives = 115/232 (49.57%), Query Frame = 3
Query: 384 PQETRFVAPSHPAEPEKKGLFNAYLRALDKKPMRTKIITSGVICGIGDIMAQALMFTQASGAVTLGKFVRSVELQRFSIYTFLGAFWIAPFVHYWFDTLESITKSPEGPPRTFVGRMGKALKMVTLDQSIGAPLVNAGMMFLFSLMTAFLADGIGMRAGKAAGVM----------------VKDK---LWGTMLTCWKVWPAANLINFAFVPAPLRVLFMNVVGLGWNIYLA 1022
PQ++ P +P EP YL L ++P+ TK++TS ++CG+GD + Q L A G G +++ +R +Y+ +G ++AP D + P + + + KAL M +D ++ +PL+N G +++F+ LA G + AG+ + DK LW T+L WK+WP AN NF VP LRVL++NVVGL W+ L+
Sbjct: 64 PQQSTITLPQNPTEP----FVRWYLATLKRRPLPTKMVTSAIVCGLGDAICQMLT---AGG---FGALRHALDFRRLVLYSTMGGLYVAP------DMV---------PGKVTLVKAKKALNMTFID-TLASPLINGGFLYVFTAANC-LASGAAVTGAAGAGLEKLQVLANLMRIANLNNIVDKNTCLWPTLLASWKMWPLANFFNFLLVPPHLRVLYLNVVGLVWHTVLS 268
BLAST of mRNA_H-paniculata_contig330.8850.1 vs. uniprot
Match: A0A139A1W5_GONPJ (Uncharacterized protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139A1W5_GONPJ) HSP 1 Score: 109 bits (272), Expect = 4.290e-23 Identity = 73/236 (30.93%), Postives = 116/236 (49.15%), Query Frame = 3
Query: 441 LFNAYLRALDKKPMRTKIITSGVICGIGDIMAQALMFTQASGAVTLGKFVRSVELQRFSI---YTFL--------GAFWIAPFVHYWFDTLESITKSPEGPPRTFVGRMGKALKMVTLDQSIGAPLVNAGMMFLFSLMTAFLADGI--GMRAGKAAGVMVKDKLWGTMLTCWKVWPAANLINFAFVPAPLRVLFMNVVGLGWNIYLAGAVN*FSARD*CDGVILIVCAIYGEREET 1109
+ +AYL L P+ TK TS ++ GD++AQ L AS +++LG+ RS ++ S +TF+ G F AP H+W+ L+ + + AL V +DQ + AP FS+ F G+ G A + + +D +W T++T W VWP +++F FVPA LRVL++NV+GLGWN YL+ + D D + L + +E++
Sbjct: 1 MLSAYLALLSSYPILTKSTTSAILAACGDLLAQVLENWNASRSISLGEDGRSSSRRQCSFPFTFTFVRTLRLASYGFFVAAPMSHFWYIILDHLVGHGTD--------ISVALAKVAIDQILMAP---------FSVNLFFTYQGLLQGWTARRIRATLARD-VWPTLVTSWAVWPIVQMVSFMFVPADLRVLWVNVIGLGWNTYLSLVQQRATENDPVDHIELEIVEHTDVKEDS 218
BLAST of mRNA_H-paniculata_contig330.8850.1 vs. uniprot
Match: A0A2R5GQ05_9STRA (Mpv17-like protein 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQ05_9STRA) HSP 1 Score: 104 bits (260), Expect = 7.830e-22 Identity = 66/210 (31.43%), Postives = 105/210 (50.00%), Query Frame = 3
Query: 450 AYLRALDKKPMRTKIITSGVICGIGDIMAQALMFTQASGAVTLGKFVRSVELQRFSIYTFLGAFWIAPFVHYWFDTLESITKSPEGPPRTFVGRMGKALKMVTLDQSIGAPLVNAGMMFLFSLMTAFLADGIGMRAGKAAGVMVKDKLWGTMLTCWKVWPAANLINFAFVPAPLRVLFMNVVGLGWNIYLAGAVN*FSARD*CDGVILIV 1079
AY R L + P+RTK+ ++ VI G GD++ Q + Q A G R +Y GA W++PF+H W+ L+ + K G RT A++ + LDQ+ A M +F + ++L G + + ++ KLW TML W +WPA +NF VP RVL +N+VG+GW+++L+ N + + D +V
Sbjct: 18 AYNRGLTEAPLRTKVASACVIYGTGDVVVQKMQGMQQWDAPRTG---------RMLVY---GAMWLSPFLHGWYRVLDVMVK---GTGRT------AAVQKIVLDQTFAA----TANMTMFHSINSYLETG----SLNSVADRLRAKLWPTMLALWTIWPAVQYVNFTMVPLRQRVLVVNIVGVGWSMFLSYMGNTKTTPESLDAASRLV 198
BLAST of mRNA_H-paniculata_contig330.8850.1 vs. uniprot
Match: A0A388JVN7_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JVN7_CHABU) HSP 1 Score: 102 bits (255), Expect = 1.640e-21 Identity = 63/192 (32.81%), Postives = 92/192 (47.92%), Query Frame = 3
Query: 441 LFNAYLRALDKKPMRTKIITSGVICGIGDIMAQALMFTQASGAVTLGKFVRSVELQRFSIYTFLGAFWIAPFVHYWFDTLESITKSPEGPPRTFVGRMGKA--LKMVTLDQSIGAPLVNAGMMFLFSLMTAFLADGIGMRAGKAAGVMVKDKLWGTMLTCWKVWPAANLINFAFVPAPLRVLFMNVVGLGWN 1010
L+ Y+RAL ++P+RTK++TSG + G+ D MAQ + T S++L R ++ G W+ P HYW + ES F R A ++ V ++Q P+ N MM L+ I +A ++ L + WK+WP A LIN FVP LRVLFMN+V L W+
Sbjct: 10 LWRKYVRALRRRPLRTKMLTSGTLMGVSDAMAQKISGTD------------SIKLWRTALMALYGLLWVGPTGHYWHEVCESF----------FSKRRDNATVIRKVAVEQLTYGPVQNVSMMIYLGLI-------IKGKAWNTVVSKIRADLLRVQVAAWKIWPLAALINHKFVPIQLRVLFMNLVALFWS 172
BLAST of mRNA_H-paniculata_contig330.8850.1 vs. uniprot
Match: A0A7S3Y660_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y660_HETAK) HSP 1 Score: 105 bits (263), Expect = 1.930e-21 Identity = 66/185 (35.68%), Postives = 100/185 (54.05%), Query Frame = 3
Query: 486 TKIITSGVICGIGDIMAQALMFTQASGAVTLGKFVRSVELQRFSIYTFLGAFWIAPFVHYWFDTLESITKSPEGPPRTFVGRMGKALKMVTLDQSIGAPLVNAGMMFLFSLMTAFLAD--GIGMRAGKAAGVMVKDKLWGTMLTCWKVWPAANLINFAFVPAPLRVLFMNVVGLGWNIYLAGAVN 1034
T++ TSGVI +GD + Q L+ +A +L +++RF ++ F+GAF+ +H WF L++ S P + K++ M+ +DQ+ GA VNAG M LF L+ A G A M+K+ + +L +K+WPAAN +NF VP LR+LF NVV L +N L+ VN
Sbjct: 116 TRMTTSGVISALGDFLCQYLVAVKAGNPFSL-------DVRRFLVFGFMGAFYFGTVIHAWFTRLDAFA-SKRFPNKE--DHFKKSVAMICIDQTCGAVSVNAGFMLLFPLVNALTLGTFSFGTSFSAAWNDMLKNMI-PVLLVNYKIWPAANFMNFLVVPLQLRLLFTNVVSLVYNALLSLIVN 289 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig330.8850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig330.8850.1 >prot_H-paniculata_contig330.8850.1 ID=prot_H-paniculata_contig330.8850.1|Name=mRNA_H-paniculata_contig330.8850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=300bp MLVKQTMQSLVLGLGIWHASGFVSVGARSTHKLPQAAGVGGDRLTMALPQback to top mRNA from alignment at H-paniculata_contig330:9837..14025+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig330.8850.1 ID=mRNA_H-paniculata_contig330.8850.1|Name=mRNA_H-paniculata_contig330.8850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4189bp|location=Sequence derived from alignment at H-paniculata_contig330:9837..14025+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig330:9837..14025+ >mRNA_H-paniculata_contig330.8850.1 ID=mRNA_H-paniculata_contig330.8850.1|Name=mRNA_H-paniculata_contig330.8850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1800bp|location=Sequence derived from alignment at H-paniculata_contig330:9837..14025+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |