mRNA_H-paniculata_contig330.8850.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig330.8850.1
Unique NamemRNA_H-paniculata_contig330.8850.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig330.8850.1 vs. uniprot
Match: D7G6L5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L5_ECTSI)

HSP 1 Score: 267 bits (682), Expect = 1.030e-79
Identity = 160/305 (52.46%), Postives = 196/305 (64.26%), Query Frame = 3
Query:  138 MLVKQTMQSLVLGLGIWHASG-FVSVGARSTHKLPQAAGVGGDRLTMALPQAKQQCLGLLHRARGGQLFQRRQAVAIPEVEVKPQETRFVAPSHPAEPEKKGLFNAYLRALDKKPMRTKIITSGVICGIGDIMAQALMF-TQASGAVTLGKFVRSVELQRFSIYTFLGAFWIAPFVHYWFDTLESITKSPEG----PPRTFVGRMGKALKMVTLDQSIGAPLVNAGMMFLFSLMTAFLADGIGMRAGKAAGVMVKDKLWGTMLTCWKVWPAANLINFAFVPAPLRVLFMNVVGLGWNIYLAGAVN 1034
            M+  + + SL L L   HAS  F  V       +P  A         A+   +QQ LG++ RARGG L +RR  VA+P     P     V  S        GL  +YLRALD KP+ TK++TSGVICGIGDIMAQAL F T A+ + TLG F+ ++E +R +IY  LGA WIAP VHYWFD LE+ TK  +     P  +F  RM KALKMVTLDQ+IGAPL+NAG MFLF+  TA  +   G+ +GK AG MVK+ +W TML CWK+WP AN+INFAFVPA LRVLF+N VGLGWNIYL+ AVN
Sbjct:    1 MVNSRQLLSLALALCSCHASSAFAGVVTTRGGGVPSPAATP----PRAIDGVEQQ-LGVVRRARGGVLLRRR-GVAVPA----PDNGGLVVESGNKNGGD-GLLASYLRALDTKPIITKVVTSGVICGIGDIMAQALAFKTAATESFTLGSFLAALEFKRLAIYGVLGALWIAPVVHYWFDALEAATKDKKAVAGAPAPSFAMRMFKALKMVTLDQTIGAPLINAGFMFLFTFATALTSGAGGIESGKKAGTMVKNGIWSTMLVCWKLWPIANMINFAFVPAKLRVLFLNFVGLGWNIYLSAAVN 294          
BLAST of mRNA_H-paniculata_contig330.8850.1 vs. uniprot
Match: D6PWV8_9PHAE (PXMP2/4 family protein 2 (Fragment) n=5 Tax=Fucus TaxID=3011 RepID=D6PWV8_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 1.180e-67
Identity = 116/201 (57.71%), Postives = 144/201 (71.64%), Query Frame = 3
Query:  429 EKKGLFNAYLRALDKKPMRTKIITSGVICGIGDIMAQALMFTQASGAVT---LGKFVRSVELQRFSIYTFLGAFWIAPFVHYWFDTLESITKSPEGPPRTFVGRMGKALKMVTLDQSIGAPLVNAGMMFLFSLMTAFLADGIGMRAGKAAGVMVKDKLWGTMLTCWKVWPAANLINFAFVPAPLRVLFMNVVGLGWNIYLA 1022
            EK G+ N YLR LD++P+ TK+ITSGVIC IGD++AQAL F+ +  AVT   L  F  ++E +R +IY  LGA W+AP  HYWFD LE   K    P  TF G+M KALKMVT+DQ IGAP+VNAG MFLF+L TA ++      A K AG  V+D + GTML CW++WP ANLINFA+VP  LRVLF+N VGLGWNI+L+
Sbjct:   14 EKPGVLNKYLRVLDRRPLETKMITSGVICAIGDVVAQALSFSNS--AVTPNNLRSFANALEFKRLAIYGALGAVWVAPLCHYWFDALEDFFKGDNNPLDTFKGKMIKALKMVTVDQGIGAPVVNAGFMFLFTLATAMVSGTSPTSAFKKAGRFVRDNIKGTMLVCWRLWPVANLINFAYVPPKLRVLFLNFVGLGWNIFLS 212          
BLAST of mRNA_H-paniculata_contig330.8850.1 vs. uniprot
Match: A0A6H5K3K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K4_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 5.970e-58
Identity = 156/408 (38.24%), Postives = 190/408 (46.57%), Query Frame = 3
Query:  162 SLVLGLGIWHA-SGFVSVGARSTHKLPQAAGVGGDRLTMALPQAKQQCLG------LLHRARGGQLFQRRQAVAIPEVEVKPQETRFVAPSHPAEPEKKGLFNAYLRALDKKPMRTKI---ITSGVICGIGDIMAQALMF-TQASGAVTLGKFVRSVELQRFSIYT------------------------------------------------------------------------------------------------------FLGAFWIAPFVHYWFDTLESITKS----PEGPPRTFVGRMGKALKMVTLDQSIGAPLVNAGMMFLFSLMTAFLADGIGMRAGKAAGVMVKDKLWGTMLTCWKVWPAANLINFAFVPAPLRVLFMNVVGLGWNIYLAGAVN 1034
            SLVL L   HA S F  V       +P  A      +     Q  ++ L       ++ RARGG L +RR  VA+P     P ++  V  S        GL  +YLRALD KP+ TK+    TSGVICGIGDIMAQAL F T A+ + +LG F+ ++E +R +IY                                                                                                        LGA WIAP VHYWFDTLE+  K     P  P  +F  RM KALKMV LDQ IGAPLVNAG MFLF+  TA  +   G+ +GK AG+MVK+ +WGTML CWK+WP AN+INF +VP  LRVLFMN VGLGWNIYL+ AVN
Sbjct:    9 SLVLALCSCHACSAFAGVVTTRGGGVPSPAATPPRAIDSVEQQLGEESLSRWNETCVVRRARGGALLRRR-GVAVPA----PDQSGLVVESGDKNGAD-GLLASYLRALDTKPLITKVYQVFTSGVICGIGDIMAQALAFKTAATESFSLGSFLAALEFKRLAIYGETCLRVLPRMGIFSRLFSFCLGSSGRGVIHRHLYLRWCRERKIYRWRINKLEVEETRVEFQEEMAVNDKKFSELIEAMGTPKDAKGRDQAGSRNHRRVGKAGVLGALWIAPVVHYWFDTLEAAFKDKKAVPGAPAPSFSTRMVKALKMVILDQGIGAPLVNAGFMFLFTFATALTSGTGGIESGKKAGIMVKNGIWGTMLVCWKLWPIANMINFLYVPVKLRVLFMNFVGLGWNIYLSAAVN 410          
BLAST of mRNA_H-paniculata_contig330.8850.1 vs. uniprot
Match: A0A835YM13_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM13_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.190e-38
Identity = 81/209 (38.76%), Postives = 128/209 (61.24%), Query Frame = 3
Query:  432 KKGLFNAYLRALDKKPMRTKIITSGVICGIGDIMAQALMFTQASGAVTLGKFVRSVELQRFSIYTFLGAFWIAPFVHYWFDTLES-ITKSPEGP------PRTFVGRMGKALKMVTLDQSIGAPLVNAGMMFLFSLMTAFLADGIGMRAGKAAG-VMVKDKLWGTMLTCWKVWPAANLINFAFVPAPLRVLFMNVVGLGWNIYLAGAVN 1034
            K+ + + Y+  L+++P+ TK+ T+ +IC +GD+  QA+      GA +L    R+ +++R  +Y  +GA ++AP  HYW+  L+S I K+P G       P T   R+  ALKM+ +DQ+I +P+VN+G +F ++  T  LA G G  A   +G   V+  LW T++  WK+WPAAN +NF FVP  LR LF++VVG+ WN+ L+   N
Sbjct:   11 KRSIVDRYMAILERRPLYTKMATNYLICFLGDVSCQAM------GAGSLRALSRAFDVKRAVLYGSMGALYLAPLAHYWYGALDSAIVKTPAGQVDGAEKPSTAT-RVTGALKMLFIDQAIASPIVNSGFLFAYAAFTG-LAGGSGFGAALHSGSAKVQSALWPTLVASWKIWPAANFLNFMFVPLQLRALFLSVVGVAWNLVLSSIAN 211          
BLAST of mRNA_H-paniculata_contig330.8850.1 vs. uniprot
Match: A0A835YMP8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP8_9STRA)

HSP 1 Score: 121 bits (304), Expect = 4.020e-27
Identity = 73/202 (36.14%), Postives = 113/202 (55.94%), Query Frame = 3
Query:  441 LFNAYLRALDKKPMRTKIITSGVICGIGDIMAQALMFTQASGAVTLG-KFVRSVELQRFSIYTFLGAFWIAPFVHYWFDTLESITKSPEGPPRTFVGRMGKALKMVTLDQSIGAPLVNAGMMFLFSLMTAFLADGI---GMRAGKAAGVMVKDKLWGTMLTCWKVWPAANLINFAFVPAPLRVLFMNVVGLGWNIYLAGAVN 1034
            L+N YL  LD++P+ TK  TS +I  IGD +AQ L       A T G  FV   + QR +IY F      +  VHYW++ L+    +P     T  G+  +  + + +DQ++G  ++NAG   + ++++A +   +   G  A    G + ++ +W  ++  WK+WPAAN INF+ VP  LRVLF N V + WNIYL+G+ N
Sbjct:   75 LWNKYLGQLDRRPLITKAWTSTIIGCIGDTIAQVLE------ARTKGIPFV--FDTQRTAIYIFCAVAIGSTAVHYWYNFLDQKVANPN----TVKGKWNRVFRQLAVDQTVGCTVLNAGFYIVHTIVSAVVMGRVFPLGALADTITGKLSRE-MWPMLINNWKLWPAANFINFSLVPPQLRVLFANFVAIFWNIYLSGSAN 263          
BLAST of mRNA_H-paniculata_contig330.8850.1 vs. uniprot
Match: A0A836CMN9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMN9_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.360e-23
Identity = 72/232 (31.03%), Postives = 115/232 (49.57%), Query Frame = 3
Query:  384 PQETRFVAPSHPAEPEKKGLFNAYLRALDKKPMRTKIITSGVICGIGDIMAQALMFTQASGAVTLGKFVRSVELQRFSIYTFLGAFWIAPFVHYWFDTLESITKSPEGPPRTFVGRMGKALKMVTLDQSIGAPLVNAGMMFLFSLMTAFLADGIGMRAGKAAGVM----------------VKDK---LWGTMLTCWKVWPAANLINFAFVPAPLRVLFMNVVGLGWNIYLA 1022
            PQ++    P +P EP        YL  L ++P+ TK++TS ++CG+GD + Q L    A G    G    +++ +R  +Y+ +G  ++AP      D +         P +  + +  KAL M  +D ++ +PL+N G +++F+     LA G  +     AG+                 + DK   LW T+L  WK+WP AN  NF  VP  LRVL++NVVGL W+  L+
Sbjct:   64 PQQSTITLPQNPTEP----FVRWYLATLKRRPLPTKMVTSAIVCGLGDAICQMLT---AGG---FGALRHALDFRRLVLYSTMGGLYVAP------DMV---------PGKVTLVKAKKALNMTFID-TLASPLINGGFLYVFTAANC-LASGAAVTGAAGAGLEKLQVLANLMRIANLNNIVDKNTCLWPTLLASWKMWPLANFFNFLLVPPHLRVLYLNVVGLVWHTVLS 268          
BLAST of mRNA_H-paniculata_contig330.8850.1 vs. uniprot
Match: A0A139A1W5_GONPJ (Uncharacterized protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139A1W5_GONPJ)

HSP 1 Score: 109 bits (272), Expect = 4.290e-23
Identity = 73/236 (30.93%), Postives = 116/236 (49.15%), Query Frame = 3
Query:  441 LFNAYLRALDKKPMRTKIITSGVICGIGDIMAQALMFTQASGAVTLGKFVRSVELQRFSI---YTFL--------GAFWIAPFVHYWFDTLESITKSPEGPPRTFVGRMGKALKMVTLDQSIGAPLVNAGMMFLFSLMTAFLADGI--GMRAGKAAGVMVKDKLWGTMLTCWKVWPAANLINFAFVPAPLRVLFMNVVGLGWNIYLAGAVN*FSARD*CDGVILIVCAIYGEREET 1109
            + +AYL  L   P+ TK  TS ++   GD++AQ L    AS +++LG+  RS   ++ S    +TF+        G F  AP  H+W+  L+ +              +  AL  V +DQ + AP         FS+   F   G+  G  A +    + +D +W T++T W VWP   +++F FVPA LRVL++NV+GLGWN YL+      +  D  D + L +      +E++
Sbjct:    1 MLSAYLALLSSYPILTKSTTSAILAACGDLLAQVLENWNASRSISLGEDGRSSSRRQCSFPFTFTFVRTLRLASYGFFVAAPMSHFWYIILDHLVGHGTD--------ISVALAKVAIDQILMAP---------FSVNLFFTYQGLLQGWTARRIRATLARD-VWPTLVTSWAVWPIVQMVSFMFVPADLRVLWVNVIGLGWNTYLSLVQQRATENDPVDHIELEIVEHTDVKEDS 218          
BLAST of mRNA_H-paniculata_contig330.8850.1 vs. uniprot
Match: A0A2R5GQ05_9STRA (Mpv17-like protein 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQ05_9STRA)

HSP 1 Score: 104 bits (260), Expect = 7.830e-22
Identity = 66/210 (31.43%), Postives = 105/210 (50.00%), Query Frame = 3
Query:  450 AYLRALDKKPMRTKIITSGVICGIGDIMAQALMFTQASGAVTLGKFVRSVELQRFSIYTFLGAFWIAPFVHYWFDTLESITKSPEGPPRTFVGRMGKALKMVTLDQSIGAPLVNAGMMFLFSLMTAFLADGIGMRAGKAAGVMVKDKLWGTMLTCWKVWPAANLINFAFVPAPLRVLFMNVVGLGWNIYLAGAVN*FSARD*CDGVILIV 1079
            AY R L + P+RTK+ ++ VI G GD++ Q +   Q   A   G         R  +Y   GA W++PF+H W+  L+ + K   G  RT       A++ + LDQ+  A       M +F  + ++L  G    +  +    ++ KLW TML  W +WPA   +NF  VP   RVL +N+VG+GW+++L+   N  +  +  D    +V
Sbjct:   18 AYNRGLTEAPLRTKVASACVIYGTGDVVVQKMQGMQQWDAPRTG---------RMLVY---GAMWLSPFLHGWYRVLDVMVK---GTGRT------AAVQKIVLDQTFAA----TANMTMFHSINSYLETG----SLNSVADRLRAKLWPTMLALWTIWPAVQYVNFTMVPLRQRVLVVNIVGVGWSMFLSYMGNTKTTPESLDAASRLV 198          
BLAST of mRNA_H-paniculata_contig330.8850.1 vs. uniprot
Match: A0A388JVN7_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JVN7_CHABU)

HSP 1 Score: 102 bits (255), Expect = 1.640e-21
Identity = 63/192 (32.81%), Postives = 92/192 (47.92%), Query Frame = 3
Query:  441 LFNAYLRALDKKPMRTKIITSGVICGIGDIMAQALMFTQASGAVTLGKFVRSVELQRFSIYTFLGAFWIAPFVHYWFDTLESITKSPEGPPRTFVGRMGKA--LKMVTLDQSIGAPLVNAGMMFLFSLMTAFLADGIGMRAGKAAGVMVKDKLWGTMLTCWKVWPAANLINFAFVPAPLRVLFMNVVGLGWN 1010
            L+  Y+RAL ++P+RTK++TSG + G+ D MAQ +  T             S++L R ++    G  W+ P  HYW +  ES           F  R   A  ++ V ++Q    P+ N  MM    L+       I  +A       ++  L    +  WK+WP A LIN  FVP  LRVLFMN+V L W+
Sbjct:   10 LWRKYVRALRRRPLRTKMLTSGTLMGVSDAMAQKISGTD------------SIKLWRTALMALYGLLWVGPTGHYWHEVCESF----------FSKRRDNATVIRKVAVEQLTYGPVQNVSMMIYLGLI-------IKGKAWNTVVSKIRADLLRVQVAAWKIWPLAALINHKFVPIQLRVLFMNLVALFWS 172          
BLAST of mRNA_H-paniculata_contig330.8850.1 vs. uniprot
Match: A0A7S3Y660_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y660_HETAK)

HSP 1 Score: 105 bits (263), Expect = 1.930e-21
Identity = 66/185 (35.68%), Postives = 100/185 (54.05%), Query Frame = 3
Query:  486 TKIITSGVICGIGDIMAQALMFTQASGAVTLGKFVRSVELQRFSIYTFLGAFWIAPFVHYWFDTLESITKSPEGPPRTFVGRMGKALKMVTLDQSIGAPLVNAGMMFLFSLMTAFLAD--GIGMRAGKAAGVMVKDKLWGTMLTCWKVWPAANLINFAFVPAPLRVLFMNVVGLGWNIYLAGAVN 1034
            T++ TSGVI  +GD + Q L+  +A    +L       +++RF ++ F+GAF+    +H WF  L++   S   P +       K++ M+ +DQ+ GA  VNAG M LF L+ A        G     A   M+K+ +   +L  +K+WPAAN +NF  VP  LR+LF NVV L +N  L+  VN
Sbjct:  116 TRMTTSGVISALGDFLCQYLVAVKAGNPFSL-------DVRRFLVFGFMGAFYFGTVIHAWFTRLDAFA-SKRFPNKE--DHFKKSVAMICIDQTCGAVSVNAGFMLLFPLVNALTLGTFSFGTSFSAAWNDMLKNMI-PVLLVNYKIWPAANFMNFLVVPLQLRLLFTNVVSLVYNALLSLIVN 289          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig330.8850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6L5_ECTSI1.030e-7952.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D6PWV8_9PHAE1.180e-6757.71PXMP2/4 family protein 2 (Fragment) n=5 Tax=Fucus ... [more]
A0A6H5K3K4_9PHAE5.970e-5838.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YM13_9STRA1.190e-3838.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YMP8_9STRA4.020e-2736.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CMN9_9STRA1.360e-2331.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A139A1W5_GONPJ4.290e-2330.93Uncharacterized protein n=1 Tax=Gonapodya prolifer... [more]
A0A2R5GQ05_9STRA7.830e-2231.43Mpv17-like protein 2 n=1 Tax=Hondaea fermentalgian... [more]
A0A388JVN7_CHABU1.640e-2132.81Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A7S3Y660_HETAK1.930e-2135.68Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig330contigH-paniculata_contig330:9837..14025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score270.4
Seed ortholog evalue1e-69
Seed eggNOG ortholog2880.D7G6L5
KEGG koko:K13347,ko:K13348
KEGG Pathwayko04146,map04146
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons3
Model size2352
Cds size900
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig330.8850.1prot_H-paniculata_contig330.8850.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig330 9974..12710 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930019.9387681-UTR-H-paniculata_contig330:9836..99731622930019.9387681-UTR-H-paniculata_contig330:9836..9973Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig330 9837..9973 +
1691481112.9563663-UTR-H-paniculata_contig330:9836..99731691481112.9563663-UTR-H-paniculata_contig330:9836..9973Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig330 9837..9973 +
1622930020.037819-UTR-H-paniculata_contig330:12710..140251622930020.037819-UTR-H-paniculata_contig330:12710..14025Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig330 12711..14025 +
1691481112.9953966-UTR-H-paniculata_contig330:12710..140251691481112.9953966-UTR-H-paniculata_contig330:12710..14025Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig330 12711..14025 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930019.997985-CDS-H-paniculata_contig330:9973..101421622930019.997985-CDS-H-paniculata_contig330:9973..10142Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig330 9974..10142 +
1691481112.9684536-CDS-H-paniculata_contig330:9973..101421691481112.9684536-CDS-H-paniculata_contig330:9973..10142Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig330 9974..10142 +
1622930020.0097857-CDS-H-paniculata_contig330:10867..113571622930020.0097857-CDS-H-paniculata_contig330:10867..11357Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig330 10868..11357 +
1691481112.9772751-CDS-H-paniculata_contig330:10867..113571691481112.9772751-CDS-H-paniculata_contig330:10867..11357Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig330 10868..11357 +
1622930020.0250008-CDS-H-paniculata_contig330:12469..127101622930020.0250008-CDS-H-paniculata_contig330:12469..12710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig330 12470..12710 +
1691481112.9863172-CDS-H-paniculata_contig330:12469..127101691481112.9863172-CDS-H-paniculata_contig330:12469..12710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig330 12470..12710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig330.8850.1

>prot_H-paniculata_contig330.8850.1 ID=prot_H-paniculata_contig330.8850.1|Name=mRNA_H-paniculata_contig330.8850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=300bp
MLVKQTMQSLVLGLGIWHASGFVSVGARSTHKLPQAAGVGGDRLTMALPQ
AKQQCLGLLHRARGGQLFQRRQAVAIPEVEVKPQETRFVAPSHPAEPEKK
GLFNAYLRALDKKPMRTKIITSGVICGIGDIMAQALMFTQASGAVTLGKF
VRSVELQRFSIYTFLGAFWIAPFVHYWFDTLESITKSPEGPPRTFVGRMG
KALKMVTLDQSIGAPLVNAGMMFLFSLMTAFLADGIGMRAGKAAGVMVKD
KLWGTMLTCWKVWPAANLINFAFVPAPLRVLFMNVVGLGWNIYLAGAVN*
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mRNA from alignment at H-paniculata_contig330:9837..14025+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig330.8850.1 ID=mRNA_H-paniculata_contig330.8850.1|Name=mRNA_H-paniculata_contig330.8850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4189bp|location=Sequence derived from alignment at H-paniculata_contig330:9837..14025+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGTTTGCAACTCACGTGCGCGGCACTTGTCTTTCAAAGGACCCAGCAC TCTGGCACTTTTTTTACGAGCTACAGAGAAGACACCGTTTCTGATAGTTA ACCAGGCAACAGTGACGGCGACGCAAACACTACAACCATGCTGGTGAAAC AAACGATGCAATCCCTGGTGCTAGGGCTGGGAATTTGGCACGCGTCGGGT TTTGTGAGTGTCGGGGCGAGATCAACCCATAAATTACCTCAGGCAGCCGG CGTAGGAGGCGACCGATTAACTATGGCTTTGCCACAGGCGAAGCAACAAT GTTTGGGTGAGTACAGCCGTGTATGCGAGTGTGGGTGTTGCGCAGGCGAG GGTGAAGGCGTGGCGTCAACGTGGAGTTGCAGCATGGTAGCAAAGTAGTC ACTGTCAACGTCTCTGTTCAGAGCGCTGAAATCTCAGCCAAAGTCGGCAG GGCTGTGGCACTGATGATGCTGTCCAGCATAGGCTGACCGCACCAACGAT ACATTTGCAGTCCCTGTCGTTGTCTTCGTGACACACTTTAAAGGCGTCTG GAGCAGTAGGAGTATGTCATCGACCCGGCCACACCTCGCTCCTGATCTAT CCCCTTTTCACTAGTACACCAATTCTTGTGAGATGGAACTCTCTGCTTGC TTGCTGCGCAAGCGAAAAATTGTTTGTTTACCACGCACACGCTGTCCGTG ACTCAAGTGTAGCAACCATTGTTGGTCCACCCTGCTCCTTGAGTACGTAC CCTCGCCTTTTATCCCAGATGCGAGTTTTCCCTTTTGCGGAATAATCAAT GATCTATATATTATTGTGATTATGCCATCACTCACACGTCAATCTCGAGC CTCACGCGGCTGTGATATGGTCTCTAATTTTTGCGCTACACACGCCGTTG TCTCTCGGCTCCACCATCGTCGGTAGAGGATGGCAGGATTGCAGCACTAT ACATGTCGTGTTGTCCTCTACCGGCGCCACGCCAACAACCCCATACTCAA TGCTCGCTGAAAAAAACTCTCGAAAACACAGGTTTGCTGCACCGCGCGCG AGGCGGGCAGCTTTTCCAGCGACGACAAGCAGTGGCGATCCCCGAGGTTG AAGTGAAGCCACAGGAAACGCGCTTCGTCGCGCCGTCACACCCCGCAGAG CCCGAGAAGAAGGGCCTCTTCAACGCCTACCTCCGAGCCCTTGACAAGAA GCCCATGCGGACAAAGATCATCACGTCGGGGGTCATATGCGGCATCGGCG ACATTATGGCGCAGGCCTTGATGTTTACTCAAGCTAGCGGCGCTGTGACA CTAGGCAAATTCGTCCGCAGCGTGGAGCTGCAGCGATTCTCAATCTATAC CTTTCTTGGTGCATTCTGGATTGCGCCGTTCGTGCACTACTGGTTCGACA CCCTCGAGTCCATTACCAAGTCTCCCGAGGGCCCGCCCCGGACTTTTGTC GGCCGCATGGGCAAGGCGTTAAAGATGGTCACGTTGGACCAGAGCATCGG AGCGCCGCTGGTCAACGCTGGGTGAGTTTACTGGTTCCTGACGCCGTGCT TTTTTTTTTTTCTCGTTTTTCATTTATTTTATTTCTTGAACTTGGTGACT GAAATAGCTCAAGCGTCGTGTATTTGCCTGTGGACCTTCAACCTCTGCAT GTGTATGGCGGAAGTGTGCGGGGATCTAGGTCTGTGGTGGTGCTGCCAAA TGCAACGAGAAATGCAGATTCCTGGTAACGGACAATATCGGAACTCGACA CAAACCACCACCATTCGATTAACAAGACAAACGAAATATGCATACGTACA TCAGCAATTATTCACCCATGGTTGGTTGCACAGCATGTTCCCATGAACGA AGACCGCACCGCTCACCACCTCAGAATATGTACATCAACGTCACCGAATT AGATTTGAAAAAAACAACCAGAAATGGAGCCTCGCCTGTTGCTGGCTGTG TCTTGTTGGCCGACACTTCTTCCTACACAAGAGATGAATTCATCGGAATC ATCGAACAAAAAATGACTCCCAAGTGCAAGCAGTGTGCACTGAAGCGATA ATGCGAGAGCACAGTGGCGATGGGTTCGGTTATAACATGACTCGAATCCT AGTCCGTCCAAAGTTTAATCCAGTAGTAGGCTTGGGCTGAGAGGTCAAGG TTGAAGTCACGTTCCTTCCGGCCGTTTCTACTCGTTATGTTCACTGGCTC CTTGTTTCGCCTGTAAGGTGTTTGATATGCTTTTTCTCTTTTGAAACCCG GATATTTCTCCCTTCGTTCCATGTCTTGTCGCTCTATAGGCTAAGTAAAC AGGAATAATGACGATAAATTAAAAACGCCAAACCTTCATTTCAAATATGC TGCCCCTTCATATGTCATGACGTGTCATGCATGCGCGTCTGGCACAGATC GTTTCTCCCTATTGATTTAATTTTGCTATCAAGTGGATACAGCATGTCGC CCACCTTCCCACCTTTTTTTCTTTTTTTTATTCCCGATTTTTTCCGTGAT TTGCTTCTGCCTTGTTGTCATGTTGGCCTCTCTTTTGTTTCTCTCCCTCG TGTTACTGACCCTTGCCTGTTTTTTCGTGCTCTTCCTCCAATTCTTATTC TTGCTTCCCCTCTTGGATCAACCAAAACCACAGGATGATGTTTCTGTTCT CGCTGATGACTGCCTTTCTCGCGGACGGAATCGGGATGCGAGCAGGCAAG GCGGCCGGAGTCATGGTAAAGGACAAGCTTTGGGGCACGATGCTCACGTG CTGGAAGGTGTGGCCGGCCGCCAACCTCATCAACTTTGCCTTTGTGCCCG CCCCGCTGCGAGTGTTGTTCATGAACGTTGTCGGACTGGGGTGGAACATA TACCTCGCAGGCGCCGTGAACTAATTTTCTGCGCGCGATTGATGTGATGG TGTCATTTTGATAGTTTGTGCCATTTACGGAGAAAGGGAAGAAACGTGTC GTGTAGGTGTCGCAGTTGAACATAGAACACGATCAGGCGGGTATTATGTT GAGTTGTATATTTTATATCAATAGGGCAGTTACTATCCTCGTTCATGGAG GTGTATGCACCTGGGGGAAGATGATTTTTGACACAAGAAACAGGCGAGAT AGCACTGAAAAGATGGTGGGATTTGTGGTACGTAGCCGAAAGTTGTGTTA CGATCCGCCGTGTAAGTTGTGCCTCGGGTGGTTCATTTATTTAGTTGGAT GAAGACGGCACATGTGTCCACTACCCCATTTTGTCACCTTTTCCGCGACA GTGCACGGTGTACAATGCATCTGATGTTATCTGCTCCGTGTTATGTGTTG TGGTGAGTATTTTCTGTTGTGCGAATGAAGTTAGGGCTGTTGTGTGACGA AAAGGAGTGGAGGGGGGAGGCGGGGCTGTGCATTGGTGCAGCATTCGAGC CTTAGAGCTATTATTATAAATTTCCTTAGTCCTCGAAGCTACTTTCTAAG CACACTTGCGAAGGTCCCAGTGTGTATTTAGGGGTTTCGTTGTGCATACT GTATTGTGGATCGAGCGAGATGGAGAATAGGGGAAAGAGTGATCTGTGGA AGAGGTTCGTGAAGAAGCACTACAACAGTACATGACTGAAGAATAGCCTG GTTTTGTACGGAGACATGGGGTAGTAGTAGTACGTGGTAAACTCGAAATG GTTCACTCCGCCACTAATTGTGTTTTCTCACACGAAGACTGCTTTTTTGC ACACCACCGCTTCCTTTTGCATATATTTTGGTCGTGCGCCGTTTTTTGGG GCGAATTCATGCTGTGCAGCCTCGTGTGTACTGGGTTGGTTGTATTTTGT GTAGTACGTTCATTTAGTTTTTCCTCGCGGGTCAAGTCTATTTGTGTACT CTGCCGGGAGCAGATGCTATAGAAGTGTGTAATGTTGGAAATTGATTCGA GGAATGTTGATGTAGAATAGGAAAACGTGGATTTTCCGCAGCAGCACGTG ATGCATTTGCTTTATCCACTCTGTTCCTTTTCTTTCGCCGCCACTTATAC ACCGTGCAACACGGCCAAACATGTCCAAGTATGGGAGAAATTATGAAGAG TTTTGTCTAACTGGAACGATATGTGTCCTTCTTTTAACCTAGCGAAAAAA AATGCTGCTCTTCTGCTACCTTGGACGAAGCATTGTACATATCGTCAACA ATTGCAACGAATCGATGAAGAAAAAACTGTAGTAGCCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig330:9837..14025+

>mRNA_H-paniculata_contig330.8850.1 ID=mRNA_H-paniculata_contig330.8850.1|Name=mRNA_H-paniculata_contig330.8850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1800bp|location=Sequence derived from alignment at H-paniculata_contig330:9837..14025+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGGTGAAACAAACGATGCAATCCCTGGTGCTAGGGCTGGGAATTTG
GCACGCGTCGGGTTTTGTGAGTGTCGGGGCGAGATCAACCCATAAATTAC
CTCAGGCAGCCGGCGTAGGAGGCGACCGATTAACTATGGCTTTGCCACAG
GCGAAGCAACAATGTTTGGATGCTGGTGAAACAAACGATGCAATCCCTGG
TGCTAGGGCTGGGAATTTGGCACGCGTCGGGTTTTGTGAGTGTCGGGGCG
AGATCAACCCATAAATTACCTCAGGCAGCCGGCGTAGGAGGCGACCGATT
AACTATGGCTTTGCCACAGGCGAAGCAACAATGTTTGGGTTTGCTGCACC
GCGCGCGAGGCGGGCAGCTTTTCCAGCGACGACAAGCAGTGGCGATCCCC
GAGGTTGAAGTGAAGCCACAGGAAACGCGCTTCGTCGCGCCGTCACACCC
CGCAGAGCCCGAGAAGAAGGGCCTCTTCAACGCCTACCTCCGAGCCCTTG
ACAAGAAGCCCATGCGGACAAAGATCATCACGTCGGGGGTCATATGCGGC
ATCGGCGACATTATGGCGCAGGCCTTGATGTTTACTCAAGCTAGCGGCGC
TGTGACACTAGGCAAATTCGTCCGCAGCGTGGAGCTGCAGCGATTCTCAA
TCTATACCTTTCTTGGTGCATTCTGGATTGCGCCGTTCGTGCACTACTGG
TTCGACACCCTCGAGTCCATTACCAAGTCTCCCGAGGGCCCGCCCCGGAC
TTTTGTCGGCCGCATGGGCAAGGCGTTAAAGATGGTCACGTTGGACCAGA
GCATCGGAGCGCCGCTGGTCAACGCTGGGTTTGCTGCACCGCGCGCGAGG
CGGGCAGCTTTTCCAGCGACGACAAGCAGTGGCGATCCCCGAGGTTGAAG
TGAAGCCACAGGAAACGCGCTTCGTCGCGCCGTCACACCCCGCAGAGCCC
GAGAAGAAGGGCCTCTTCAACGCCTACCTCCGAGCCCTTGACAAGAAGCC
CATGCGGACAAAGATCATCACGTCGGGGGTCATATGCGGCATCGGCGACA
TTATGGCGCAGGCCTTGATGTTTACTCAAGCTAGCGGCGCTGTGACACTA
GGCAAATTCGTCCGCAGCGTGGAGCTGCAGCGATTCTCAATCTATACCTT
TCTTGGTGCATTCTGGATTGCGCCGTTCGTGCACTACTGGTTCGACACCC
TCGAGTCCATTACCAAGTCTCCCGAGGGCCCGCCCCGGACTTTTGTCGGC
CGCATGGGCAAGGCGTTAAAGATGGTCACGTTGGACCAGAGCATCGGAGC
GCCGCTGGTCAACGCTGGGATGATGTTTCTGTTCTCGCTGATGACTGCCT
TTCTCGCGGACGGAATCGGGATGCGAGCAGGCAAGGCGGCCGGAGTCATG
GTAAAGGACAAGCTTTGGGGCACGATGCTCACGTGCTGGAAGGTGTGGCC
GGCCGCCAACCTCATCAACTTTGCCTTTGTGCCCGCCCCGCTGCGAGTGT
TGTTCATGAACGTTGTCGGACTGGGGTGGAACATATACCTCGCAGGCGCC
GTGAACTAAGATGATGTTTCTGTTCTCGCTGATGACTGCCTTTCTCGCGG
ACGGAATCGGGATGCGAGCAGGCAAGGCGGCCGGAGTCATGGTAAAGGAC
AAGCTTTGGGGCACGATGCTCACGTGCTGGAAGGTGTGGCCGGCCGCCAA
CCTCATCAACTTTGCCTTTGTGCCCGCCCCGCTGCGAGTGTTGTTCATGA
ACGTTGTCGGACTGGGGTGGAACATATACCTCGCAGGCGCCGTGAACTAA
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