mRNA_H-paniculata_contig3298.8841.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3298.8841.1
Unique NamemRNA_H-paniculata_contig3298.8841.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3298.8841.1 vs. uniprot
Match: A0A438JTI8_VITVI (NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JTI8_VITVI)

HSP 1 Score: 164 bits (415), Expect = 8.360e-51
Identity = 75/92 (81.52%), Postives = 80/92 (86.96%), Query Frame = 1 
Query:   16 LYIPTQAITIEAEQREDGSRKTTRYDIDMTKCIYCGFCQATCPVDAIVEGPNYEFATETHEELLYDKEKLLANGDRWEVAIAQNLAADHPYR 291
            L  P QAITIEAE+REDGSR+TTRYDIDMTKCIYCGFCQ  CPVDAIVEGPN+EF TETHEELLYDKEKLL NGDRWE  IA+NL A+  YR
Sbjct:   16 LICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFTTETHEELLYDKEKLLENGDRWETEIAENLRAESLYR 107
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BLAST of mRNA_H-paniculata_contig3298.8841.1 vs. uniprot
Match: UPI000C1CD8A2 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial isoform X2 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CD8A2)

HSP 1 Score: 166 bits (420), Expect = 1.940e-50
Identity = 75/97 (77.32%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:    1 YDKSYLYIPTQAITIEAEQREDGSRKTTRYDIDMTKCIYCGFCQATCPVDAIVEGPNYEFATETHEELLYDKEKLLANGDRWEVAIAQNLAADHPYR 291
            ++K     P QAITIEAE+REDGSR+TTRYDIDMTKCIYCGFCQ  CPVDAIVEGPN+EFATETHEELLYDKEKLL NGDRWE  IA+NL ++  YR
Sbjct:   94 FEKKVTICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 190
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BLAST of mRNA_H-paniculata_contig3298.8841.1 vs. uniprot
Match: UPI000B79355C (NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-A, mitochondrial-like n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B79355C)

HSP 1 Score: 163 bits (412), Expect = 3.600e-50
Identity = 74/93 (79.57%), Postives = 81/93 (87.10%), Query Frame = 1 
Query:   13 YLYIPTQAITIEAEQREDGSRKTTRYDIDMTKCIYCGFCQATCPVDAIVEGPNYEFATETHEELLYDKEKLLANGDRWEVAIAQNLAADHPYR 291
            +   P QAITIEAE+REDGSR+TTRYDIDMTKCIYCGFCQ  CPVDAIVEGPN+EFATETHEELLYDKEKLL NGDRWE  IA+NL ++  YR
Sbjct:   28 FQICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLDNGDRWETEIAENLRSESLYR 120
[Close]
BLAST of mRNA_H-paniculata_contig3298.8841.1 vs. uniprot
Match: A0A1R3KDN5_COCAP (4Fe-4S ferredoxin-type domain-containing protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3KDN5_COCAP)

HSP 1 Score: 160 bits (406), Expect = 2.030e-49
Identity = 73/89 (82.02%), Postives = 79/89 (88.76%), Query Frame = 1 
Query:   25 PTQAITIEAEQREDGSRKTTRYDIDMTKCIYCGFCQATCPVDAIVEGPNYEFATETHEELLYDKEKLLANGDRWEVAIAQNLAADHPYR 291
            P QAITIEAE+REDGSR+TTRYDIDMTKCIYCG CQ  CPVDAIVEGPN+EFATETHEELLYDKEKLL NGDRWE  IA+NL ++  YR
Sbjct:   20 PAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 108
[Close]
BLAST of mRNA_H-paniculata_contig3298.8841.1 vs. uniprot
Match: A0A371HJF1_MUCPR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-B, mitochondrial (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371HJF1_MUCPR)

HSP 1 Score: 164 bits (416), Expect = 3.460e-49
Identity = 75/92 (81.52%), Postives = 81/92 (88.04%), Query Frame = 1 
Query:   16 LYIPTQAITIEAEQREDGSRKTTRYDIDMTKCIYCGFCQATCPVDAIVEGPNYEFATETHEELLYDKEKLLANGDRWEVAIAQNLAADHPYR 291
            L  P QAITIEAE+REDGSR+TTRYDIDMTKCIYCGFCQ  CPVDAIVEGPN+EFATETHEELLYDKEKLL NGDRWE  IA+NL ++  YR
Sbjct:  149 LICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 240
[Close]
BLAST of mRNA_H-paniculata_contig3298.8841.1 vs. uniprot
Match: A0A075AEY3_9TREM (4Fe-4S ferredoxin-type domain-containing protein n=2 Tax=Eumetazoa TaxID=6072 RepID=A0A075AEY3_9TREM)

HSP 1 Score: 160 bits (406), Expect = 5.040e-49
Identity = 73/89 (82.02%), Postives = 80/89 (89.89%), Query Frame = 1 
Query:   25 PTQAITIEAEQREDGSRKTTRYDIDMTKCIYCGFCQATCPVDAIVEGPNYEFATETHEELLYDKEKLLANGDRWEVAIAQNLAADHPYR 291
            P QAITIEAE R DGSR+TTRYDIDMTKCIYCGFCQ  CPVDAIVEGPN+E++TETHEELLY+KEKLL NGDRWEV IA+NL AD+ YR
Sbjct:   49 PAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYSTETHEELLYNKEKLLQNGDRWEVEIAENLKADYLYR 137
[Close]
BLAST of mRNA_H-paniculata_contig3298.8841.1 vs. uniprot
Match: A0A565ASL5_9BRAS (4Fe-4S ferredoxin-type domain-containing protein n=11 Tax=Brassicaceae TaxID=3700 RepID=A0A565ASL5_9BRAS)

HSP 1 Score: 164 bits (415), Expect = 5.990e-49
Identity = 75/96 (78.12%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:    4 DKSYLYIPTQAITIEAEQREDGSRKTTRYDIDMTKCIYCGFCQATCPVDAIVEGPNYEFATETHEELLYDKEKLLANGDRWEVAIAQNLAADHPYR 291
            D  +   P QAITIEAE+REDGSR+TTRYDIDMTKCIYCGFCQ  CPVDAIVEGPN+EFATETHEELLYDKEKLL NGDRWE  IA+NL ++  YR
Sbjct:  152 DAYHQVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 247
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BLAST of mRNA_H-paniculata_contig3298.8841.1 vs. uniprot
Match: A0A4S8IBF3_MUSBA (4Fe-4S ferredoxin-type domain-containing protein n=3 Tax=Musa TaxID=4640 RepID=A0A4S8IBF3_MUSBA)

HSP 1 Score: 163 bits (412), Expect = 1.850e-48
Identity = 74/89 (83.15%), Postives = 80/89 (89.89%), Query Frame = 1 
Query:   25 PTQAITIEAEQREDGSRKTTRYDIDMTKCIYCGFCQATCPVDAIVEGPNYEFATETHEELLYDKEKLLANGDRWEVAIAQNLAADHPYR 291
            P QAITIEAE+REDGSR+TTRYDIDMTKCIYCGFCQ  CPVDAIVEGPN+EFATETHEELLYDKEKLL NGDRWE  IA+NL ++  YR
Sbjct:  162 PAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 250
[Close]
BLAST of mRNA_H-paniculata_contig3298.8841.1 vs. uniprot
Match: UPI000E6D6658 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial-like n=1 Tax=Hyposmocoma kahamanoa TaxID=1477025 RepID=UPI000E6D6658)

HSP 1 Score: 157 bits (398), Expect = 1.880e-48
Identity = 71/87 (81.61%), Postives = 78/87 (89.66%), Query Frame = 1 
Query:   31 QAITIEAEQREDGSRKTTRYDIDMTKCIYCGFCQATCPVDAIVEGPNYEFATETHEELLYDKEKLLANGDRWEVAIAQNLAADHPYR 291
            QAITIEAE+R DGSR+TTRYDIDMTKCIYCGFCQ  CPVDAIVEGPN+EF+TETHEELLY+KEKLL NGD+WE  IA N+ ADH YR
Sbjct:    3 QAITIEAEERHDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYNKEKLLLNGDKWESEIAANIRADHLYR 89
[Close]
BLAST of mRNA_H-paniculata_contig3298.8841.1 vs. uniprot
Match: A0A1B6QHS2_SORBI (4Fe-4S ferredoxin-type domain-containing protein n=19 Tax=Poaceae TaxID=4479 RepID=A0A1B6QHS2_SORBI)

HSP 1 Score: 163 bits (412), Expect = 1.910e-48
Identity = 74/89 (83.15%), Postives = 80/89 (89.89%), Query Frame = 1 
Query:   25 PTQAITIEAEQREDGSRKTTRYDIDMTKCIYCGFCQATCPVDAIVEGPNYEFATETHEELLYDKEKLLANGDRWEVAIAQNLAADHPYR 291
            P QAITIEAE+REDGSR+TTRYDIDMTKCIYCGFCQ  CPVDAIVEGPN+EFATETHEELLYDKEKLL NGDRWE  IA+NL ++  YR
Sbjct:  163 PAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 251
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3298.8841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438JTI8_VITVI8.360e-5181.52NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
UPI000C1CD8A21.940e-5077.32NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
UPI000B79355C3.600e-5079.57NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A1R3KDN5_COCAP2.030e-4982.024Fe-4S ferredoxin-type domain-containing protein n... [more]
A0A371HJF1_MUCPR3.460e-4981.52NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A075AEY3_9TREM5.040e-4982.024Fe-4S ferredoxin-type domain-containing protein n... [more]
A0A565ASL5_9BRAS5.990e-4978.134Fe-4S ferredoxin-type domain-containing protein n... [more]
A0A4S8IBF3_MUSBA1.850e-4883.154Fe-4S ferredoxin-type domain-containing protein n... [more]
UPI000E6D66581.880e-4881.61NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A1B6QHS2_SORBI1.910e-4883.154Fe-4S ferredoxin-type domain-containing protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3298contigH-paniculata_contig3298:17227..18222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score163.3
Seed ortholog evalue5.7e-38
Seed eggNOG ortholog4558.Sb01g006640.1
KEGG rclassRC00061
KEGG koko:K03941
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0016020,GO:0019866,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0046872,GO:0070469,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1902494,GO:1990204
EggNOG free text desc.4Fe-4S dicluster domain
EggNOG OGs37KYT@33090,3GDJE@35493,3IEF3@38820,3KM57@4447,COG1143@1,KOG3256@2759
EC1.6.5.3,1.6.99.3
COG Functional cat.C
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930017.3058665-CDS-H-paniculata_contig3298:17226..173841622930017.3058665-CDS-H-paniculata_contig3298:17226..17384Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3298 17227..17384 -
1691481111.5846956-CDS-H-paniculata_contig3298:17226..173841691481111.5846956-CDS-H-paniculata_contig3298:17226..17384Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3298 17227..17384 -
1622930017.3232195-CDS-H-paniculata_contig3298:18086..182221622930017.3232195-CDS-H-paniculata_contig3298:18086..18222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3298 18087..18222 -
1691481111.5984323-CDS-H-paniculata_contig3298:18086..182221691481111.5984323-CDS-H-paniculata_contig3298:18086..18222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3298 18087..18222 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3298.8841.1prot_H-paniculata_contig3298.8841.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3298 17227..18222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3298.8841.1

>prot_H-paniculata_contig3298.8841.1 ID=prot_H-paniculata_contig3298.8841.1|Name=mRNA_H-paniculata_contig3298.8841.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
YDKSYLYIPTQAITIEAEQREDGSRKTTRYDIDMTKCIYCGFCQATCPVD
AIVEGPNYEFATETHEELLYDKEKLLANGDRWEVAIAQNLAADHPYR*
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mRNA from alignment at H-paniculata_contig3298:17227..18222-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3298.8841.1 ID=mRNA_H-paniculata_contig3298.8841.1|Name=mRNA_H-paniculata_contig3298.8841.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=996bp|location=Sequence derived from alignment at H-paniculata_contig3298:17227..18222- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGACAAATCCTATCTCTATATACCTACGCAGGCAATTACGATTGAAGC
TGAGCAGCGAGAAGACGGCAGCCGGAAAACGACACGCTACGACATCGACA
TGACTAAGTGCATCTACTGCGGCTTCTGCCAGGCAAGTTTGTTTTTAAGG
GCGATCCAACGGAGAAGCGATGGGATCAGCCCCATCCCGTCCTACTGAAA
TATCAAAATCTTGCTTTTTTCCCCCATGTTTGTTTCTCATGAGAGTGTCC
CATTTAGTTCCGTAGGCCATGGAACCCATTTAATCATTGACTTAAGGTTA
CGTCCGGTCGATATTTCAACCCCCACTCTCCTTGTCCCGTCTCGTGCCAC
ACTCGACTATGCCAATCCTGTGCCGTCCCGTGTTTCCTTGAAAAACTCCG
TTTTTTTTTTTTTCCCACGGTTTACAACCGGAACCACAATGTCAACACAG
TGCAGTCCTTGTATCTGTTTGGACACTAATTTCTGTACTGTGCATTACAT
GCAGTGGGTTCTTTGCAATAACGTCTCTAGTGTCGGTCCGGATGGTGGAG
AAAAACCTTTGATTCAGTCAAGATTGCCAATCTCAATATATATATATATA
TATATATATATACATATATAGGGAAAATTATGAAGCCATCAGCTGAGCAT
ATTATATATTGTTTTCTTAAAAAAGTTTTCCCTAGGGTCAAAATGATTAA
TTTGTAGTCAAGTCCTTTTTGTCATCGACCGATGGAGCTGGTGCTGTATT
GATAATGCACTTACCAGCGATGTTATAAAACCATGCGAGGTGAGGTGGCT
AACGCGCTTTCGTGGGACGACCGGACACTCGCAGGAAGCATGCCCGGTGG
ATGCTATCGTGGAGGGCCCTAACTACGAATTTGCCACCGAAACCCACGAG
GAACTGCTATATGACAAGGAAAAACTGTTGGCTAACGGCGATCGGTGGGA
GGTAGCGATCGCTCAGAACCTCGCTGCGGACCACCCCTACCGCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3298:17227..18222-

>mRNA_H-paniculata_contig3298.8841.1 ID=mRNA_H-paniculata_contig3298.8841.1|Name=mRNA_H-paniculata_contig3298.8841.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig3298:17227..18222- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGACAAATCCTATCTCTATATACCTACGCAGGCAATTACGATTGAAGC
TGAGCAGCGAGAAGACGGCAGCCGGAAAACGACACGCTACGACATCGACA
TGACTAAGTGCATCTACTGCGGCTTCTGCCAGGCAATATGACAAATCCTA
TCTCTATATACCTACGCAGGCAATTACGATTGAAGCTGAGCAGCGAGAAG
ACGGCAGCCGGAAAACGACACGCTACGACATCGACATGACTAAGTGCATC
TACTGCGGCTTCTGCCAGGCAACATGCCCGGTGGATGCTATCGTGGAGGG
CCCTAACTACGAATTTGCCACCGAAACCCACGAGGAACTGCTATATGACA
AGGAAAAACTGTTGGCTAACGGCGATCGGTGGGAGGTAGCGATCGCTCAG
AACCTCGCTGCGGACCACCCCTACCGCTAGCATGCCCGGTGGATGCTATC
GTGGAGGGCCCTAACTACGAATTTGCCACCGAAACCCACGAGGAACTGCT
ATATGACAAGGAAAAACTGTTGGCTAACGGCGATCGGTGGGAGGTAGCGA
TCGCTCAGAACCTCGCTGCGGACCACCCCTACCGCTAG
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