mRNA_H-paniculata_contig3298.8840.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3298.8840.1 vs. uniprot
Match: A0A6H5JG49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG49_9PHAE) HSP 1 Score: 619 bits (1595), Expect = 1.110e-188 Identity = 642/1684 (38.12%), Postives = 803/1684 (47.68%), Query Frame = 1
Query: 1 QAVRTPNSAGIHWQKAGLRTGESQDNLRGLLKKAGNKHAVAEFDVLDRRLEDVQENLKAVRLALVHDVRAVRVSGWGEESQEFRFS-RGGGCNVASVDVRLRPPCGDTLEECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQDGQRKENVERGREGXXXXXXXXXXXXXXXXXXXNDGYSLAIGSIG-RTKTGGSGGQRSXXXXSGEAATSSLDEIKRQMGKNPLDLVRSRNALEEEMLLGASAENLGGRSSTSSRRTGSGAAAATRGGRAADSVALSERGDFMDNYNRSGASFLSAADGGQDVDVGSTEGDRRLDDGAETAV------------DWKDGLMGMPPHERAELYEEKGMYREALRWHRQDLSAARKRMRDGEEEDDRPAASDFARALRNTGRCLGKLDMEGFAEAKAYLSKARELVGPDGPSPSPAEEQDVVLELGTLWYTRHVLCGSEGLRFIADEALEEAVRYYRECRELCVDLLADLEE-----REGDTFDPSDEASKTAIDESRSTLLRAEFNLGMALVEKKAQADALPHLLAVQQRFRELSTVSASASVRSA------AGXXXXXXXXXXXXXXTTEAEGEKTTRGGEIQAGEATSDLTGLYASSLVLLAECYATPTAPMSA--------RLSAAVKALETAAHTFLDIGDPGAALEALQRLVKILRLL---GYSRGSGERK-------VSRVEVLCDRASLALPPLPPQSLSWTRGRWGEDSRGDEGEDD---LDEMEDEKHDDDEVDDTALILQRQRTDQSSDARRSVVNQVEVPAEKRNSGN----------SAGGTACETAGAVSPGSGKLE-NPAGTGTAGIDNGCSFLGRVGPGLSAPGFARRRRTRAT---------SSLGNPARGLDNNARGRTVTSVNGQTSSRDTLSGQVTVEVPLASEVESAAQHPSGRDVNSDSPGAAAADER-SFAQLRAAIAEAALEGGAINDSKYET-----EEGGLFSAYKDTVSSCRFLQVKPKSLVLSRLLAASRRHRPDTSSNTSDHNPAKGRSNIDGVAEECRDSSAARRNADSGGTSTLDLKSCRLSDRELQVVLHAIAKESAVPGGGGRVKHHGSLFLADNG------TSSLRLDALLLSENPGIGAGGLAALSGLGXXXXGGTAMNG--LFQSLVRLDLSRCNLKAADLIGLASPGAHGVAHDESGSGLPYTMCSLRALELNDNPFTRMGVNLGSLRGSGDGAEVQQAAAERGLAAFRNLIAQAPSLDLLDVSGCSQLPTGPSACLYSETVSAVFAAALASGLTRRF----------SNRAADASHGGYGTGNEV-----AQMSTLRLGRNTFSRSSWERVLFPLSIHPPRELHLERASSLSALPI-TADGRGESYESSTPATKITERFTADDDVDNDANDIRRIASSILRPIP--RPLSELLAATVLPADAPGVETLNLTGSTGLLLLLLSPERFTTTDEGDAAAGAVGEEREGSELRSDAPLTSVIF----RDALMSPLCRTTHLMLSGVRGRVVQMPGRQFARSAAVGRREQHIGTCQRLQFGPRDVLGFCEAASACSSLRYLDLAGSDLSGPHGAASAAAAISCLLRYSDTGQADSTVEVSDDGGGARPLMRLSLRACQLGIAGLSAVLEASLQFARDGGGDGRRCQVLAMLPRVLDLSHNR 4746
QA RTPN GIHWQKAG RTGESQD+LR LL+KAG+K EFD L+ R+ED+QE++K +R LV VRAVRV+ +GEE+QE R RGGG ++RL PPCG +L +C XXX XXXXXXXXXXXXXX G +G XXXXXXXXXX G +G R G A S + + Q+GKN L+L R R AL EE G A +GG +R+ G +RG RAA + D+ G GG D VG A DW+D L+GM PHERAE +E + M+ EAL+WHRQDL AAR + G+EE++R + D ARALRNTGRCLGKL G+AE+K L++ARELVG G PSP EEQD+VLELG L Y+R+VLC +G+RF+ADEALE A+ YYRE RELCVDL+AD E G F+ S A LLRAE+N+GM+L E++ + DA HL A + FR L A S G X T A + E S L G+YASSL LL EC A+ P SA R A + L+ +A FL IGD AL L RLV++LR G R GE + VE LCDRAS L LP + D+ GD+ ++D LD++ + A +++ R S +A G A + G + + + + AG G + + RVGP + FA+R + LGN +R + Q G + P A G ++ G AA D SFA LRAA+A A +G A + E E GG +A + C LQ KP L +RL R DT+ A TLDL +CRL+DREL+V+LH ++ GG G V ++ A +G T RL AL+L+ NPGIGAG L L G G NG LF SL+RL+LS C+L AADL G +S GA +++ + T+C L AL L DNP TR+ G + G D + A +G AA ++LIA+APSLD+LDVSGCSQ+P GP+ LYS VS + A+AL +GL R + R AD S G G AQ+STLR+G N FS SW VL LS PPREL L AS+L T DG G + ++ T + ND + LRP P + L ELLAATVLPADAPGVETLNLTGSTGLLLL +R G G VG E L + L F RDALMSPLC TTHL+LSGVRG FGPRD CEAASAC+SLR LDLAG DLSGP GAA+AAAA+SCL+ D + V + GG L RLSLRAC L AGL+AV+ A + G G R + +LP++LDLS NR
Sbjct: 23 QAERTPNVGGIHWQKAGPRTGESQDHLRRLLRKAGSKFE-GEFDALNLRIEDLQESIKRIREYLVRSVRAVRVNKFGEETQELRLRLRGGG-----GELRLPPPCGYSLADCVCGASSSPXXXVHAGSLGNAIEAARXXXXXXXXXXXXXXXXX-XXXXXXXXGFDGAAGPTTSGDXXXXXXXXXXXXXXXXXAGQLGGRAPAAG--------------ANSDDEPLDEQVGKNALELARRRAALGEE---GTGASGVGG------KRSSDGGGVVSRG-RAASRQPAEDPERAHDDDGGDGVW------GGVDGCVGXXXXXXXXXXWANXXXXXXXXXXXXXXXDWQDALLGMQPHERAEAFEGREMFAEALKWHRQDLEAARACVVSGDEEEERESVLDLARALRNTGRCLGKLGNSGYAESKKCLTEARELVGHGGLYPSPPEEQDLVLELGNLMYSRYVLCDEQGVRFLADEALEAALEYYRESRELCVDLVADSVEGYAKSSNGGVFE-SATAXXXXXXXXSGCLLRAEYNVGMSLFEQEKRGDAEAHLSAAVKIFRGLFAFGGGAQAGSTFQPAGGGGEGEXAAASVGAAAGTPAAASTLDAWKAAARKQEGLSGLGGVYASSLYLLGECLASSCVPSSALESDSRQGRRRNAAETLQASAEAFLYIGDHSGALPPLLRLVEVLRRRLAGGAGRHHGEEDEVHCRSLILGVEELCDRASSGLR-LPTEV----------DANGDDPDEDRLQLDQIRE---------GVAGLVRAARGGVSGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXEPDGRGRAHASEGQTNSLQQQQQGHAAGEGADAPPSSPAPFRRVGP-VPTSAFAQRXXXXXXXXXXXXXXRNVLGNFSRDSSXXXXXXXXXXXSRQKQKFGAAVGATCAQAPRGVGEGVIATGVGGFGGSAGGEGWAAGDGGGSFAGLRAAVA--ARDGTAAVSAAAEATARGDEVGGRDTALSKYLDKCDHLQEKPNPLACTRLAKVDHRGL-DTAL------AAXXXXXXXXXXXXXXXXXXXXXXXPPAPHQTLDLGACRLTDRELRVLLHVLS------GGRGGVGPDAAVAAATSGGGQGAPTPPPRLGALVLNGNPGIGAGALRELCG-GRGVNASRDGNGGSLFSSLLRLELSACHLTAADLEGFSSSGARPPPSEQTAAA---TVC-LEALVLRDNPLTRLRER-GPVDGVNDDDDAWIEPARKGTAALQDLIARAPSLDVLDVSGCSQIPDGPAGRLYSPQVSDLLASALRAGLEARVVAGKLAAANGAGRVADGSSGDGGNDERSESDGRAQVSTLRMGNNRFSWESWVDVLEVLSSAPPRELDLSFASALPGRSAATGDGVGTATAAAVALTPVG----------GGNNDSPGAVTPPLRPAPPAQTLGELLAATVLPADAPGVETLNLTGSTGLLLL---DDRRRQQRRG--VEGGVGIEDPSEPLACLSSLGMEAFVLLLRDALMSPLCETTHLLLSGVRGPXXXXXXXXXXXXXXXXXXXXXXXXXXAAVFGPRDAKSLCEAASACASLRCLDLAGCDLSGPVGAAAAAAAVSCLISNDD----EDEVGLGMAGG---VLRRLSLRACGLEAAGLAAVVRALVAEPEGGLEPGTRRKG-RVLPKLLDLSDNR 1603
BLAST of mRNA_H-paniculata_contig3298.8840.1 vs. uniprot
Match: D8LDQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDQ0_ECTSI) HSP 1 Score: 585 bits (1507), Expect = 7.760e-177 Identity = 637/1664 (38.28%), Postives = 778/1664 (46.75%), Query Frame = 1
Query: 1 QAVRTPNSAGIHWQKAGLRTGESQDNLRGLLKKAGNKHAVAEFDVLDRRLEDVQENLKAVRLALVHDVRAVRVSGWGEESQEFRFS-RGGGCNVASVDVRLRPPCGDTLEECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQDGQRKENVERGREGXXXXXXXXXXXXXXXXXXXNDGYSLAIGSIGRTKTGGSGGQRSXXXXSGEAATSSLDEIKRQMGKNPLDLVRSRNALEEEMLLGASAENLGGRSSTSSRRTGSGAAAATRGGRAADSVALSERGDFMDNYNRSGASFLSAADGGQDVD--------VGSTEGDRRLDDGAETAVDWKDGLMGMPPHERAELYEEKGMYREALRWHRQDLSAARKRMRDGEEEDDRPAASDFARALRNTGRCLGKLDMEGFAEAKAYLSKARELVGPDGPSPSPAEEQDVVLELGTLWYTRHVLCGSEGLRFIADEALEEAVRYYRECRELCVDLLADLEEREGDTFDPSDEASKTAIDE--------SRSTLLRAEFNLGMALVEKKAQADALPHLLAVQQRFRELSTVSASASVRS-----AAGXXXXXXXXXXXXXXTTEAEGEKTTRGGEIQAGEATSDLTGLYASSLVLLAECYATPTAPMSA--------RLSAAVKALETAAHTFLDIGDPGAALEALQRLVKILRLL---GYSRGSGERKVSRVEVLCDRASLALPPLPPQSLSWTRGRWGEDSRGDEGEDDLDEMEDEKHDDDEVDDTALILQRQRTDQSSDARRSVVNQVEVPAEKRNSGNSAGGTACETAGAVSPGSGKLENPAGTGTAGIDNGCSFLGRVGPGLSAPGFARRRRTRATSS---------LGN-PARGLDNNARGRTVTSVNGQTSSRDTLSGQVTVEVPLASEVESAAQHPSGRDVNSDSPG-AAAADERSFAQLRAAIA--------EAALEGGAINDSKYETEEGGLFSAYKDTVSSCRFLQVKPKSLVLSRLLAASRRHRPDTSSNTSDHNPAKGRSNIDGVAEECRDSSAARRNADSGGTSTLDLKSCRLSDRELQVVLHAIAKESAVPGGGGRVKHHGSLFLADNGTSSLRLDALLLSENPGIGAGGLAALSGLGXXXXGGTAMNG--------LFQSLVRLDLSRCNLKAADLIGLASPGAHGVAHDESGSGLPYTMCSLRALELNDNPFTRMGVNLGSLRGSGDGAEVQQAAAERGLAAFRNLIAQAPSLDLLDVSGCSQLPTGPSACLYSETVSAVFAAALASGLTRRF----------SNRAADASHGGYGTGNEV-----AQMSTLRLGRNTFSRSSWERVLFPLSIHPPRELHLERASSLSALPI-TADGRGESYESSTPATKITERFTADDDVDNDANDIRRIASSILRPIPRP------LSELLAATVLPADAPGVETLNLTGSTGLLLLLLSPERFTTTDEGDAAAGAVGEEREGSELRSDAPLTSVIFRDALMSPLCRTTHLMLSGVRGRVVQMPGRQFARSAAVGRREQHIGTCQRLQFGPRDVLGFCEAASACSSLRYLDLAGSDLSGPHGAASAAAAISCLLRYSDTGQADSTVEVSDDGGGARPLMRLSLRACQLGIAGLSAVLEASLQFARDGGGDGRRCQVLAMLPRVLDLSHNR 4746
QA RTPN GIHWQKAGLRTGESQD+LR LL KAG+K +FD L+ R+ED+QE++K +R LV VRA RV+ +GEE+QE R RGGG ++RL PPCG +L +C XXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXX XX S + +DEIK Q GKN L L R R ALEEE GA +GG +R+ G +RG A+ A DW+D L+GM PHERAE +E + M+ EALRWHRQDL AAR + G+EE++R + D ARALRNTGRCLGKL G+AE+K L++ARELVG GP PSP EEQD+VLELG L Y+R+VLC +G+RF+ADEALE A+ YYRE RELCVD++AD + G + S++A + LLRAE+N+GM+L E++ + DA HL A + FR L A S A GXXXXXXXXXXXXXX + E S L G+YASSL LL EC A+ P SA R A + L +A FL GD AL L LV++LR G R GE D P RGR + EG RT+ +++ G++AG E AGA SP S PA RVGP + FA+RR LG P D +A VT+V+ + T G + P A G ++ G SFA LRAA A AA EG A D E GG +A + C LQ KP L +RL A R DT+ A V C + R + LDL +CRL+DREL+V+LH +++ G V S RL AL+L+ NPGIGAG L L G GXXXX MN LF SL+RL+LS C L AADL G +S GA + D++ + T+C LRAL L DNP TR+ G + G + + A +G A ++LIA+APSL++LDVSGCSQ+P GP LYS VS + A+AL++GL R + R AD S G G AQ+STLR+G N FSR SW VL LS +PPREL L AS L TADG + T + P PRP L ELLAATVLPADAPGVETLNLTGSTGLLL S ++ RD LMSPLC TTHL+LSGVRG FGPRD CEAASAC+SLR LDLAG DLSGP GAA+AAAA+SCL+ D + V + GG R RLSLRAC LG AGL+ V+ A + G G G R + + LP++LDLS NR
Sbjct: 23 QAERTPNVGGIHWQKAGLRTGESQDHLRRLLGKAGSKFE-GDFDALNLRIEDLQESIKRIREYLVRSVRAFRVNKFGEETQELRLRLRGGG-----GELRLPPPCGYSLADCVCGASSSPPPPVHAGSLGDAIEAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASANSDDVPVDEIKSQTGKNALGLARRRAALEEETKTGA--RGVGG------KRSSDGXXVVSRGRAASREPAEDPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWANXXXXXXXXXXXXXXXXDWQDALLGMQPHERAEAFEGREMFAEALRWHRQDLEAARACVVSGDEEEERGSVLDLARALRNTGRCLGKLGNSGYAESKKCLTEARELVGHGGPYPSPPEEQDLVLELGNLMYSRYVLCDEQGVRFLADEALEAALEYYRESRELCVDVVADSVDA-GFAKTSNGGVSESAXXXXXXXXXXTASGCLLRAEYNVGMSLFEQEKRRDAEGHLSAAVKIFRRLFAAGGGAQAGSTFHPAAGGXXXXXXXXXXXXXXXXXXXSTLDAWKAAARKQEGLSGLGGVYASSLYLLGECLASSCVPSSALEDDSRQGREKIAAETLRASAEAFLYTGDHSRALPPLLMLVEVLRRRLAGGAGRHHGEE---------DERKGGEPD--------GRGR----AHAPEG---------------------------RTNSP---------------QQQQQGHAAG----EVAGA-SPSS-----PA------------PFRRVGP-VPTSAFAQRRXXXXXXXXXXXXXRKVLGKFPG---DRSATSSAVTTVSSSRQTSGTAVGAAGAQAPRGVGEGVVATGGGGFGGSAGXXGWVXXXXXGSFAGLRAAAAAQDESTAVSAAAEGRARGD-----EVGGRDTALSKYLEKCHHLQEKPNPLACARLAQAEHRGL-DTAP------AAXXXXXXXXVDPACDGDNTHRHRSPPAPHQALDLGACRLTDRELRVLLHVLSRGRGGVGPDAAVXXXXXXXXXXXPMPSPRLGALVLNGNPGIGAGALRELCG-GXXXXXXXXMNASRNGSGGSLFSSLLRLELSACRLTAADLEGFSSNGAGPPSFDQTAAA---TVC-LRALVLRDNPLTRLRER-GPVDGGNEDEDAWIEPARKGTVALQHLIARAPSLEVLDVSGCSQIPDGPVRRLYSPQVSDLLASALSAGLEARVVAGKLAAATGAGRVADGSGGDGGNDERSESDGRAQVSTLRMGNNRFSRESWGDVLEVLSSNPPRELDLSFASVLPGRSAATADG-------------VVTTATXXXXXXXXXXXXXXXXXGAVTPPPRPAPPAQTLGELLAATVLPADAPGVETLNLTGSTGLLLXXXXXXXXXXXXXXXXXXXXXXAPL-ACPSSSGMEAFLLLLRDTLMSPLCETTHLLLSGVRGPXXXXXXXXXXXXXXXXXXXXXXXXXXAAVFGPRDAKSLCEAASACASLRCLDLAGCDLSGPVGAAAAAAAVSCLISNHD----EDEVGLGMAGGRLR---RLSLRACALGAAGLAVVVRALVAEPGGGSGPGTRRKGRS-LPKLLDLSDNR 1542 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3298.8840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3298.8840.1 >prot_H-paniculata_contig3298.8840.1 ID=prot_H-paniculata_contig3298.8840.1|Name=mRNA_H-paniculata_contig3298.8840.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1637bp QAVRTPNSAGIHWQKAGLRTGESQDNLRGLLKKAGNKHAVAEFDVLDRRLback to top mRNA from alignment at H-paniculata_contig3298:1199..13071+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3298.8840.1 ID=mRNA_H-paniculata_contig3298.8840.1|Name=mRNA_H-paniculata_contig3298.8840.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11873bp|location=Sequence derived from alignment at H-paniculata_contig3298:1199..13071+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3298:1199..13071+ >mRNA_H-paniculata_contig3298.8840.1 ID=mRNA_H-paniculata_contig3298.8840.1|Name=mRNA_H-paniculata_contig3298.8840.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=9822bp|location=Sequence derived from alignment at H-paniculata_contig3298:1199..13071+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |