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Homology
BLAST of mRNA_H-paniculata_contig32967.8838.1 vs. uniprot
Match: D7FU50_ECTSI (CBF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU50_ECTSI) HSP 1 Score: 170 bits (431), Expect = 5.050e-45 Identity = 145/264 (54.92%), Postives = 175/264 (66.29%), Query Frame = 1
Query: 1 QGPALRTLMQFVELEPSLCVSTAPKVVQSA-----IVRGAGGGXXAGEGTVWGGLFFEVMRALALGPCSMQPKVLKALGEDYVNVHDDVRYYLLGNITAMAKRAFSDSDKRDSKTAISAGVDTPKKPSP--LPADSPLRGFPGVDAAF---------------------GNIQERGDVSTVTPDARQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ETMTLENIGGRLAQLLMVVRMVEEQSDLTAFLVPVELSLPA 702
QGPALRTLMQFVE+EP LCVS A K+ ++ ++ G GG G GT+WGGLF E+MR + LGPCSM+PK+LK+LGED+VNVHDD+RY+LL ++T++A+ A +D K + A S + PS LP +SPLRGF G AAF G + S V XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + M L I GRLA++LMVVRMVEEQSDLTAFL+PV LSLP+
Sbjct: 156 QGPALRTLMQFVEIEPILCVSAA-KLSRAGRRGGGLLGGDGGLASPGAGTIWGGLFAELMRTIVLGPCSMEPKLLKSLGEDFVNVHDDIRYFLLASVTSIARHALADDTKLQEQRA-SPSPSSXXXPSRFVLPENSPLRGFRGTAAAFADARGGAGGGGETVGSAGKGSGGCETAAGASAVDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGQKMDLAEISGRLARVLMVVRMVEEQSDLTAFLLPVRLSLPS 417
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 155.2 |
| Seed ortholog evalue | 3.6e-35 |
| Seed eggNOG ortholog | 2880.D7FU50 |
| Preferred name | NOC4L |
| KEGG ko | ko:K12767,ko:K14771 |
| KEGG Pathway | ko04113,ko04138,ko04213,map04113,map04138,map04213 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0000981,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0030688,GO:0030689,GO:0030692,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140110,GO:1901360,GO:1903506,GO:1990904,GO:2000112,GO:2001141 |
| EggNOG free text desc. | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| EggNOG OGs | KOG2154@1,KOG2154@2759 |
| EC | 2.7.11.1 |
| COG Functional cat. | U |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko01001,ko03009 |
| Exons | 3 |
| Model size | 702 |
| Cds size | 678 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig32967.8838.1 >prot_H-paniculata_contig32967.8838.1 ID=prot_H-paniculata_contig32967.8838.1|Name=mRNA_H-paniculata_contig32967.8838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=226bp
MQFVELEPSLCVSTAPKVVQSAIVRGAGGGGGAGEGTVWGGLFFEVMRAL
ALGPCSMQPKVLKALGEDYVNVHDDVRYYLLGNITAMAKRAFSDSDKRDS
KTAISAGVDTPKKPSPLPADSPLRGFPGVDAAFGNIQERGDVSTVTPDAR
QEQEADAASNSKKKRKNKKKNKNMDAAGFGDGGGGETMTLENIGGRLAQL
LMVVRMVEEQSDLTAFLVPVELSLPA back to topmRNA from alignment at H-paniculata_contig32967:15..1694- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig32967.8838.1 ID=mRNA_H-paniculata_contig32967.8838.1|Name=mRNA_H-paniculata_contig32967.8838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1680bp|location=Sequence derived from alignment at H-paniculata_contig32967:15..1694- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGCCCTGCTCTCCGCACATTAATGCAATTTGTAGAGCTGGAGCCTAG
CCTGTGCGTGTCTACCGCGCCAAAAGTTGTGCAGTCCGCGATAGTCAGGG
GAGCGGGTGGTGGAGGAGGCGCCGGGGAGGGGACTGTTTGGGGAGGGCTG
TTTTTTGAGGTGATGCGTGCGCTGGCTTTGGGGCCGTGCTCGATGCAGCC
AAAGGTGCTGAAAGCCCTGGGAGAGGACTACGTCAACGTGCACGATGACG
TCAGGTGTGTGTTGCCTATCTCTCCCCCCCTCCATCCTCTGCGTGCGTGT
GAGGGGGAGTGTGTGTTCTTCAGTGTGAGTTGATTTTGTGTGCGTTCAGC
CATGCTGTATTTCTGTATGTGTATGTTGGTCTCTTTTGTCCTTTGTGTGC
ATTGTTCTCTTGGTGTATTTATTGGTCTCTGTCTCTGTCTCTGTCTCTCC
CTGTCTCTGTCTCTATCTCTCTCTGTCTCTATCTCTCTCTGTCTCTGTCT
CTCTCTGTCGCTGTCTCTCTCTGTCTCTGTCTCTCTCTGCCTCTCTCTGT
CTCTGTCTCTGTCTCTCTCTGTCTCTGTCTCTCTCTGTCGCTGTCTCTCT
CTGTCTCTGTCTCTCTCTGTCTCTGCCTCTCTCTGCCTCTCTCTGCCTCT
GCCTCTCTCTGTCTCTCTCTGTCTCTGCCTCTGTCTCTCTCTGTCTCTGT
CTCTCTCTGCCTCTCTCTGTCTCTCTCTGTCTCTGTCTCTCTCAACTCTC
CCCCCCCCTCTTGTGATCAACGGTACAGCGAACATCATACCCCTTTTGAA
GATAATTTTACTGCGAATTATTCACACCCATGATTTGAGGTTGAAGCTCC
CGCCCCTGCTCATCTCCGCAATATTCCTCACCGCACGCAGATACTACCTT
CTCGGAAACATCACGGCCATGGCGAAGCGTGCCTTCTCCGACAGCGACAA
ACGGGACAGCAAGACCGCAATCAGCGCAGGCGTCGACACCCCGAAGAAAC
CCTCTCCCCTCCCCGCTGACTCCCCGTTGCGGGGTTTCCCTGGGGTCGAC
GCGGCGTTCGGCAATATTCAGGAAAGGGGGGATGTGTCGACCGTTACCCC
GGATGCACGACAAGAACAGGAGGCCGACGCAGCAAGCAATTCGAAGAAGA
AACGGAAGAACAAAAAGAAGAACAAAAATATGGACGCTGCAGGATTTGGC
GATGGTGGTGGTGGTGGTGGTGGTGGCGATGGTGGTGGTGAAAAACATAA
CAATCCAAAAGTTGGGGGCGCTAGTAGTAGCGGCAGTAGTAATGGCAGCC
AAACGGTAAGGATCACGGGCGGAGGGCACAAGAATGGATCTATCTCGGGA
GATCACCCGGGAGACAGTAACGGGATGAACAGGACGGTGGTAGGGCCTGT
TGCTGGGAAGTCTACGTCATTTTCCACTAGCAGTAGCAGCGGCGGCGGCG
GCGGCGGCGGCGGCGGCGGGGGCGGGGGCGACGACAGCTGCAGCAATGGA
AACAAATCGCAGCACACGGATCGAAGCAGCGCAAGCGACACTGGGGGGAG
GGAGGGAGAAACAATGACCCTCGAGAACATCGGTGGGCGGTTAGCGCAGC
TTCTGATGGTTGTTAGAATGGTCGAGGAGCAGTCTGACCTGACCGCTTTT
CTTGTGCCTGTTGAGCTGTCGCTGCCTGCA back to topCoding sequence (CDS) from alignment at H-paniculata_contig32967:15..1694- >mRNA_H-paniculata_contig32967.8838.1 ID=mRNA_H-paniculata_contig32967.8838.1|Name=mRNA_H-paniculata_contig32967.8838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1356bp|location=Sequence derived from alignment at H-paniculata_contig32967:15..1694- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAATTTGTAGAGCTGGAGCCTAGCCTGTGCGTGTCTACCGCGCCAAA
AGTTGTGCAGTCCGCGATAGTCAGGGGAGCGGGTGGTGGAGGAGGCGCCG
GGGAGGGGACTGTTTGGGGAGGGCTGTTTTTTGAGGTGATGCGTGCGCTG
GCTTTGGGGCCGTGCTCGATGCAGCCAAAGGTGCTGAAAGCCCTGGGAGA
GGACTACGTCAACGTGCACGATGACGTCAGATGCAATTTGTAGAGCTGGA
GCCTAGCCTGTGCGTGTCTACCGCGCCAAAAGTTGTGCAGTCCGCGATAG
TCAGGGGAGCGGGTGGTGGAGGAGGCGCCGGGGAGGGGACTGTTTGGGGA
GGGCTGTTTTTTGAGGTGATGCGTGCGCTGGCTTTGGGGCCGTGCTCGAT
GCAGCCAAAGGTGCTGAAAGCCCTGGGAGAGGACTACGTCAACGTGCACG
ATGACGTCAGATACTACCTTCTCGGAAACATCACGGCCATGGCGAAGCGT
GCCTTCTCCGACAGCGACAAACGGGACAGCAAGACCGCAATCAGCGCAGG
CGTCGACACCCCGAAGAAACCCTCTCCCCTCCCCGCTGACTCCCCGTTGC
GGGGTTTCCCTGGGGTCGACGCGGCGTTCGGCAATATTCAGGAAAGGGGG
GATGTGTCGACCGTTACCCCGGATGCACGACAAGAACAGGAGGCCGACGC
AGCAAGCAATTCGAAGAAGAAACGGAAGAACAAAAAGAAGAACAAAAATA
TGGACGCTGCAGGATTTGGCGATGGTGGTGGTGGTGATACTACCTTCTCG
GAAACATCACGGCCATGGCGAAGCGTGCCTTCTCCGACAGCGACAAACGG
GACAGCAAGACCGCAATCAGCGCAGGCGTCGACACCCCGAAGAAACCCTC
TCCCCTCCCCGCTGACTCCCCGTTGCGGGGTTTCCCTGGGGTCGACGCGG
CGTTCGGCAATATTCAGGAAAGGGGGGATGTGTCGACCGTTACCCCGGAT
GCACGACAAGAACAGGAGGCCGACGCAGCAAGCAATTCGAAGAAGAAACG
GAAGAACAAAAAGAAGAACAAAAATATGGACGCTGCAGGATTTGGCGATG
GTGGTGGTGGTGAAACAATGACCCTCGAGAACATCGGTGGGCGGTTAGCG
CAGCTTCTGATGGTTGTTAGAATGGTCGAGGAGCAGTCTGACCTGACCGC
TTTTCTTGTGCCTGTTGAGCTGTCGCTGCCTGCAAAACAATGACCCTCGA
GAACATCGGTGGGCGGTTAGCGCAGCTTCTGATGGTTGTTAGAATGGTCG
AGGAGCAGTCTGACCTGACCGCTTTTCTTGTGCCTGTTGAGCTGTCGCTG
CCTGCA back to top
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