mRNA_H-paniculata_contig32954.8835.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32954.8835.1
Unique NamemRNA_H-paniculata_contig32954.8835.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig32954.8835.1 vs. uniprot
Match: D7FS41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS41_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.760e-33
Identity = 80/155 (51.61%), Postives = 101/155 (65.16%), Query Frame = 1 
Query:    1 TADMSVSYEELAALRREKNHLLEKGNRLQQRLNLFMMKEHRGRVD---STLGEI-----LRCEDSRILQRVDSFSILIVVATLVACFSLPAFVLIELPTTRAMMILVFMFEMFAALMLSMISSYAKQAYNYGSIRNSRTARFLHSVRWITFTGQV 441
            T D +V + EL++LRREK  L EK  RLQ+R NL +      R +   S+ GE         ED RILQRVDSFSILIVV+TL+  FS+P     +L  TR++M +VF  EMFA +  S+IS YAKQA+NYGS  N RTARF++ VRWITF+ Q 
Sbjct:   69 TNDQAVLFGELSSLRREKALLREKDLRLQERTNLLLTTTRTARGEDGGSSDGEQPSATDSEAEDDRILQRVDSFSILIVVSTLITGFSIPTIEQAQLDVTRSIMTMVFALEMFATIFFSIISFYAKQAFNYGSTNNHRTARFMYHVRWITFSSQA 223
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BLAST of mRNA_H-paniculata_contig32954.8835.1 vs. uniprot
Match: A0A6H5JK33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK33_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 6.680e-27
Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:  163 EDSRILQRVDSFSILIVVATLVACFSLPAFVLIELPTTRAMMILVFMFEMFAALMLSMISSYAKQAYNYGSIRNSRTARFLHSVRWITFTGQV 441
            ED RILQRVDSFSILIVV+TLV  FS+P+    +L  TR++M LVF  EMFA +  S+IS YAKQA+NYGS  N RTARF++ VRWITF+ Q 
Sbjct:   26 EDERILQRVDSFSILIVVSTLVTGFSIPSIEQAQLGITRSIMTLVFALEMFATIFFSIISFYAKQAFNYGSTNNHRTARFMYHVRWITFSSQA 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32954.8835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FS41_ECTSI1.760e-3351.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JK33_9PHAE6.680e-2763.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32954contigH-paniculata_contig32954:87..2128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size453
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32954.8835.1prot_H-paniculata_contig32954.8835.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32954 87..2119 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930016.452815-CDS-H-paniculata_contig32954:86..2301622930016.452815-CDS-H-paniculata_contig32954:86..230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32954 87..230 -
1691481111.1946623-CDS-H-paniculata_contig32954:86..2301691481111.1946623-CDS-H-paniculata_contig32954:86..230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32954 87..230 -
1622930016.470713-CDS-H-paniculata_contig32954:1353..15031622930016.470713-CDS-H-paniculata_contig32954:1353..1503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32954 1354..1503 -
1691481111.2036958-CDS-H-paniculata_contig32954:1353..15031691481111.2036958-CDS-H-paniculata_contig32954:1353..1503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32954 1354..1503 -
1622930016.483615-CDS-H-paniculata_contig32954:1969..21191622930016.483615-CDS-H-paniculata_contig32954:1969..2119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32954 1970..2119 -
1691481111.2149885-CDS-H-paniculata_contig32954:1969..21191691481111.2149885-CDS-H-paniculata_contig32954:1969..2119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32954 1970..2119 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930016.5006313-UTR-H-paniculata_contig32954:2119..21281622930016.5006313-UTR-H-paniculata_contig32954:2119..2128Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32954 2120..2128 -
1691481111.2253346-UTR-H-paniculata_contig32954:2119..21281691481111.2253346-UTR-H-paniculata_contig32954:2119..2128Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32954 2120..2128 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32954.8835.1

>prot_H-paniculata_contig32954.8835.1 ID=prot_H-paniculata_contig32954.8835.1|Name=mRNA_H-paniculata_contig32954.8835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
MSVSYEELAALRREKNHLLEKGNRLQQRLNLFMMKEHRGRVDSTLGEILR
CEDSRILQRVDSFSILIVVATLVACFSLPAFVLIELPTTRAMMILVFMFE
MFAALMLSMISSYAKQAYNYGSIRNSRTARFLHSVRWITFTGQVNIR*
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mRNA from alignment at H-paniculata_contig32954:87..2128-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32954.8835.1 ID=mRNA_H-paniculata_contig32954.8835.1|Name=mRNA_H-paniculata_contig32954.8835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2042bp|location=Sequence derived from alignment at H-paniculata_contig32954:87..2128- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGCCGACATGTCTGTCTCATACGAAGAGTTGGCTGCTCTGCGGCGAGA
GAAGAACCATCTACTCGAGAAGGGAAATCGATTACAGCAGCGCCTAAATC
TGTTCATGATGAAGGAGCATCGTGGGCGCGTCGACAGCACATTAGGTGAG
ATTCTTCGCGTTTCACCCTATAAGTCGACGCACTCTAACGAAGCGAACTA
CTACCTTGCGGTCGTGCATTACACAGCAAATCTAATGAGGGCGCAGGGTC
GTTGGGTCTGCCAGACTGATAGTTTTACGTAAACCCCACCATGACGCCAG
TTTCACTACCAAAACGCGCAACTGCATTGCCAGAAGAGTTCAGAGATAAC
GGTCGCCTCCTTGTTATCCGAATCCTCGATAGTTGGCATAACACGAGCTT
GGTCCATCTCGCGCCGATACCCTCCCCCCCTTCATTTTTTTTCAGTTCGT
GAATAGTAACCAAATGATCCAGCGGCTTGAAGATGCTGAGCATACCTCCG
TCTTTATTTTATGGTTATTGTCATGTTTTTTACAGTTATTTATGCATATC
TGCTTCTACTTTGGACTCCCCCCCGCCCTCTTCTCCCTTTCCCTTGTACG
TTGTTGATACTACTCCTAACCAGAGTGCGAAGACAGTCGAATTCTTCAGC
GCGTGGACTCTTTCAGCATCCTGATTGTGGTAGCTACTCTAGTTGCGTGT
TTCAGCTTGCCCGCCTTCGTGTTGATCGAGCTGCCGACAACGCGCGCAAT
GATGATCCTCGTCTTCATGTTCGAGGTACGTGAGGCCTTGCTCGTCTGAG
ATCGATCAGGTTGCGGCATGGGCGAGTTTTGGTCCATGTCCGAGCACGCG
TCTCAGCTCTTCCCGAGCTTCTGCCTGTAGCGGACGGCCTCTGTCTAGGG
TCTAATATTTTTCTTGGTACTTTGGATTGGGGGGGAGAGTTCGTGCATCC
GATCGTTAACATCTTGACACAGTACCCAGAGTATATTGTATTCGAGCGAG
TGAACACCGCGAGGCGAAGCTTGGTGGTCAAGTGTCTCTACTTTTTTATT
GAGTGATTGAAGCCGCGCAAACCCGTTTCTCCCTCGTCGCAGTCAAAATT
AGAGGGCGTCTTATATTTAACGACACCTCCTGACACCGTTCGAGAAAAAA
AAGTGGCTAATTGTGTTTTAGACACGTTCTCTGTCCGCTAGGTCGACTGT
GTTAGATAAAGTATTTGCCTCGCTAGGTGCTGCCGGTGACGCCGCTGCTG
GAATTGTTGACTGTTGTTTGCATTGCCCGTGAAGATACGCCTCGAAATAT
TCTGACCGTTGCAAGGAACGATGTTATTTTTTTATCTCGCCATAATGCAG
GTGAGCATGAACATACTTAACCGTGTGTGAATTGGGATATGATCCATTAA
CACTGTTAATAGTTGAATAAAAATCCTTCGTTGGAATCGAGATTTTGATC
GTTAGGATAAACCGGGTCAAGCGGGGACATGTTTACGGATATTGCGGGCA
GGCGTTTGGCGTTAGATGTAAATAGTTAGTCGATGACTCCCGATGAACTA
GTGACGGATGAACTAGTGATCACCCTGCGAAGTAAACTCTTCTTCTGCGC
CTCCCCCGGCCGCGAAGCGGCCTTGTTCTCTGACTGCCTACCACTAAGTT
TCTGTCGCAAGACATACTCAGCTAGAGCGTGAGGAATACCATAAATGCCA
CTTATAAGCGATCGACCTCACAAAGGTGACAACAGTATCCACAACGTTTC
GGGATGAAAATCGATCTACCTACTGAACTGCTCAGTCAAATATTTGAATG
TGATCATCGTCACGTCACAAACGCAAGGCTCCCTCTCCTTCTCCGTCTCA
TCAATGTCGCAAAATCTGTGCTGTTGCTGTCTCTTTTTCGTTGTCCAGAT
GTTCGCAGCACTAATGCTTTCCATGATATCTTCGTACGCGAAGCAGGCGT
ACAACTACGGCTCAATTCGGAACAGCCGAACGGCAAGATTTTTGCACTCC
GTTAGATGGATCACCTTCACAGGGCAGGTGAACATTCGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig32954:87..2128-

>mRNA_H-paniculata_contig32954.8835.1 ID=mRNA_H-paniculata_contig32954.8835.1|Name=mRNA_H-paniculata_contig32954.8835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig32954:87..2128- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGTCTCATACGAAGAGTTGGCTGCTCTGCGGCGAGAGAAGAACCA
TCTACTCGAGAAGGGAAATCGATTACAGCAGCGCCTAAATCTGTTCATGA
TGAAGGAGCATCGTGGGCGCGTCGACAGCACATTAGGTGAGATTCTTCGC
ATGTCTGTCTCATACGAAGAGTTGGCTGCTCTGCGGCGAGAGAAGAACCA
TCTACTCGAGAAGGGAAATCGATTACAGCAGCGCCTAAATCTGTTCATGA
TGAAGGAGCATCGTGGGCGCGTCGACAGCACATTAGGTGAGATTCTTCGC
TGCGAAGACAGTCGAATTCTTCAGCGCGTGGACTCTTTCAGCATCCTGAT
TGTGGTAGCTACTCTAGTTGCGTGTTTCAGCTTGCCCGCCTTCGTGTTGA
TCGAGCTGCCGACAACGCGCGCAATGATGATCCTCGTCTTCATGTTCGAG
TGCGAAGACAGTCGAATTCTTCAGCGCGTGGACTCTTTCAGCATCCTGAT
TGTGGTAGCTACTCTAGTTGCGTGTTTCAGCTTGCCCGCCTTCGTGTTGA
TCGAGCTGCCGACAACGCGCGCAATGATGATCCTCGTCTTCATGTTCGAG
ATGTTCGCAGCACTAATGCTTTCCATGATATCTTCGTACGCGAAGCAGGC
GTACAACTACGGCTCAATTCGGAACAGCCGAACGGCAAGATTTTTGCACT
CCGTTAGATGGATCACCTTCACAGGGCAGGTGAACATTCGGTAGATGTTC
GCAGCACTAATGCTTTCCATGATATCTTCGTACGCGAAGCAGGCGTACAA
CTACGGCTCAATTCGGAACAGCCGAACGGCAAGATTTTTGCACTCCGTTA
GATGGATCACCTTCACAGGGCAGGTGAACATTCGGTAG
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