mRNA_H-paniculata_contig32948.8833.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32948.8833.1
Unique NamemRNA_H-paniculata_contig32948.8833.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig32948.8833.1 vs. uniprot
Match: D7FN93_ECTSI (Type-4 uracil-DNA glycosylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN93_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 2.280e-53
Identity = 87/123 (70.73%), Postives = 102/123 (82.93%), Query Frame = 1
Query:   10 DVNLHQAFVQDLLAMRGDPLEEHGGRVVVYRGNPQARLMMVGEAPGAEEDMQGLPFVGRSGQLLDDILRAVGLDPEEDAYVTNIVRRRPPNNRPPTSEELDFYLPALLEEIRLVNPDIIVTLG 378
            D   H+AFV+ LL + GDPLEE GGRVVV+RG+P A LM++GEAPGAEED  G+PFVGRSGQLLDD+LRAVG DPE + YV+NIVRRRP +NR PT EE+DFYLP LLEEI LV+P +IV LG
Sbjct:  135 DAEGHRAFVEKLLTLTGDPLEEDGGRVVVFRGDPSASLMLIGEAPGAEEDRLGVPFVGRSGQLLDDMLRAVGFDPEREVYVSNIVRRRPIDNRTPTPEEMDFYLPFLLEEIGLVDPHVIVLLG 257          
BLAST of mRNA_H-paniculata_contig32948.8833.1 vs. uniprot
Match: A0A835YMS9_9STRA (Type-4 uracil-DNA glycosylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMS9_9STRA)

HSP 1 Score: 166 bits (419), Expect = 7.630e-49
Identity = 82/119 (68.91%), Postives = 93/119 (78.15%), Query Frame = 1
Query:   22 HQAFVQDLLAMRGDPLEEHGGRVVVYRGNPQARLMMVGEAPGAEEDMQGLPFVGRSGQLLDDILRAVGLDPEEDAYVTNIVRRRPPNNRPPTSEELDFYLPALLEEIRLVNPDIIVTLG 378
            H      LLA+ GDPLE  GGR+VVYRG+PQA+LM+VGEAPGA ED  G PFVGRSGQLLD IL+A G DPE D YV+NIVRRRPP NR PT+ E+ +Y P LLEEIRLVNP II+T G
Sbjct:   60 HAEMTAALLALTGDPLEPAGGRIVVYRGDPQAKLMVVGEAPGAMEDETGKPFVGRSGQLLDAILKAAGFDPETDLYVSNIVRRRPPENRDPTTAEIAYYRPWLLEEIRLVNPAIIITTG 178          
BLAST of mRNA_H-paniculata_contig32948.8833.1 vs. uniprot
Match: A0A3M1EZS2_9CHLR (Type-4 uracil-DNA glycosylase n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1EZS2_9CHLR)

HSP 1 Score: 160 bits (405), Expect = 2.680e-47
Identity = 77/119 (64.71%), Postives = 91/119 (76.47%), Query Frame = 1
Query:   22 HQAFVQDLLAMRGDPLEEHGGRVVVYRGNPQARLMMVGEAPGAEEDMQGLPFVGRSGQLLDDILRAVGLDPEEDAYVTNIVRRRPPNNRPPTSEELDFYLPALLEEIRLVNPDIIVTLG 378
            HQA V+ L  + GDPLE  GG +V+YRGNP A+LM++GE PGAEED    PFVGRSGQLLD ILRAV  DPE D Y+TN+V+RRPP NR PT EE++FY P L EEIRLV+P II+  G
Sbjct:   30 HQALVEALENLTGDPLEPWGGNMVIYRGNPAAKLMVIGEGPGAEEDRLRKPFVGRSGQLLDKILRAVHFDPETDVYITNVVKRRPPENRDPTPEEINFYAPYLFEEIRLVDPKIIMLTG 148          
BLAST of mRNA_H-paniculata_contig32948.8833.1 vs. uniprot
Match: A0A7C3BN30_9CHLR (Type-4 uracil-DNA glycosylase n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A7C3BN30_9CHLR)

HSP 1 Score: 149 bits (376), Expect = 3.680e-43
Identity = 69/119 (57.98%), Postives = 89/119 (74.79%), Query Frame = 1
Query:   22 HQAFVQDLLAMRGDPLEEHGGRVVVYRGNPQARLMMVGEAPGAEEDMQGLPFVGRSGQLLDDILRAVGLDPEEDAYVTNIVRRRPPNNRPPTSEELDFYLPALLEEIRLVNPDIIVTLG 378
            HQ  V+ L  + GDPLE+ GG +V+YRGNP A+LM++GE PGA ED    PFVGRSG+LLD IL AV  +PE+D Y++N+VRRRPP NR P  +E+ FY P L EEIRL++P II+ +G
Sbjct:   11 HQELVEALNNLGGDPLEQWGGNIVIYRGNPAAKLMIIGEGPGANEDRLRKPFVGRSGKLLDQILSAVNFNPEQDVYISNVVRRRPPKNRDPLPKEIAFYAPYLFEEIRLLDPKIILLIG 129          
BLAST of mRNA_H-paniculata_contig32948.8833.1 vs. uniprot
Match: A0A7S3A2Z9_9RHOD (Type-4 uracil-DNA glycosylase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A2Z9_9RHOD)

HSP 1 Score: 150 bits (378), Expect = 4.100e-43
Identity = 70/109 (64.22%), Postives = 89/109 (81.65%), Query Frame = 1
Query:   52 MRGDPLEEHGGRVVVYRGNPQARLMMVGEAPGAEEDMQGLPFVGRSGQLLDDILRAVGLDPEEDAYVTNIVRRRPPNNRPPTSEELDFYLPALLEEIRLVNPDIIVTLG 378
            +R DPL   GGR+V YRGNP+A+LM+VGE PG +ED++G PFVGRSG+LLD ILR+V LDPEED YVTN V+RRP +NR PT +E+++YLP L EE+RLV+P +IV  G
Sbjct:   46 IRDDPLASDGGRIVHYRGNPRAKLMVVGEGPGEQEDIEGKPFVGRSGKLLDKILRSVELDPEEDVYVTNTVKRRPKDNRDPTRDEIEWYLPYLSEEVRLVDPHVIVCSG 154          
BLAST of mRNA_H-paniculata_contig32948.8833.1 vs. uniprot
Match: A0A1W9W486_9CHLR (Type-4 uracil-DNA glycosylase n=1 Tax=Anaerolineaceae bacterium 4572_78 TaxID=1972460 RepID=A0A1W9W486_9CHLR)

HSP 1 Score: 146 bits (369), Expect = 5.180e-42
Identity = 72/119 (60.50%), Postives = 88/119 (73.95%), Query Frame = 1
Query:   22 HQAFVQDLLAMRGDPLEEHGGRVVVYRGNPQARLMMVGEAPGAEEDMQGLPFVGRSGQLLDDILRAVGLDPEEDAYVTNIVRRRPPNNRPPTSEELDFYLPALLEEIRLVNPDIIVTLG 378
            HQA V+ L  +  DPLE  G  +V+YRG P+A LM++GEAPGAEED  G PFVGRSGQLLD IL+AV  + E D Y+TN ++RRPPNNR P  EEL++Y P L EEIRLV+P II+  G
Sbjct:   15 HQALVETLKNLTDDPLESTGSNMVIYRGYPKADLMIIGEAPGAEEDKIGKPFVGRSGQLLDKILQAVHFNIETDIYITNTLKRRPPNNRNPKQEELEYYFPFLAEEIRLVDPKIILLAG 133          
BLAST of mRNA_H-paniculata_contig32948.8833.1 vs. uniprot
Match: A0A7S2SWN2_9CHLO (Type-4 uracil-DNA glycosylase n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A7S2SWN2_9CHLO)

HSP 1 Score: 149 bits (375), Expect = 7.790e-42
Identity = 69/119 (57.98%), Postives = 94/119 (78.99%), Query Frame = 1
Query:   22 HQAFVQDLLAMRGDPLEEHGGRVVVYRGNPQARLMMVGEAPGAEEDMQGLPFVGRSGQLLDDILRAVGLDPEEDAYVTNIVRRRPPNNRPPTSEELDFYLPALLEEIRLVNPDIIVTLG 378
            H A ++ + +++GDPLE  G R+V YRGNP+A++M++GEAPGAEED QG PFVG+SGQLLD+IL +VG + E+D Y+TNIV+RRPPNNR P   E+  Y P + EEIRL++P II+ +G
Sbjct:  108 HDALMESMKSLKGDPLETTGSRIVTYRGNPEAKIMVIGEAPGAEEDRQGKPFVGKSGQLLDNILGSVGFE-EDDVYITNIVKRRPPNNRTPLKWEILAYKPWIAEEIRLIDPYIIMLVG 225          
BLAST of mRNA_H-paniculata_contig32948.8833.1 vs. uniprot
Match: A0A7S2S1J0_9STRA (Type-4 uracil-DNA glycosylase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S1J0_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.710e-41
Identity = 71/112 (63.39%), Postives = 87/112 (77.68%), Query Frame = 1
Query:   43 LLAMRGDPLEEHGGRVVVYRGNPQARLMMVGEAPGAEEDMQGLPFVGRSGQLLDDILRAVGLDPEEDAYVTNIVRRRPPNNRPPTSEELDFYLPALLEEIRLVNPDIIVTLG 378
            L  + GDPLEE GGRVV YRGNP A++++VGEAPGA ED  G+P+VGR+G+LLD IL A G D EED Y TN+V+RRPP NR PT+ EL +Y P LLEE+RLV+P I+V  G
Sbjct:   35 LAGLSGDPLEEFGGRVVHYRGNPGAKVVVVGEAPGATEDELGVPYVGRAGKLLDQILTAAGFDVEEDVYFTNVVKRRPPENRDPTAAELRYYSPLLLEELRLVDPWIVVCTG 146          
BLAST of mRNA_H-paniculata_contig32948.8833.1 vs. uniprot
Match: A0A7S3CC74_9CHLO (Type-4 uracil-DNA glycosylase n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CC74_9CHLO)

HSP 1 Score: 145 bits (367), Expect = 2.760e-41
Identity = 70/124 (56.45%), Postives = 93/124 (75.00%), Query Frame = 1
Query:    7 VDVNLHQAFVQDLLAMRGDPLEEHGGRVVVYRGNPQARLMMVGEAPGAEEDMQGLPFVGRSGQLLDDILRAVGLDPEEDAYVTNIVRRRPPNNRPPTSEELDFYLPALLEEIRLVNPDIIVTLG 378
            V    H A ++ + A++GDPLE  G +VV YRG+P A++M++GEAPGAEED QG PFVG+SGQLLD+IL +VG   E+D Y+TNIV+RRPPNNR P   E+  Y P + EEIRL++P II+ +G
Sbjct:   41 VSFGSHGALIEGMKALKGDPLETTGSKVVTYRGSPNAKIMVIGEAPGAEEDRQGKPFVGKSGQLLDNILGSVGFV-EDDVYITNIVKRRPPNNRTPLKWEILAYKPWIAEEIRLIDPSIIMLVG 163          
BLAST of mRNA_H-paniculata_contig32948.8833.1 vs. uniprot
Match: A0A7S2V4W6_9STRA (Type-4 uracil-DNA glycosylase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4W6_9STRA)

HSP 1 Score: 145 bits (366), Expect = 4.600e-41
Identity = 73/121 (60.33%), Postives = 91/121 (75.21%), Query Frame = 1
Query:   22 HQAFVQDLLAMRGDPLEEHGGRVVVYRGNPQARLMMVGEAPGAEEDMQGLPFVGRSGQLLDDILRAVGLD--PEEDAYVTNIVRRRPPNNRPPTSEELDFYLPALLEEIRLVNPDIIVTLG 378
            +  F Q   +M GDPL+  GG VVV+RGNP+ R+M+VGEAPG EED Q LPFVG++GQLL+ +L   G D  P+ + Y+TN+V+RRPPNNR PT EE+ FYLP L EEIRLV+PDIIV  G
Sbjct:   61 YDEFFQVTQSMEGDPLDG-GGSVVVFRGNPRGRVMVVGEAPGEEEDKQKLPFVGKAGQLLEKMLTEAGFDTGPQGEVYITNLVKRRPPNNRNPTPEEVSFYLPLLQEEIRLVDPDIIVCAG 180          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32948.8833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN93_ECTSI2.280e-5370.73Type-4 uracil-DNA glycosylase n=1 Tax=Ectocarpus s... [more]
A0A835YMS9_9STRA7.630e-4968.91Type-4 uracil-DNA glycosylase n=1 Tax=Tribonema mi... [more]
A0A3M1EZS2_9CHLR2.680e-4764.71Type-4 uracil-DNA glycosylase n=1 Tax=Caldilineae ... [more]
A0A7C3BN30_9CHLR3.680e-4357.98Type-4 uracil-DNA glycosylase n=2 Tax=Chloroflexi ... [more]
A0A7S3A2Z9_9RHOD4.100e-4364.22Type-4 uracil-DNA glycosylase n=1 Tax=Rhodosorus m... [more]
A0A1W9W486_9CHLR5.180e-4260.50Type-4 uracil-DNA glycosylase n=1 Tax=Anaerolineac... [more]
A0A7S2SWN2_9CHLO7.790e-4257.98Type-4 uracil-DNA glycosylase n=2 Tax=Chloropicon ... [more]
A0A7S2S1J0_9STRA1.710e-4163.39Type-4 uracil-DNA glycosylase n=1 Tax=Rhizochromul... [more]
A0A7S3CC74_9CHLO2.760e-4156.45Type-4 uracil-DNA glycosylase n=1 Tax=Chloropicon ... [more]
A0A7S2V4W6_9STRA4.600e-4160.33Type-4 uracil-DNA glycosylase n=1 Tax=Fibrocapsa j... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32948contigH-paniculata_contig32948:1232..2309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score178.7
Seed ortholog evalue1.7e-42
Seed eggNOG ortholog2880.D7FN93
Hectar predicted targeting categoryother localisation
EggNOG free text desc.UreE urease accessory protein, C-terminal domain
EggNOG OGs2EIJQ@1,2SNYZ@2759
Ec32 ortholog descriptionUracil-DNA glycosylase-like
Ec32 orthologEc-15_003440.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size378
Cds size378
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32948.8833.1prot_H-paniculata_contig32948.8833.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32948 1232..2309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930016.1930692-CDS-H-paniculata_contig32948:1231..13061622930016.1930692-CDS-H-paniculata_contig32948:1231..1306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32948 1232..1306 +
1691481111.0811543-CDS-H-paniculata_contig32948:1231..13061691481111.0811543-CDS-H-paniculata_contig32948:1231..1306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32948 1232..1306 +
1622930016.2109873-CDS-H-paniculata_contig32948:1699..18781622930016.2109873-CDS-H-paniculata_contig32948:1699..1878Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32948 1700..1878 +
1691481111.0913465-CDS-H-paniculata_contig32948:1699..18781691481111.0913465-CDS-H-paniculata_contig32948:1699..1878Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32948 1700..1878 +
1622930016.2251074-CDS-H-paniculata_contig32948:2185..23091622930016.2251074-CDS-H-paniculata_contig32948:2185..2309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32948 2186..2309 +
1691481111.100019-CDS-H-paniculata_contig32948:2185..23091691481111.100019-CDS-H-paniculata_contig32948:2185..2309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32948 2186..2309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32948.8833.1

>prot_H-paniculata_contig32948.8833.1 ID=prot_H-paniculata_contig32948.8833.1|Name=mRNA_H-paniculata_contig32948.8833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MMVDVNLHQAFVQDLLAMRGDPLEEHGGRVVVYRGNPQARLMMVGEAPGA
EEDMQGLPFVGRSGQLLDDILRAVGLDPEEDAYVTNIVRRRPPNNRPPTS
EELDFYLPALLEEIRLVNPDIIVTLG
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mRNA from alignment at H-paniculata_contig32948:1232..2309+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32948.8833.1 ID=mRNA_H-paniculata_contig32948.8833.1|Name=mRNA_H-paniculata_contig32948.8833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1078bp|location=Sequence derived from alignment at H-paniculata_contig32948:1232..2309+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGTAGATGTGAACCTGCATCAGGCATTCGTGCAGGATTTGTTAGC GATGAGAGGCGACCCACTGGAGGAGGTATGCTATTTCAGACACATACCGG TTAGCTTCGCTGTATACGCTATACTGCATGAAGCCCTTTTTTCTTTCGAT GTGTGAAGCGCACTTACGCGCAGCACGGTAGTTGTATTACTGTGAGTCTC TTGGAGTGCTGGGGCTTGTTCGTGACACAGGGTGGGGGACGGCGTTCAAA TAGAAAGAGGCGTGTAAAAAGCGACGCGCGGGTCATGCTCTTAGTTGCAG TGTATCTGCACTGTCAGGCAGGAGCGTCACGCACCGATCATATTGGGATC GAGTTAAAAATCACCGTCCATCAGTTGCACCGCTCTAAATAAAAAGATCC GTGTCTCAAAGTATACTAGTGTTGCAATGCCACATTCTCTCTCTTGCTTC CTTTTTCTCTCTCTACAGCACGGCGGAAGGGTGGTTGTTTACCGCGGCAA CCCTCAGGCGCGCTTGATGATGGTGGGAGAGGCACCTGGTGCCGAGGAAG ACATGCAAGGTCTTCCTTTCGTGGGCCGCTCTGGACAGTTATTGGATGAC ATCCTCAGAGCTGTTGGGTTGGATCCTGAAGAGGACGCATACGTTACGTG TGTATTTTCTTATTGCAATGCTATATATGCGGTAACGCATGCTTCTCCAG CGTTTGGTGGCATGCTTCTTTTCGCACGGTAGTCCGTTGTAGCGTATGGA AGTACAGTTGCACGCACTGTGAATGGATAGAGGATCAAGGACGATAGCTC TATGCAGTCAAGCGAGGCACTCGCGGGTCGACATCGTTAAAGGCAACACA TGCACGCAAATGGTGTGCAAATCGAATCGAACATTGCCCTAAGAAATGAA ACGACTGCTTTAGTCTCGTTTCCGTGTTTATTCTTGTGCTTTGCCGTTCT TCAGCAATATTGTGCGCCGGAGACCACCCAACAACAGACCTCCAACGTCG GAAGAGCTTGATTTTTACCTGCCTGCACTGTTAGAGGAGATCCGGTTGGT CAACCCTGATATCATTGTCACCCTCGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig32948:1232..2309+

>mRNA_H-paniculata_contig32948.8833.1 ID=mRNA_H-paniculata_contig32948.8833.1|Name=mRNA_H-paniculata_contig32948.8833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig32948:1232..2309+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGTAGATGTGAACCTGCATCAGGCATTCGTGCAGGATTTGTTAGC
GATGAGAGGCGACCCACTGGAGGAGATGATGGTAGATGTGAACCTGCATC
AGGCATTCGTGCAGGATTTGTTAGCGATGAGAGGCGACCCACTGGAGGAG
CACGGCGGAAGGGTGGTTGTTTACCGCGGCAACCCTCAGGCGCGCTTGAT
GATGGTGGGAGAGGCACCTGGTGCCGAGGAAGACATGCAAGGTCTTCCTT
TCGTGGGCCGCTCTGGACAGTTATTGGATGACATCCTCAGAGCTGTTGGG
TTGGATCCTGAAGAGGACGCATACGTTACCACGGCGGAAGGGTGGTTGTT
TACCGCGGCAACCCTCAGGCGCGCTTGATGATGGTGGGAGAGGCACCTGG
TGCCGAGGAAGACATGCAAGGTCTTCCTTTCGTGGGCCGCTCTGGACAGT
TATTGGATGACATCCTCAGAGCTGTTGGGTTGGATCCTGAAGAGGACGCA
TACGTTACCAATATTGTGCGCCGGAGACCACCCAACAACAGACCTCCAAC
GTCGGAAGAGCTTGATTTTTACCTGCCTGCACTGTTAGAGGAGATCCGGT
TGGTCAACCCTGATATCATTGTCACCCTCGGTCAATATTGTGCGCCGGAG
ACCACCCAACAACAGACCTCCAACGTCGGAAGAGCTTGATTTTTACCTGC
CTGCACTGTTAGAGGAGATCCGGTTGGTCAACCCTGATATCATTGTCACC
CTCGGT
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