mRNA_H-paniculata_contig32948.8833.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig32948.8833.1 vs. uniprot
Match: D7FN93_ECTSI (Type-4 uracil-DNA glycosylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN93_ECTSI) HSP 1 Score: 179 bits (455), Expect = 2.280e-53 Identity = 87/123 (70.73%), Postives = 102/123 (82.93%), Query Frame = 1
Query: 10 DVNLHQAFVQDLLAMRGDPLEEHGGRVVVYRGNPQARLMMVGEAPGAEEDMQGLPFVGRSGQLLDDILRAVGLDPEEDAYVTNIVRRRPPNNRPPTSEELDFYLPALLEEIRLVNPDIIVTLG 378
D H+AFV+ LL + GDPLEE GGRVVV+RG+P A LM++GEAPGAEED G+PFVGRSGQLLDD+LRAVG DPE + YV+NIVRRRP +NR PT EE+DFYLP LLEEI LV+P +IV LG
Sbjct: 135 DAEGHRAFVEKLLTLTGDPLEEDGGRVVVFRGDPSASLMLIGEAPGAEEDRLGVPFVGRSGQLLDDMLRAVGFDPEREVYVSNIVRRRPIDNRTPTPEEMDFYLPFLLEEIGLVDPHVIVLLG 257
BLAST of mRNA_H-paniculata_contig32948.8833.1 vs. uniprot
Match: A0A835YMS9_9STRA (Type-4 uracil-DNA glycosylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMS9_9STRA) HSP 1 Score: 166 bits (419), Expect = 7.630e-49 Identity = 82/119 (68.91%), Postives = 93/119 (78.15%), Query Frame = 1
Query: 22 HQAFVQDLLAMRGDPLEEHGGRVVVYRGNPQARLMMVGEAPGAEEDMQGLPFVGRSGQLLDDILRAVGLDPEEDAYVTNIVRRRPPNNRPPTSEELDFYLPALLEEIRLVNPDIIVTLG 378
H LLA+ GDPLE GGR+VVYRG+PQA+LM+VGEAPGA ED G PFVGRSGQLLD IL+A G DPE D YV+NIVRRRPP NR PT+ E+ +Y P LLEEIRLVNP II+T G
Sbjct: 60 HAEMTAALLALTGDPLEPAGGRIVVYRGDPQAKLMVVGEAPGAMEDETGKPFVGRSGQLLDAILKAAGFDPETDLYVSNIVRRRPPENRDPTTAEIAYYRPWLLEEIRLVNPAIIITTG 178
BLAST of mRNA_H-paniculata_contig32948.8833.1 vs. uniprot
Match: A0A3M1EZS2_9CHLR (Type-4 uracil-DNA glycosylase n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1EZS2_9CHLR) HSP 1 Score: 160 bits (405), Expect = 2.680e-47 Identity = 77/119 (64.71%), Postives = 91/119 (76.47%), Query Frame = 1
Query: 22 HQAFVQDLLAMRGDPLEEHGGRVVVYRGNPQARLMMVGEAPGAEEDMQGLPFVGRSGQLLDDILRAVGLDPEEDAYVTNIVRRRPPNNRPPTSEELDFYLPALLEEIRLVNPDIIVTLG 378
HQA V+ L + GDPLE GG +V+YRGNP A+LM++GE PGAEED PFVGRSGQLLD ILRAV DPE D Y+TN+V+RRPP NR PT EE++FY P L EEIRLV+P II+ G
Sbjct: 30 HQALVEALENLTGDPLEPWGGNMVIYRGNPAAKLMVIGEGPGAEEDRLRKPFVGRSGQLLDKILRAVHFDPETDVYITNVVKRRPPENRDPTPEEINFYAPYLFEEIRLVDPKIIMLTG 148
BLAST of mRNA_H-paniculata_contig32948.8833.1 vs. uniprot
Match: A0A7C3BN30_9CHLR (Type-4 uracil-DNA glycosylase n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A7C3BN30_9CHLR) HSP 1 Score: 149 bits (376), Expect = 3.680e-43 Identity = 69/119 (57.98%), Postives = 89/119 (74.79%), Query Frame = 1
Query: 22 HQAFVQDLLAMRGDPLEEHGGRVVVYRGNPQARLMMVGEAPGAEEDMQGLPFVGRSGQLLDDILRAVGLDPEEDAYVTNIVRRRPPNNRPPTSEELDFYLPALLEEIRLVNPDIIVTLG 378
HQ V+ L + GDPLE+ GG +V+YRGNP A+LM++GE PGA ED PFVGRSG+LLD IL AV +PE+D Y++N+VRRRPP NR P +E+ FY P L EEIRL++P II+ +G
Sbjct: 11 HQELVEALNNLGGDPLEQWGGNIVIYRGNPAAKLMIIGEGPGANEDRLRKPFVGRSGKLLDQILSAVNFNPEQDVYISNVVRRRPPKNRDPLPKEIAFYAPYLFEEIRLLDPKIILLIG 129
BLAST of mRNA_H-paniculata_contig32948.8833.1 vs. uniprot
Match: A0A7S3A2Z9_9RHOD (Type-4 uracil-DNA glycosylase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A2Z9_9RHOD) HSP 1 Score: 150 bits (378), Expect = 4.100e-43 Identity = 70/109 (64.22%), Postives = 89/109 (81.65%), Query Frame = 1
Query: 52 MRGDPLEEHGGRVVVYRGNPQARLMMVGEAPGAEEDMQGLPFVGRSGQLLDDILRAVGLDPEEDAYVTNIVRRRPPNNRPPTSEELDFYLPALLEEIRLVNPDIIVTLG 378
+R DPL GGR+V YRGNP+A+LM+VGE PG +ED++G PFVGRSG+LLD ILR+V LDPEED YVTN V+RRP +NR PT +E+++YLP L EE+RLV+P +IV G
Sbjct: 46 IRDDPLASDGGRIVHYRGNPRAKLMVVGEGPGEQEDIEGKPFVGRSGKLLDKILRSVELDPEEDVYVTNTVKRRPKDNRDPTRDEIEWYLPYLSEEVRLVDPHVIVCSG 154
BLAST of mRNA_H-paniculata_contig32948.8833.1 vs. uniprot
Match: A0A1W9W486_9CHLR (Type-4 uracil-DNA glycosylase n=1 Tax=Anaerolineaceae bacterium 4572_78 TaxID=1972460 RepID=A0A1W9W486_9CHLR) HSP 1 Score: 146 bits (369), Expect = 5.180e-42 Identity = 72/119 (60.50%), Postives = 88/119 (73.95%), Query Frame = 1
Query: 22 HQAFVQDLLAMRGDPLEEHGGRVVVYRGNPQARLMMVGEAPGAEEDMQGLPFVGRSGQLLDDILRAVGLDPEEDAYVTNIVRRRPPNNRPPTSEELDFYLPALLEEIRLVNPDIIVTLG 378
HQA V+ L + DPLE G +V+YRG P+A LM++GEAPGAEED G PFVGRSGQLLD IL+AV + E D Y+TN ++RRPPNNR P EEL++Y P L EEIRLV+P II+ G
Sbjct: 15 HQALVETLKNLTDDPLESTGSNMVIYRGYPKADLMIIGEAPGAEEDKIGKPFVGRSGQLLDKILQAVHFNIETDIYITNTLKRRPPNNRNPKQEELEYYFPFLAEEIRLVDPKIILLAG 133
BLAST of mRNA_H-paniculata_contig32948.8833.1 vs. uniprot
Match: A0A7S2SWN2_9CHLO (Type-4 uracil-DNA glycosylase n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A7S2SWN2_9CHLO) HSP 1 Score: 149 bits (375), Expect = 7.790e-42 Identity = 69/119 (57.98%), Postives = 94/119 (78.99%), Query Frame = 1
Query: 22 HQAFVQDLLAMRGDPLEEHGGRVVVYRGNPQARLMMVGEAPGAEEDMQGLPFVGRSGQLLDDILRAVGLDPEEDAYVTNIVRRRPPNNRPPTSEELDFYLPALLEEIRLVNPDIIVTLG 378
H A ++ + +++GDPLE G R+V YRGNP+A++M++GEAPGAEED QG PFVG+SGQLLD+IL +VG + E+D Y+TNIV+RRPPNNR P E+ Y P + EEIRL++P II+ +G
Sbjct: 108 HDALMESMKSLKGDPLETTGSRIVTYRGNPEAKIMVIGEAPGAEEDRQGKPFVGKSGQLLDNILGSVGFE-EDDVYITNIVKRRPPNNRTPLKWEILAYKPWIAEEIRLIDPYIIMLVG 225
BLAST of mRNA_H-paniculata_contig32948.8833.1 vs. uniprot
Match: A0A7S2S1J0_9STRA (Type-4 uracil-DNA glycosylase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S1J0_9STRA) HSP 1 Score: 148 bits (373), Expect = 1.710e-41 Identity = 71/112 (63.39%), Postives = 87/112 (77.68%), Query Frame = 1
Query: 43 LLAMRGDPLEEHGGRVVVYRGNPQARLMMVGEAPGAEEDMQGLPFVGRSGQLLDDILRAVGLDPEEDAYVTNIVRRRPPNNRPPTSEELDFYLPALLEEIRLVNPDIIVTLG 378
L + GDPLEE GGRVV YRGNP A++++VGEAPGA ED G+P+VGR+G+LLD IL A G D EED Y TN+V+RRPP NR PT+ EL +Y P LLEE+RLV+P I+V G
Sbjct: 35 LAGLSGDPLEEFGGRVVHYRGNPGAKVVVVGEAPGATEDELGVPYVGRAGKLLDQILTAAGFDVEEDVYFTNVVKRRPPENRDPTAAELRYYSPLLLEELRLVDPWIVVCTG 146
BLAST of mRNA_H-paniculata_contig32948.8833.1 vs. uniprot
Match: A0A7S3CC74_9CHLO (Type-4 uracil-DNA glycosylase n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CC74_9CHLO) HSP 1 Score: 145 bits (367), Expect = 2.760e-41 Identity = 70/124 (56.45%), Postives = 93/124 (75.00%), Query Frame = 1
Query: 7 VDVNLHQAFVQDLLAMRGDPLEEHGGRVVVYRGNPQARLMMVGEAPGAEEDMQGLPFVGRSGQLLDDILRAVGLDPEEDAYVTNIVRRRPPNNRPPTSEELDFYLPALLEEIRLVNPDIIVTLG 378
V H A ++ + A++GDPLE G +VV YRG+P A++M++GEAPGAEED QG PFVG+SGQLLD+IL +VG E+D Y+TNIV+RRPPNNR P E+ Y P + EEIRL++P II+ +G
Sbjct: 41 VSFGSHGALIEGMKALKGDPLETTGSKVVTYRGSPNAKIMVIGEAPGAEEDRQGKPFVGKSGQLLDNILGSVGFV-EDDVYITNIVKRRPPNNRTPLKWEILAYKPWIAEEIRLIDPSIIMLVG 163
BLAST of mRNA_H-paniculata_contig32948.8833.1 vs. uniprot
Match: A0A7S2V4W6_9STRA (Type-4 uracil-DNA glycosylase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4W6_9STRA) HSP 1 Score: 145 bits (366), Expect = 4.600e-41 Identity = 73/121 (60.33%), Postives = 91/121 (75.21%), Query Frame = 1
Query: 22 HQAFVQDLLAMRGDPLEEHGGRVVVYRGNPQARLMMVGEAPGAEEDMQGLPFVGRSGQLLDDILRAVGLD--PEEDAYVTNIVRRRPPNNRPPTSEELDFYLPALLEEIRLVNPDIIVTLG 378
+ F Q +M GDPL+ GG VVV+RGNP+ R+M+VGEAPG EED Q LPFVG++GQLL+ +L G D P+ + Y+TN+V+RRPPNNR PT EE+ FYLP L EEIRLV+PDIIV G
Sbjct: 61 YDEFFQVTQSMEGDPLDG-GGSVVVFRGNPRGRVMVVGEAPGEEEDKQKLPFVGKAGQLLEKMLTEAGFDTGPQGEVYITNLVKRRPPNNRNPTPEEVSFYLPLLQEEIRLVDPDIIVCAG 180 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32948.8833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig32948.8833.1 >prot_H-paniculata_contig32948.8833.1 ID=prot_H-paniculata_contig32948.8833.1|Name=mRNA_H-paniculata_contig32948.8833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp MMVDVNLHQAFVQDLLAMRGDPLEEHGGRVVVYRGNPQARLMMVGEAPGAback to top mRNA from alignment at H-paniculata_contig32948:1232..2309+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig32948.8833.1 ID=mRNA_H-paniculata_contig32948.8833.1|Name=mRNA_H-paniculata_contig32948.8833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1078bp|location=Sequence derived from alignment at H-paniculata_contig32948:1232..2309+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig32948:1232..2309+ >mRNA_H-paniculata_contig32948.8833.1 ID=mRNA_H-paniculata_contig32948.8833.1|Name=mRNA_H-paniculata_contig32948.8833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig32948:1232..2309+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |