mRNA_H-paniculata_contig32941.8832.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig32941.8832.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 216 bits (549), Expect = 1.560e-70 Identity = 115/124 (92.74%), Postives = 118/124 (95.16%), Query Frame = 1
Query: 1 MSGKGKGGRGDGKKSMTRSTKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHTVLLPKKVVKK 372
MSGKGKGGRG KKS TRS KAGLQFPVGR+GRFLK+GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIH VLLPKK VKK
Sbjct: 1 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
BLAST of mRNA_H-paniculata_contig32941.8832.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 214 bits (544), Expect = 5.340e-69 Identity = 114/123 (92.68%), Postives = 117/123 (95.12%), Query Frame = 1
Query: 1 MSGKGKGGRGDGKKSMTRSTKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHTVLLPKKVVK 369
MSGKGKGGRG KKS TRS KAGLQFPVGR+GRFLK+GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIH VLLPKK VK
Sbjct: 46 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
BLAST of mRNA_H-paniculata_contig32941.8832.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 204 bits (519), Expect = 8.950e-66 Identity = 108/120 (90.00%), Postives = 115/120 (95.83%), Query Frame = 1
Query: 1 MSGKGKGGRGDGKKSMTRSTKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHTVLLPKK 360
MSGKGKGGRG KKS ++S+KAGLQFPV RIGR+LK+GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIH VLLPKK
Sbjct: 1 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_H-paniculata_contig32941.8832.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 204 bits (519), Expect = 4.570e-65 Identity = 108/120 (90.00%), Postives = 115/120 (95.83%), Query Frame = 1
Query: 1 MSGKGKGGRGDGKKSMTRSTKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHTVLLPKK 360
MSGKGKGGRG KKS ++S+KAGLQFPV RIGR+LK+GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIH VLLPKK
Sbjct: 52 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169
BLAST of mRNA_H-paniculata_contig32941.8832.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 201 bits (511), Expect = 8.820e-65 Identity = 106/120 (88.33%), Postives = 112/120 (93.33%), Query Frame = 1
Query: 1 MSGKGKGGRGDGKKSMTRSTKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHTVLLPKK 360
MSGKGKGGRG KK +RS KAGLQFPVGRIGRF+KQGKY+SRVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELN+LLG+ TIASGGVLPNIH VLLPKK
Sbjct: 1 MSGKGKGGRG--KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_H-paniculata_contig32941.8832.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 199 bits (505), Expect = 7.990e-64 Identity = 106/123 (86.18%), Postives = 113/123 (91.87%), Query Frame = 1
Query: 1 MSGKGKGGRGDGKKSMTRSTKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHTVLLPKKVVK 369
MSGKGKGGRG GKKS T S KAGLQFPVGRIGR+L+QGKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIH VLLPKK K
Sbjct: 1 MSGKGKGGRG-GKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
BLAST of mRNA_H-paniculata_contig32941.8832.1 vs. uniprot
Match: A0A061QUG5_9CHLO (Histone H2A n=4 Tax=core chlorophytes TaxID=2692248 RepID=A0A061QUG5_9CHLO) HSP 1 Score: 198 bits (504), Expect = 1.670e-63 Identity = 103/124 (83.06%), Postives = 115/124 (92.74%), Query Frame = 1
Query: 1 MSGKGKGGRGDGKKSMTRSTKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHTVLLPKKVVKK 372
MSG+GKG GKK+++RS KAGLQFPVGR+ R+LK+GKYA+R+GAGAPVYLAAVLEYLTAEVLELAGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG+VTIASGGVLPNIH+VLLPKK KK
Sbjct: 1 MSGRGKGKSAAGKKAVSRSAKAGLQFPVGRVARYLKKGKYATRIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIASGGVLPNIHSVLLPKKSDKK 124
BLAST of mRNA_H-paniculata_contig32941.8832.1 vs. uniprot
Match: A0A835ZBB6_9STRA (Histone H2A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBB6_9STRA) HSP 1 Score: 197 bits (502), Expect = 3.160e-63 Identity = 104/126 (82.54%), Postives = 114/126 (90.48%), Query Frame = 1
Query: 1 MSGKGKGGRG-DGKKSMTRSTKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHTVLLPKKVVKKA 375
M+GKGKGGRG +GKK ++S KAGLQFPV R+GR+LKQG+YA RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHIQLAVRNDEELN+LLG VTIASGGVLPNIH VLLPKK KA
Sbjct: 1 MAGKGKGGRGAEGKKITSQSAKAGLQFPVARMGRYLKQGRYADRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNRLLGNVTIASGGVLPNIHAVLLPKKTAAKA 126
BLAST of mRNA_H-paniculata_contig32941.8832.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA) HSP 1 Score: 197 bits (502), Expect = 4.100e-63 Identity = 101/123 (82.11%), Postives = 115/123 (93.50%), Query Frame = 1
Query: 7 GKGKGGRGDGKKSMTRSTKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHTVLLPKKVVKKA 375
GKGKGGRGD KK++++S KAGLQFPVGR+GRFLKQG+YA RVGAGAPVY+AAV+EYL AEVLEL+GNAARDNKK+RI+PRHIQLAVRNDEELNKLLG+VTIA+GGVLPNIH VLLPKK K+
Sbjct: 5 GKGKGGRGD-KKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSKS 126
BLAST of mRNA_H-paniculata_contig32941.8832.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA) HSP 1 Score: 197 bits (500), Expect = 4.620e-63 Identity = 103/120 (85.83%), Postives = 112/120 (93.33%), Query Frame = 1
Query: 1 MSGKGKGGRGDGKKSMTRSTKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHTVLLPKK 360
MSGKGKGGRG+ KKS T S KAGLQFPVGRIGR+L+QGKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIH +LLPKK
Sbjct: 1 MSGKGKGGRGE-KKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKK 119 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32941.8832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig32941.8832.1 >prot_H-paniculata_contig32941.8832.1 ID=prot_H-paniculata_contig32941.8832.1|Name=mRNA_H-paniculata_contig32941.8832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp MSGKGKGGRGDGKKSMTRSTKAGLQFPVGRIGRFLKQGKYASRVGAGAPVback to top mRNA from alignment at H-paniculata_contig32941:1643..2020+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig32941.8832.1 ID=mRNA_H-paniculata_contig32941.8832.1|Name=mRNA_H-paniculata_contig32941.8832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=378bp|location=Sequence derived from alignment at H-paniculata_contig32941:1643..2020+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig32941:1643..2020+ >mRNA_H-paniculata_contig32941.8832.1 ID=mRNA_H-paniculata_contig32941.8832.1|Name=mRNA_H-paniculata_contig32941.8832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig32941:1643..2020+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |