mRNA_H-paniculata_contig3294.8831.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3294.8831.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 257 bits (656), Expect = 3.150e-80 Identity = 131/246 (53.25%), Postives = 162/246 (65.85%), Query Frame = 1
Query: 1 LQVLGRGNCFDDISQMSLMGESTVQGAFHKFCKKFSAELFHEHIFLPTGQDLEKVMHEYDRLGFTGVVGSTDVTHIKWDCCPCSFAQSYTGKEGFATIAYQATVDHIGRVLAVTKGFPGATNDKSIIRYDLAANIHHCPLRADPSLSQP-------------LHGVFICI-----QWAMFMLPSKRALCGEETRWSKTSESVRKDVECFFGVLKGRVRILKLPILYREKEDIENVFFACCIVHNML 684
LQ+L RGNCF DI MS + T FH+F + F+ E++ EHIFLPTG +KVM +YDRLGF+G GSTDVTHI W CP + A+SYTGKEG+ T+AYQ TVDH RVLAVT GF G+TNDKSIIRYD A +R DP S+ L G ++ + +W + PSK + + +SK ESVRKDVECFFG++KGR RILKL I Y ++EDI+NVFF CCI+HNML
Sbjct: 163 LQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVT----KIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNML 404
BLAST of mRNA_H-paniculata_contig3294.8831.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE) HSP 1 Score: 248 bits (633), Expect = 1.120e-77 Identity = 127/246 (51.63%), Postives = 163/246 (66.26%), Query Frame = 1
Query: 1 LQVLGRGNCFDDISQMSLMGESTVQGAFHKFCKKFSAELFHEHIFLPTGQDLEKVMHEYDRLGFTGVVGSTDVTHIKWDCCPCSFAQSYTGKEGFATIAYQATVDHIGRVLAVTKGFPGATNDKSIIRYDLAANIHHCPLRADPSLSQPLH-------------GVFICI-----QWAMFMLPSKRALCGEETRWSKTSESVRKDVECFFGVLKGRVRILKLPILYREKEDIENVFFACCIVHNML 684
LQ+L RGN F DI MS + TV FH+FCK F+AEL+ E+++LPTG+DL KVM +YDR+GF G VGSTDVTHI W CP + A+ YTGKEG T+A+Q TVDH GRVLAVT+GF GATNDK+IIRYD A +R DP ++ + G ++ + +W + PSK + + +SK ES RKDVEC+FG+LKGR RI KL I + ++E I+NVFF CCI+HNML
Sbjct: 88 LQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVT----RIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNML 329
BLAST of mRNA_H-paniculata_contig3294.8831.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 248 bits (633), Expect = 1.290e-76 Identity = 127/246 (51.63%), Postives = 163/246 (66.26%), Query Frame = 1
Query: 1 LQVLGRGNCFDDISQMSLMGESTVQGAFHKFCKKFSAELFHEHIFLPTGQDLEKVMHEYDRLGFTGVVGSTDVTHIKWDCCPCSFAQSYTGKEGFATIAYQATVDHIGRVLAVTKGFPGATNDKSIIRYDLAANIHHCPLRADPSLSQPLH-------------GVFICI-----QWAMFMLPSKRALCGEETRWSKTSESVRKDVECFFGVLKGRVRILKLPILYREKEDIENVFFACCIVHNML 684
LQ+L RGN F DI MS + TV FH+FCK F+AEL+ E+++LPTG+DL KVM +YDR+GF G VGSTDVTHI W CP + A+ YTGKEG T+A+Q TVDH GRVLAVT+GF GATNDK+IIRYD A +R DP ++ + G ++ + +W + PSK + + +SK ES RKDVEC+FG+LKGR RI KL I + ++E I+NVFF CCI+HNML
Sbjct: 179 LQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVT----RIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNML 420
BLAST of mRNA_H-paniculata_contig3294.8831.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE) HSP 1 Score: 240 bits (612), Expect = 5.640e-75 Identity = 122/237 (51.48%), Postives = 154/237 (64.98%), Query Frame = 1
Query: 1 LQVLGRGNCFDDISQMSLMGESTVQGAFHKFCKKFSAELFHEHIFLPTGQDLEKVMHEYDRLGFTGVVGSTDVTHIKWDCCPCSFAQSYTGKEGFATIAYQATVDHIGRVLAVTKGFPGATNDKSIIRYDLAANI---------HHCPLRADPSLSQPLHGVFICIQWAMFMLPSKRALCGEETRWSKTSESVRKDVECFFGVLKGRVRILKLPILYREKEDIENVFFACCIVHNML 684
L+VLG+GNCFDD+ Q+S M ES Q FHKFC+ +AE+F EHI+LPTG L++VM + +LG TG GSTDVTHI + CP + +S+TGKEGF TIAY+ TVDH GR LAVT GF G TNDK+ IRYD N LR + G F+ + + E+T +S+ ESVRKDVECFFG+LKGR RILKL + Y ++E I+N+FF CCI+HNML
Sbjct: 137 LKVLGKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYE-------SNEDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNML 366
BLAST of mRNA_H-paniculata_contig3294.8831.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE) HSP 1 Score: 235 bits (600), Expect = 3.520e-73 Identity = 121/241 (50.21%), Postives = 154/241 (63.90%), Query Frame = 1
Query: 4 QVLGRGNCFDDISQMSLMGESTVQGAFHKFCKKFSAELFHEHIFLPTGQDLEKVMHEYDRLGFTGVVGSTDVTHIKWDCCPCSFAQSYTGKEGFATIAYQATVDHIGRVLAVTKGFPGATNDKSIIRYDLAANI---------HHCPLRADPSLSQPLHGVFICI-----QWAMFMLPSKRALCGEETRWSKTSESVRKDVECFFGVLKGRVRILKLPILYREKEDIENVFFACCIVHNML 684
QVLG+GNCFDD+ Q+S M +S Q FHKFC+ F+AE+F EHI+LPTG L++VM + +LG+TG GSTDVTHI W+ CP + +S+TGKEGF TIAY TVDH GR LAVT GF GATNDK+IIRYD N LR + G F+ + +W + PSK E+T +S+ ESVRKDV CF RILKL + Y ++E ++N+FF CCI+HNML
Sbjct: 42 QVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGCF--------RILKLRMPYHKREYVDNIFFTCCILHNML 274
BLAST of mRNA_H-paniculata_contig3294.8831.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 234 bits (598), Expect = 4.870e-72 Identity = 128/272 (47.06%), Postives = 162/272 (59.56%), Query Frame = 1
Query: 1 LQVLGRGNCFDDISQMSLMGESTVQGAFHKFCKKFSAELFHEHIFLPTGQD--LEKVMHEYDRLGFTGVVGSTDVTHIKWDCCPCSFAQSYTGKEGFATIAYQATVDHIGRVLAVTKGFPGATNDKSIIRYDLAA-----NIHHCPLRA--------------------------------DPSLSQPLHGVFICI-----QWAMFMLPSKRALCGEETRWSKTSESVRKDVECFFGVLKGRVRILKLPILYREKEDIENVFFACCIVHNML 684
L +LGRGNCF I QMS M TVQG FHKFC+ F+ E++ E I LPT + L+ VM +YDRLGFTG VGS DVTHI W CP + A+SYTGKEGF TIAYQ TVDH GR +AVT+GF G+TNDK+I+ +D A + H+ + + L G ++ + +W + + PSK L + +SK ESVRKDVECFFG+LKGR RILKL + Y+ +E I+NVFF C I+HNML
Sbjct: 90 LTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNML 361
BLAST of mRNA_H-paniculata_contig3294.8831.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE) HSP 1 Score: 233 bits (594), Expect = 5.260e-72 Identity = 119/248 (47.98%), Postives = 158/248 (63.71%), Query Frame = 1
Query: 1 LQVLGRGNCFDDISQMSLMGESTVQGAFHKFCKKFSAELFHEHIFLPTGQ--DLEKVMHEYDRLGFTGVVGSTDVTHIKWDCCPCSFAQSYTGKEGFATIAYQATVDHIGRVLAVTKGFPGATNDKSIIRYDLAANIHHCPLRADPSLSQP-------------LHGVFICI-----QWAMFMLPSKRALCGEETRWSKTSESVRKDVECFFGVLKGRVRILKLPILYREKEDIENVFFACCIVHNML 684
L +LGRGNCF I Q+S M TVQ FHKFCK F+ E++ EHI+LP+ Q +L+ VM +YDRLGF+G +GS DVTHI W CP + A+SYTGKEG T+ YQ TV+H GR +AVT+GF +TNDK+ + +D +R D ++ L G ++ + +W + M P+K L + +SK ESVRKDVECFFG+LKG RI K+ + Y E+E I+NVFF CCI+HNML
Sbjct: 103 LTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVE----KIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNML 346
BLAST of mRNA_H-paniculata_contig3294.8831.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 227 bits (579), Expect = 5.280e-69 Identity = 119/248 (47.98%), Postives = 161/248 (64.92%), Query Frame = 1
Query: 1 LQVLGRGNCFDDISQMSLMGESTVQGAFHKFCKKFSAELFHEHIFLPTGQ--DLEKVMHEYDRLGFTGVVGSTDVTHIKWDCCPCSFAQSYTGKEGFATIAYQATVDHIGRVLAVTKGFPGATNDKSIIRYDLAANIHHCPLRADPSLSQP-------------LHGVFICI-----QWAMFMLPSKRALCGEETRWSKTSESVRKDVECFFGVLKGRVRILKLPILYREKEDIENVFFACCIVHNML 684
L +LGRGN F I +S M TVQ FH+FC+ F+ E++ EHIFLP+ + +L++VM +Y++LGF G +GSTDVTHI W CP + +SYTGKEG T+ YQ TV+H GRVLAVT+GF G+TNDK+II D A + +R D ++ L G ++ + +W M + PSK L + +SK ESVRKDVECFFG+LK R RILKL + Y+++E ++ VFF CCI+HNML
Sbjct: 132 LTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVD----RIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNML 375
BLAST of mRNA_H-paniculata_contig3294.8831.1 vs. uniprot
Match: A0A6H5K872_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K872_9PHAE) HSP 1 Score: 212 bits (540), Expect = 1.360e-63 Identity = 111/231 (48.05%), Postives = 144/231 (62.34%), Query Frame = 1
Query: 1 LQVLGRGNCFDDISQMSLMGESTVQGAFHKFCKKFSAELFHEHIFLPTGQDLEKVMHEYDRLGFTGVVGSTDVTHIKWDCCPCSFAQSYTGKEGFATIAYQATVDHIGRVLAVTKGFPGATNDKSIIRYDLAANIHHCPLRADPSLSQPLHGVFICIQWAMFMLPSKRALCGEETR---WSKTSESVRKDVECFFGVLKGRVRILKLPILYREKEDIENVFFACCIVHNML 684
L VLG+GNCFDD+ Q+S M S Q FHKFC+ F+AE+F EHIF PT L++ M + +LG TG STDVTHI + CP + +S+TGKEGF TIAY+ TVDH R LAVT GF GA NDK++I YD N +R + ++ + + ++A E TR +S +DVECFFG+LKGR RILKL + Y ++E I+N+FF CCI HNML
Sbjct: 102 LTVLGKGNCFDDVEQLSKMSISMAQATFHKFCRHFAAEMFDEHIFSPTETYLDEFMGIFHQLGCTGACRSTDVTHIDCNMCPFTLGRSFTGKEGFPTIAYEVTVDHASRALAVTNGFTGAMNDKTVIWYDSGVN----DIRTESQYTERQYKL-------------RKANGTERTRRGCFSIVDNGYHEDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCIRHNML 315
BLAST of mRNA_H-paniculata_contig3294.8831.1 vs. uniprot
Match: A0A6H5JIW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW4_9PHAE) HSP 1 Score: 206 bits (523), Expect = 6.280e-63 Identity = 106/227 (46.70%), Postives = 137/227 (60.35%), Query Frame = 1
Query: 4 QVLGRGNCFDDISQMSLMGESTVQGAFHKFCKKFSAELFHEHIFLPTGQDLEKVMHEYDRLGFTGVVGSTDVTHIKWDCCPCSFAQSYTGKEGFATIAYQATVDHIGRVLAVTKGFPGATNDKSIIRYDLAANIHHCPLRADPSLSQPLHGVFICIQWAMFMLPSKRALCGEETRWSKTSESVRKDVECFFGVLKGRVRILKLPILYREKEDIENVFFACCIVHNML 684
+VLG+G CFDD+ Q+S M +S Q FHKF + F+AE+F EHI+LPTG L++VM + +LG TG GSTDVTHI W+ CP + + +TGKEGF TIAY+ TVDH GR LAV GF GATNDK+ IRYD N +R + L Q +R + V + G+LKGR RILKL + Y ++E I+N+FF CCI+HNML
Sbjct: 3 RVLGKGTCFDDVEQLSKMSKSMAQATFHKFRRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGWNMCPFTLGRPFTGKEGFPTIAYEVTVDHAGRTLAVANGFTGATNDKTTIRYDSGVN----NIRTEYKLRQ-----------------GERHRANAPRMVIDGGQRVPRGCGVLLGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNML 208 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3294.8831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3294.8831.1 >prot_H-paniculata_contig3294.8831.1 ID=prot_H-paniculata_contig3294.8831.1|Name=mRNA_H-paniculata_contig3294.8831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=228bp LQVLGRGNCFDDISQMSLMGESTVQGAFHKFCKKFSAELFHEHIFLPTGQback to top mRNA from alignment at H-paniculata_contig3294:15381..16518- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3294.8831.1 ID=mRNA_H-paniculata_contig3294.8831.1|Name=mRNA_H-paniculata_contig3294.8831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1138bp|location=Sequence derived from alignment at H-paniculata_contig3294:15381..16518- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3294:15381..16518- >mRNA_H-paniculata_contig3294.8831.1 ID=mRNA_H-paniculata_contig3294.8831.1|Name=mRNA_H-paniculata_contig3294.8831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1368bp|location=Sequence derived from alignment at H-paniculata_contig3294:15381..16518- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |