mRNA_H-paniculata_contig32929.8829.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32929.8829.1
Unique NamemRNA_H-paniculata_contig32929.8829.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32929.8829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32929contigH-paniculata_contig32929:56..620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size545
Cds size453
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32929.8829.1prot_H-paniculata_contig32929.8829.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32929 56..529 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930015.776626-CDS-H-paniculata_contig32929:55..3721622930015.776626-CDS-H-paniculata_contig32929:55..372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32929 56..372 +
1691481110.9414096-CDS-H-paniculata_contig32929:55..3721691481110.9414096-CDS-H-paniculata_contig32929:55..372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32929 56..372 +
1622930015.7998443-CDS-H-paniculata_contig32929:393..5291622930015.7998443-CDS-H-paniculata_contig32929:393..529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32929 394..529 +
1691481110.9496543-CDS-H-paniculata_contig32929:393..5291691481110.9496543-CDS-H-paniculata_contig32929:393..529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32929 394..529 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930015.8184268-UTR-H-paniculata_contig32929:529..6201622930015.8184268-UTR-H-paniculata_contig32929:529..620Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32929 530..620 +
1691481110.9578228-UTR-H-paniculata_contig32929:529..6201691481110.9578228-UTR-H-paniculata_contig32929:529..620Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32929 530..620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32929.8829.1

>prot_H-paniculata_contig32929.8829.1 ID=prot_H-paniculata_contig32929.8829.1|Name=mRNA_H-paniculata_contig32929.8829.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
YRFNSGELCESICGQSLSTSAAFLAASCSRAAWRLSSKLSAHYGGGGLGE
ACPPLPRFGAVGPAAGRVGPPASFIVEPIFVKASRASAFKGPPLSLFPQT
SEDSSLAINSASVMALSTWRIFSCSKATRRTVWLSSMRSSTFTILFSSVD
*
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mRNA from alignment at H-paniculata_contig32929:56..620+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32929.8829.1 ID=mRNA_H-paniculata_contig32929.8829.1|Name=mRNA_H-paniculata_contig32929.8829.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=565bp|location=Sequence derived from alignment at H-paniculata_contig32929:56..620+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATAGATTCAACAGCGGGGAGCTGTGTGAATCTATCTGTGGCCAGAGCTT
ATCAACATCGGCAGCCTTCTTGGCTGCTTCCTGCTCTCGTGCAGCCTGGC
GCCTCTCGAGTAAACTGTCCGCACACTATGGGGGGGGAGGTTTGGGGGAA
GCTTGCCCGCCACTTCCGCGGTTTGGAGCAGTGGGGCCAGCTGCCGGACG
GGTGGGTCCCCCGGCTTCATTCATCGTGGAACCGATCTTTGTCAAAGCTT
CGCGAGCCTCCGCTTTCAAGGGGCCCCCTTTGTCACTGTTTCCACAGACG
TCAGAAGACAGTAGCTTGTAGCGTAGGTCCCAGTAGAGGGCGATCAACTC
TGCGTCAGTCATGGCGCTGTCCACCTGGCGCATCTTCAGCTGCTCCAAAG
CGACCCGCCGCACGGTGTGGCTGTCGTCCATGAGGTCATCAACTTTCACC
ATTTTGTTCTCCTCTGTAGACTAAAGAGACACGTCGCGCACGCGAAGACT
GCAGTGGCTGTGGCTGGGGCTAGGGCTGCGGCGTTACTTCATCCGCTGAT
GCAGCCGAGGTGTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig32929:56..620+

>mRNA_H-paniculata_contig32929.8829.1 ID=mRNA_H-paniculata_contig32929.8829.1|Name=mRNA_H-paniculata_contig32929.8829.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig32929:56..620+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATAGATTCAACAGCGGGGAGCTGTGTGAATCTATCTGTGGCCAGAGCTT
ATCAACATCGGCAGCCTTCTTGGCTGCTTCCTGCTCTCGTGCAGCCTGGC
GCCTCTCGAGTAAACTGTCCGCACACTATGGGGGGGGAGGTTTGGGGGAA
GCTTGCCCGCCACTTCCGCGGTTTGGAGCAGTGGGGCCAGCTGCCGGACG
GGTGGGTCCCCCGGCTTCATTCATCGTGGAACCGATCTTTGTCAAAGCTT
CGCGAGCCTCCGCTTTCAAGGGGCCCCCTTTGTCACTGTTTCCACAGACG
TCAGAAGACAGTAGCTTTATAGATTCAACAGCGGGGAGCTGTGTGAATCT
ATCTGTGGCCAGAGCTTATCAACATCGGCAGCCTTCTTGGCTGCTTCCTG
CTCTCGTGCAGCCTGGCGCCTCTCGAGTAAACTGTCCGCACACTATGGGG
GGGGAGGTTTGGGGGAAGCTTGCCCGCCACTTCCGCGGTTTGGAGCAGTG
GGGCCAGCTGCCGGACGGGTGGGTCCCCCGGCTTCATTCATCGTGGAACC
GATCTTTGTCAAAGCTTCGCGAGCCTCCGCTTTCAAGGGGCCCCCTTTGT
CACTGTTTCCACAGACGTCAGAAGACAGTAGCTTGGCGATCAACTCTGCG
TCAGTCATGGCGCTGTCCACCTGGCGCATCTTCAGCTGCTCCAAAGCGAC
CCGCCGCACGGTGTGGCTGTCGTCCATGAGGTCATCAACTTTCACCATTT
TGTTCTCCTCTGTAGACTAAGGCGATCAACTCTGCGTCAGTCATGGCGCT
GTCCACCTGGCGCATCTTCAGCTGCTCCAAAGCGACCCGCCGCACGGTGT
GGCTGTCGTCCATGAGGTCATCAACTTTCACCATTTTGTTCTCCTCTGTA
GACTAA
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