mRNA_H-paniculata_contig32901.8825.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32901.8825.1
Unique NamemRNA_H-paniculata_contig32901.8825.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig32901.8825.1 vs. uniprot
Match: D7FWK8_ECTSI (NAD_binding_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK8_ECTSI)

HSP 1 Score: 234 bits (598), Expect = 7.820e-75
Identity = 107/150 (71.33%), Postives = 130/150 (86.67%), Query Frame = 1
Query:    1 GFPIDENLNGFKYDFPVQNVVLTATGTGIAPLRAAIESKSLELPDEDDDGVFGRSCKLYWGCQSEETMPWADKMKDWEARGVEVVPVLSQPSEYSWKGRKGYVQEALKEDGVRVPRNTAVLMCGQKEMAEDVRALCYKAGVLEGRCLTNF 450
            GFPI EN  G+KYDFPVQNVVL+A+GTGIAP RAAIES +LELPD DDDGVFGRSCKLYWGC+ EE+MPW D+++ W+ RGVEVV VLSQPSE SW GR G+VQ+A+KE+G+ +PRN+AVL+CG KEMAE+V+ +  KAGVL+GR L+NF
Sbjct:  168 GFPIKENFTGYKYDFPVQNVVLSASGTGIAPFRAAIESGALELPDADDDGVFGRSCKLYWGCRDEESMPWKDRVEAWDKRGVEVVVVLSQPSE-SWTGRTGFVQQAIKEEGIPLPRNSAVLVCGHKEMAEEVKEIAEKAGVLDGRVLSNF 316          
BLAST of mRNA_H-paniculata_contig32901.8825.1 vs. uniprot
Match: A0A835YXH2_9STRA (NAD_binding_1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXH2_9STRA)

HSP 1 Score: 189 bits (479), Expect = 5.200e-57
Identity = 90/150 (60.00%), Postives = 111/150 (74.00%), Query Frame = 1
Query:    1 GFPIDENLNGFKYDFPVQNVVLTATGTGIAPLRAAIESKSLELPDEDDDGVFGRSCKLYWGCQSEETMPWADKMKDWEARGVEVVPVLSQPSEYSWKGRKGYVQEALKEDGVRVPRNTAVLMCGQKEMAEDVRALCYKAGVLEGRCLTNF 450
            GFPI E   G+KYDFPVQNV+L ATGTGIAP+RAAIES  LE+   D  G FGRSC LY+G  S E M + DK+++WE++G+ VVPV+S P+  +W GR G+VQ+AL EDGVRVPRNT  L+CGQKEM  +V+ +   AGV  GR L NF
Sbjct:  157 GFPIKEEFTGYKYDFPVQNVILVATGTGIAPIRAAIESGLLEV---DTSGPFGRSCTLYYGAHSPERMAYQDKLEEWESKGMTVVPVMSAPAAGAWNGRTGFVQKALGEDGVRVPRNTGALLCGQKEMVAEVKDILGGAGVFAGRQLLNF 303          
BLAST of mRNA_H-paniculata_contig32901.8825.1 vs. uniprot
Match: A0A7S1D246_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D246_CYCTE)

HSP 1 Score: 174 bits (442), Expect = 3.420e-53
Identity = 81/150 (54.00%), Postives = 110/150 (73.33%), Query Frame = 1
Query:    1 GFPIDENLNGFKYDFPVQNVVLTATGTGIAPLRAAIESKSLELPDEDDDGVFGRSCKLYWGCQSEETMPWADKMKDWEARGVEVVPVLSQPSEYSWKGRKGYVQEALKEDGVRVPRNTAVLMCGQKEMAEDVRALCYKAGVLEGRCLTNF 450
            GFP++E L GFKYDFP QN++L A G+GIAP+++A+ES  L L ++D  G+ GR+ +LY+G Q+ + + + DK  +WE  G EVVPVLSQP +  W+GR GYVQ AL+EDG+ +PRN+  L+CG K M E V+ L  +AGV EGR LTNF
Sbjct:   19 GFPVEEGLEGFKYDFPTQNILLFAAGSGIAPIKSAMESGQLNLSNKDG-GLGGRTARLYYGVQTPDDLCYTDKFAEWETMGFEVVPVLSQPPD-DWQGRTGYVQNALEEDGLPIPRNSGALLCGMKGMTESVKDLLTQAGVFEGRILTNF 166          
BLAST of mRNA_H-paniculata_contig32901.8825.1 vs. uniprot
Match: A0A1E7FVH1_9STRA (Ferredoxin reductase-like protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVH1_9STRA)

HSP 1 Score: 171 bits (433), Expect = 7.140e-51
Identity = 86/151 (56.95%), Postives = 109/151 (72.19%), Query Frame = 1
Query:    1 GFPIDENL-NGFKYDFPVQNVVLTATGTGIAPLRAAIESKSLELPDEDDDGVFGRSCKLYWGCQSEETMPWADKMKDWEARGVEVVPVLSQPSEYSWKGRKGYVQEALKEDGVRVPRNTAVLMCGQKEMAEDVRALCYKAGVLEGRCLTNF 450
            GFP+ + L N  KYDFP QN++L A G+GIAP+RAAIES  L+          GR+ +LY+G ++E+ M + DK  +WE+ G+EVVPVLSQPS+ +WKGR GYVQ AL+EDGV VPRN+  L+CGQK MAE V  +  KAGV EGR LTNF
Sbjct:   94 GFPVKDELDNVVKYDFPCQNILLFAAGSGIAPIRAAIESGELKTSKSG-----GRTARLYYGARTEDDMCFVDKFSEWESMGIEVVPVLSQPSD-TWKGRTGYVQNALEEDGVPVPRNSGALLCGQKGMAESVTEILTKAGVFEGRVLTNF 238          
BLAST of mRNA_H-paniculata_contig32901.8825.1 vs. uniprot
Match: B8C1N2_THAPS (NAD_binding_1 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1N2_THAPS)

HSP 1 Score: 173 bits (438), Expect = 2.700e-50
Identity = 82/155 (52.90%), Postives = 110/155 (70.97%), Query Frame = 1
Query:    1 GFPIDENLNGFKYDFPVQNVVLTATGTGIAPLRAAIESKSLELPDEDDDGVFGRSCKLYWGCQSEETMPWADKMKDWEARGVEVVPVLSQP-----SEYSWKGRKGYVQEALKEDGVRVPRNTAVLMCGQKEMAEDVRALCYKAGVLEGRCLTNF 450
            GFP+DEN+ GFKYDFP QN++L ATG+GIAP+R+AIESK L +      G  GR+C LY+G ++ + + +  K  +WE  GV+VVPV+SQP     S   W+GR GYVQ AL+EDGV +PRN+  L+CG K M E V+++  ++GV EGR LTNF
Sbjct:  200 GFPVDENIEGFKYDFPTQNLLLFATGSGIAPIRSAIESKRLNIAPP---GGGGRTCTLYYGARTPDDLSYVSKFPEWEELGVQVVPVISQPDLPNVSGAVWQGRTGYVQNALEEDGVAIPRNSGALLCGVKGMCEGVKSMLMESGVFEGRVLTNF 351          
BLAST of mRNA_H-paniculata_contig32901.8825.1 vs. uniprot
Match: A0A6U3NQ63_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3NQ63_9STRA)

HSP 1 Score: 172 bits (435), Expect = 3.740e-50
Identity = 85/152 (55.92%), Postives = 105/152 (69.08%), Query Frame = 1
Query:    1 GFPIDENLNGFKYDFPVQNVVLTATGTGIAPLRAAIESKSLELPDEDDDGVFGRSCKLYWGCQSEETMPWADKMKDWEARGVEVVPVLSQPSEYS--WKGRKGYVQEALKEDGVRVPRNTAVLMCGQKEMAEDVRALCYKAGVLEGRCLTNF 450
            GFP  EN+ GFKYDFP QNV+  ATG+GIAP+RAAIES  + +   +  G  GR+ +LY+G  + E MP+ADK   WE  G E+VPV+S+P E    W GR GYVQ AL+EDGV VPRN+A L+CG K M E V+ L   AGV EGR +TNF
Sbjct:  175 GFPTAENMEGFKYDFPTQNVLFFATGSGIAPIRAAIESGQMGV---NPPGQGGRTARLYYGVSTPEDMPYADKFAQWELAGFEIVPVVSRPEETGAEWFGRTGYVQNALEEDGVAVPRNSAALLCGVKGMTESVKDLLSNAGVFEGRIMTNF 323          
BLAST of mRNA_H-paniculata_contig32901.8825.1 vs. uniprot
Match: K0S9M0_THAOC (NAD_binding_1 domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S9M0_THAOC)

HSP 1 Score: 169 bits (427), Expect = 4.430e-50
Identity = 83/155 (53.55%), Postives = 108/155 (69.68%), Query Frame = 1
Query:    1 GFPIDENLNGFKYDFPVQNVVLTATGTGIAPLRAAIESKSLELPDEDDDGVFGRSCKLYWGCQSEETMPWADKMKDWEARGVEVVPVLSQP-----SEYSWKGRKGYVQEALKEDGVRVPRNTAVLMCGQKEMAEDVRALCYKAGVLEGRCLTNF 450
            GFP+ ENL GFKYDFP QNV+L ATG+GIAP+++AIES  L +         GR+C LY+G ++ + MP+  +  DWE  GV+VVPV+S+P     S   WKGR GYVQ AL+EDGV +PRN+  L+CG K MAE V ++  ++GV EGR LTNF
Sbjct:   82 GFPMRENLEGFKYDFPTQNVLLFATGSGIAPIKSAIESGQLNISG-------GRTCTLYYGVRTPDDMPYVARFGDWEDAGVQVVPVVSRPDAPCESGAVWKGRTGYVQNALEEDGVAIPRNSGALLCGVKGMAESVTSMLTQSGVFEGRVLTNF 229          
BLAST of mRNA_H-paniculata_contig32901.8825.1 vs. uniprot
Match: A0A7S0XQL6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0XQL6_9STRA)

HSP 1 Score: 165 bits (417), Expect = 2.140e-49
Identity = 86/151 (56.95%), Postives = 104/151 (68.87%), Query Frame = 1
Query:    1 GFPIDENLNGFKYDFPVQNVVLTATGTGIAPLRAAIESKSLELPDEDDDGVFG-RSCKLYWGCQSEETMPWADKMKDWEARGVEVVPVLSQPSEYSWKGRKGYVQEALKEDGVRVPRNTAVLMCGQKEMAEDVRALCYKAGVLEGRCLTNF 450
            GFP+ E L   KYDFP QN++L A G+GIAP+RAAIES  L        G  G R+ +LY+G ++E  + + D+   WE  GVEVVPVLSQPSE SW+GR GYVQ AL+EDGV +PRNT  LMCG K MAE  + +  KAGV EGR LTNF
Sbjct:   25 GFPMKEELESLKYDFPCQNILLFAAGSGIAPIRAAIESGEL--------GTSGARTARLYYGVRTEADLCFVDRFPLWEQAGVEVVPVLSQPSE-SWQGRTGYVQNALEEDGVPIPRNTGALMCGMKGMAEACKDILTKAGVFEGRVLTNF 166          
BLAST of mRNA_H-paniculata_contig32901.8825.1 vs. uniprot
Match: A0A7S3QJ99_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJ99_9STRA)

HSP 1 Score: 167 bits (424), Expect = 2.690e-48
Identity = 79/152 (51.97%), Postives = 105/152 (69.08%), Query Frame = 1
Query:    1 GFPIDENLNGFKYDFPVQNVVLTATGTGIAPLRAAIESKSLELPDEDDDGVFGRSCKLYWGCQSEETMPWADKMKDWEARGVEVVPVLSQPSEYS--WKGRKGYVQEALKEDGVRVPRNTAVLMCGQKEMAEDVRALCYKAGVLEGRCLTNF 450
            GFPI+E ++GFK+DFP+QN +L A G+GIAP+RAAIES  L +      G  GR+ +LY+GC +   MP+  K ++WE  G+EVVPV+S+P E    W GR GYVQ  ++EDGV +PRNT  L+CG K MAE ++ L   AGV E R +TNF
Sbjct:  194 GFPIEEEMSGFKHDFPLQNCLLFANGSGIAPIRAAIESGQLNI---GKPGEGGRTARLYFGCTTPADMPYLTKFREWETNGIEVVPVISRPEECEGEWTGRTGYVQNLVEEDGVAIPRNTGALLCGVKGMAESIKDLLTTAGVFESRVMTNF 342          
BLAST of mRNA_H-paniculata_contig32901.8825.1 vs. uniprot
Match: A0A7S2HMI7_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HMI7_9STRA)

HSP 1 Score: 166 bits (420), Expect = 7.740e-48
Identity = 82/152 (53.95%), Postives = 105/152 (69.08%), Query Frame = 1
Query:    1 GFPIDENLNGFKYDFPVQNVVLTATGTGIAPLRAAIESKSLELPDEDDDGVFGRSCKLYWGCQSEETMPWADKMKDWEARGVEVVPVLSQPSE--YSWKGRKGYVQEALKEDGVRVPRNTAVLMCGQKEMAEDVRALCYKAGVLEGRCLTNF 450
            GFP  EN+ GFKYDFP QNV+L A+G+GIAP+RAAIES  + +   +  G  GR+ +LY+G  +   MP+A+K   WE  G +VVPV+S+P +    W GR GYVQ AL+EDGV VPRN+A L+CG K M E V+ L   AGV EGR +TNF
Sbjct:  181 GFPTAENMEGFKYDFPTQNVLLFASGSGIAPIRAAIESGQMGV---NPPGKGGRTARLYYGVSTPGDMPYAEKFAQWEMAGFQVVPVVSRPEDAKQEWLGRTGYVQNALEEDGVPVPRNSAALLCGVKGMVESVKDLLSNAGVFEGRIMTNF 329          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32901.8825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWK8_ECTSI7.820e-7571.33NAD_binding_1 domain-containing protein n=1 Tax=Ec... [more]
A0A835YXH2_9STRA5.200e-5760.00NAD_binding_1 domain-containing protein n=1 Tax=Tr... [more]
A0A7S1D246_CYCTE3.420e-5354.00Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A1E7FVH1_9STRA7.140e-5156.95Ferredoxin reductase-like protein (Fragment) n=1 T... [more]
B8C1N2_THAPS2.700e-5052.90NAD_binding_1 domain-containing protein n=1 Tax=Th... [more]
A0A6U3NQ63_9STRA3.740e-5055.92Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K0S9M0_THAOC4.430e-5053.55NAD_binding_1 domain-containing protein (Fragment)... [more]
A0A7S0XQL6_9STRA2.140e-4956.95Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S3QJ99_9STRA2.690e-4851.97Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2HMI7_9STRA7.740e-4853.95Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32901contigH-paniculata_contig32901:1557..2204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score234.2
Seed ortholog evalue4e-59
Seed eggNOG ortholog2880.D7FWK8
KEGG koko:K20784
KEGG Pathwayko00514,map00514
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Oxidoreductase NAD-binding domain
EggNOG OGs2QQ7C@2759,COG0543@1
COG Functional cat.CH
CAZyGT77
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons2
Model size453
Cds size453
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930015.2921224-CDS-H-paniculata_contig32901:1556..17281622930015.2921224-CDS-H-paniculata_contig32901:1556..1728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32901 1557..1728 -
1691481110.7769206-CDS-H-paniculata_contig32901:1556..17281691481110.7769206-CDS-H-paniculata_contig32901:1556..1728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32901 1557..1728 -
1622930015.3093748-CDS-H-paniculata_contig32901:1923..22041622930015.3093748-CDS-H-paniculata_contig32901:1923..2204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32901 1924..2204 -
1691481110.7879636-CDS-H-paniculata_contig32901:1923..22041691481110.7879636-CDS-H-paniculata_contig32901:1923..2204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32901 1924..2204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32901.8825.1prot_H-paniculata_contig32901.8825.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32901 1557..2204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32901.8825.1

>prot_H-paniculata_contig32901.8825.1 ID=prot_H-paniculata_contig32901.8825.1|Name=mRNA_H-paniculata_contig32901.8825.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
GFPIDENLNGFKYDFPVQNVVLTATGTGIAPLRAAIESKSLELPDEDDDG
VFGRSCKLYWGCQSEETMPWADKMKDWEARGVEVVPVLSQPSEYSWKGRK
GYVQEALKEDGVRVPRNTAVLMCGQKEMAEDVRALCYKAGVLEGRCLTNF
*
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mRNA from alignment at H-paniculata_contig32901:1557..2204-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32901.8825.1 ID=mRNA_H-paniculata_contig32901.8825.1|Name=mRNA_H-paniculata_contig32901.8825.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=648bp|location=Sequence derived from alignment at H-paniculata_contig32901:1557..2204- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATTTCCCATCGACGAGAACTTGAACGGCTTCAAGTACGACTTTCCCGT CCAGAACGTGGTGCTCACGGCCACCGGCACGGGCATCGCGCCCCTCCGGG CCGCCATCGAGTCCAAGTCTTTAGAGCTTCCCGACGAAGACGACGACGGA GTGTTCGGGCGGTCCTGCAAGCTGTACTGGGGCTGTCAGAGCGAGGAGAC TATGCCTTGGGCAGACAAGATGAAGGATTGGGAAGCGAGGGGGGTGGAGG TGGTGCCCGTGTTGTCCCAGCCAAGTGAGTAGTGGTGGCAGTGATAGTAG TATATAGTACTTGTTGTTGTTGTTGCAGTTGTAGCAGTTATAGTAGTTAT GGTAGTTATGGTAGTTATAGACTGTCATATAACCTCAGTGTGTACACGTC AATTCGCACCCTGCACACTTAACCCTCTCTCGCCCCCCTCCGCCCTCACC GATCCACCCATCGGCACTTCAGGCAGTTCGTGGAAGGGACGCAAGGGCTA CGTGCAGGAGGCGCTGAAGGAAGACGGTGTGCGAGTGCCGCGCAACACGG CGGTGCTCATGTGCGGGCAGAAGGAAATGGCCGAAGACGTGCGGGCACTC TGTTACAAAGCCGGCGTGCTCGAGGGACGTTGCCTCACCAACTTCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig32901:1557..2204-

>mRNA_H-paniculata_contig32901.8825.1 ID=mRNA_H-paniculata_contig32901.8825.1|Name=mRNA_H-paniculata_contig32901.8825.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig32901:1557..2204- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATTTCCCATCGACGAGAACTTGAACGGCTTCAAGTACGACTTTCCCGT
CCAGAACGTGGTGCTCACGGCCACCGGCACGGGCATCGCGCCCCTCCGGG
CCGCCATCGAGTCCAAGTCTTTAGAGCTTCCCGACGAAGACGACGACGGA
GTGTTCGGGCGGTCCTGCAAGCTGTACTGGGGCTGTCAGAGCGAGGAGAC
TATGCCTTGGGCAGACAAGATGAAGGATTGGGAAGCGAGGGGGGTGGAGG
TGGTGCCCGTGTTGTCCCAGCCAAGTGAGTAGGATTTCCCATCGACGAGA
ACTTGAACGGCTTCAAGTACGACTTTCCCGTCCAGAACGTGGTGCTCACG
GCCACCGGCACGGGCATCGCGCCCCTCCGGGCCGCCATCGAGTCCAAGTC
TTTAGAGCTTCCCGACGAAGACGACGACGGAGTGTTCGGGCGGTCCTGCA
AGCTGTACTGGGGCTGTCAGAGCGAGGAGACTATGCCTTGGGCAGACAAG
ATGAAGGATTGGGAAGCGAGGGGGGTGGAGGTGGTGCCCGTGTTGTCCCA
GCCAAGTGAGTATTCGTGGAAGGGACGCAAGGGCTACGTGCAGGAGGCGC
TGAAGGAAGACGGTGTGCGAGTGCCGCGCAACACGGCGGTGCTCATGTGC
GGGCAGAAGGAAATGGCCGAAGACGTGCGGGCACTCTGTTACAAAGCCGG
CGTGCTCGAGGGACGTTGCCTCACCAACTTCTAATTCGTGGAAGGGACGC
AAGGGCTACGTGCAGGAGGCGCTGAAGGAAGACGGTGTGCGAGTGCCGCG
CAACACGGCGGTGCTCATGTGCGGGCAGAAGGAAATGGCCGAAGACGTGC
GGGCACTCTGTTACAAAGCCGGCGTGCTCGAGGGACGTTGCCTCACCAAC
TTCTAA
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