mRNA_H-paniculata_contig329.8821.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig329.8821.1
Unique NamemRNA_H-paniculata_contig329.8821.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig329.8821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig329contigH-paniculata_contig329:7699..8626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size423
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig329.8821.1prot_H-paniculata_contig329.8821.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig329 7717..8491 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930014.7034776-UTR-H-paniculata_contig329:7698..77161622930014.7034776-UTR-H-paniculata_contig329:7698..7716Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig329 7699..7716 +
1691481110.4994633-UTR-H-paniculata_contig329:7698..77161691481110.4994633-UTR-H-paniculata_contig329:7698..7716Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig329 7699..7716 +
1622930014.7356133-UTR-H-paniculata_contig329:8491..86261622930014.7356133-UTR-H-paniculata_contig329:8491..8626Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig329 8492..8626 +
1691481110.5426576-UTR-H-paniculata_contig329:8491..86261691481110.5426576-UTR-H-paniculata_contig329:8491..8626Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig329 8492..8626 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930014.7162123-CDS-H-paniculata_contig329:7716..78651622930014.7162123-CDS-H-paniculata_contig329:7716..7865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig329 7717..7865 +
1691481110.5128896-CDS-H-paniculata_contig329:7716..78651691481110.5128896-CDS-H-paniculata_contig329:7716..7865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig329 7717..7865 +
1622930014.7254481-CDS-H-paniculata_contig329:8370..84911622930014.7254481-CDS-H-paniculata_contig329:8370..8491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig329 8371..8491 +
1691481110.5299234-CDS-H-paniculata_contig329:8370..84911691481110.5299234-CDS-H-paniculata_contig329:8370..8491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig329 8371..8491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig329.8821.1

>prot_H-paniculata_contig329.8821.1 ID=prot_H-paniculata_contig329.8821.1|Name=mRNA_H-paniculata_contig329.8821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
MSKPSKFPQSPESRETAAECLREDASKSRRQRLRLFCFGSGRLFGAAMQR
YALKGQGNGQGFLRISLKPDLHSLDRVFTGECLSDEEER*
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mRNA from alignment at H-paniculata_contig329:7699..8626+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig329.8821.1 ID=mRNA_H-paniculata_contig329.8821.1|Name=mRNA_H-paniculata_contig329.8821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=928bp|location=Sequence derived from alignment at H-paniculata_contig329:7699..8626+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGACGAGGACGAGGACGATGTCTAAACCTTCCAAATTTCCGCAGTCACC
GGAATCTCGGGAGACTGCGGCGGAATGTTTGCGAGAGGATGCCTCGAAGA
GCCGCCGCCAGCGCTTAAGGTTATTTTGCTTCGGCAGCGGGCGCTTGTTT
GGGGCTGCCATGCAGAGGTGGGAGGATATGCGCTAATACGTTCATTTTGT
AGAGTTTTATTGTATGGCTTGCATTAGTCAATGTGTTATTAACAGAAGGT
CAAAACGGACCGAGACAGGGCCATTTTTTTGTTGGTATTTTCGGCATTTA
TCGCGCGGCGGTCACATCAAATTTCCTGCGTGTGTATCCTCGAGAAGAAT
ATCTCTTTCCCTACAGTAACGCGGCTGCAGTTCTCAATAGTTGATGCCTC
CTGAAACTCTGTAGAGTGCCTTTTTTGTATCGTGTTGCCGGCGAGAGGAG
CCAAACCTTGCACCAGTAGTGGCGCACTCTGTGGCCTATGAAACGGTTGT
TTAGTGCTGACGGCAATTCAAACGCCAGCAGAGTGGGATAGCTAGTTTCC
TTATGTCGGGCTTGTCTCTCTGGATGGGATGTACTCCAATACATTTGGTG
CCCGACCTAACACAAAATCATGTAATATCACAATTGACTCTCGAAGTGGT
TTCTTGCCCTTGGTCACCCCAGGTATGCCCTCAAGGGTCAGGGCAATGGG
CAGGGGTTCCTGCGAATTTCCCTTAAACCCGACCTGCACAGCCTGGACCG
TGTGTTTACGGGGGAATGCTTGAGCGACGAGGAGGAACGGTGACCGCAGC
AGTCGCAACGACCAACCCCTCAAGCAGGACAGATCAGAGTCAGAAAAAGA
GCAATGAACGATACGAGAGTCCCGTTTGCCGCCTATGGTGCGCATGTCAA
GTTGACCAGGCACTGTACACTAGACTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig329:7699..8626+

>mRNA_H-paniculata_contig329.8821.1 ID=mRNA_H-paniculata_contig329.8821.1|Name=mRNA_H-paniculata_contig329.8821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig329:7699..8626+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTAAACCTTCCAAATTTCCGCAGTCACCGGAATCTCGGGAGACTGC
GGCGGAATGTTTGCGAGAGGATGCCTCGAAGAGCCGCCGCCAGCGCTTAA
GGTTATTTTGCTTCGGCAGCGGGCGCTTGTTTGGGGCTGCCATGCAGAGA
TGTCTAAACCTTCCAAATTTCCGCAGTCACCGGAATCTCGGGAGACTGCG
GCGGAATGTTTGCGAGAGGATGCCTCGAAGAGCCGCCGCCAGCGCTTAAG
GTTATTTTGCTTCGGCAGCGGGCGCTTGTTTGGGGCTGCCATGCAGAGGT
ATGCCCTCAAGGGTCAGGGCAATGGGCAGGGGTTCCTGCGAATTTCCCTT
AAACCCGACCTGCACAGCCTGGACCGTGTGTTTACGGGGGAATGCTTGAG
CGACGAGGAGGAACGGTGAGTATGCCCTCAAGGGTCAGGGCAATGGGCAG
GGGTTCCTGCGAATTTCCCTTAAACCCGACCTGCACAGCCTGGACCGTGT
GTTTACGGGGGAATGCTTGAGCGACGAGGAGGAACGGTGA
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