mRNA_H-paniculata_contig3287.8816.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3287.8816.1
Unique NamemRNA_H-paniculata_contig3287.8816.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3287.8816.1 vs. uniprot
Match: D8LD68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD68_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 3.690e-9
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 2 
Query:    5 GAADARVVNTSLTTDLRALNLFTRPV--HQIATVNVNGTSTIVANYADSNGSVLLSALSYPSVAAMTYVS 208
            GAA ARVV ++LTT+ R  N+FTRPV    +AT   NGT+T++A Y D +G+ + S+LS+PSVAAM Y S
Sbjct:    4 GAAVARVVPSTLTTNPREFNIFTRPVLVTNLATTG-NGTATVMAEYVDDSGANVPSSLSFPSVAAMAYAS 72
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BLAST of mRNA_H-paniculata_contig3287.8816.1 vs. uniprot
Match: A0A6H5K3S3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3S3_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.790e-8
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:    5 GAADARVVNTSLTTDLRALNLFTRPV--HQIATVNVNGTSTIVANYADSNGSVLLSALSYPSVAAMTYVS 208
            GAA ARVV ++L T+ R  N+FTRPV    +AT   NGT+T++A Y D +G+ + S+LS+PSVAAM Y S
Sbjct:  161 GAAVARVVPSTLVTNPREFNIFTRPVLVTNLATTG-NGTATVMAEYVDDSGANVPSSLSFPSVAAMAYAS 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3287.8816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD68_ECTSI3.690e-954.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3S3_9PHAE1.790e-852.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3287contigH-paniculata_contig3287:5911..6597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size214
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930013.624274-CDS-H-paniculata_contig3287:5910..59911622930013.624274-CDS-H-paniculata_contig3287:5910..5991Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3287 5911..5991 -
1691481110.3377497-CDS-H-paniculata_contig3287:5910..59911691481110.3377497-CDS-H-paniculata_contig3287:5910..5991Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3287 5911..5991 -
1622930013.6393337-CDS-H-paniculata_contig3287:6465..65971622930013.6393337-CDS-H-paniculata_contig3287:6465..6597Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3287 6466..6597 -
1691481110.3485498-CDS-H-paniculata_contig3287:6465..65971691481110.3485498-CDS-H-paniculata_contig3287:6465..6597Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3287 6466..6597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3287.8816.1prot_H-paniculata_contig3287.8816.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3287 5911..6597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3287.8816.1

>prot_H-paniculata_contig3287.8816.1 ID=prot_H-paniculata_contig3287.8816.1|Name=mRNA_H-paniculata_contig3287.8816.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
RWCRGRQSGQHQPHDGPTSTEFIHASGAPDSHSQCQRHFYHRCQLRGLER
VRSPERPVLSLCGSHDVREH*
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mRNA from alignment at H-paniculata_contig3287:5911..6597-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3287.8816.1 ID=mRNA_H-paniculata_contig3287.8816.1|Name=mRNA_H-paniculata_contig3287.8816.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=687bp|location=Sequence derived from alignment at H-paniculata_contig3287:5911..6597- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTGGTGCCGCGGACGCCAGAGTGGTCAACACCAGCCTCACGACGGACC
TACGAGCACTGAATTTATTCACGCGTCCGGTGCACCAGATAGCCACAGTC
AATGTCAACGGCACTTCTACCATCGTTGCCAAGTGGGTCAGGAGGAGGGA
CTGGGCTGAGGGCGCAGGGAGTAGGGAGTAGGGCAGGATAGAACCCCCCC
CCCTCCATCCCCCTCGAGAATAATTGATTTCCTCGTCAAATTTGTATCTG
ATTGTTTGTGTTATGTTCTTGTCATGCTGGGGTTGTGTGATGTCGTAAAG
TAAAATGACTTTAAGGAGGGAGGTGAGATGGGATTCAGCAAGTGGACAAA
TCAATTTGATTGGAGGAGAACGGAATGTAACGGTATCAATCACTTGTGTC
TGTTTCGTACTTGAAGGACTGCAGTATCGAGACGTTTTTCACCTCTGCTG
ACTACCATCACGTACAATCTGTATGTAGAATGCGATGTGGCCTCTGTGTA
ACCCTCCACCCCTGATGCCTCTCCTCCGTCGGCCCGTTCTACTGCTGGCC
GGTGTGACCGTTATCCCTACCCTCGATATTGGAACATGCCATCGACAACA
TTGAAGCTACGCGGACTCGAACGGGTCCGTTCTCCTGAGCGCCCTGTCCT
ATCCCTCTGTGGCAGCCATGACGTACGTGAGCACTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3287:5911..6597-

>mRNA_H-paniculata_contig3287.8816.1 ID=mRNA_H-paniculata_contig3287.8816.1|Name=mRNA_H-paniculata_contig3287.8816.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig3287:5911..6597- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTGGTGCCGCGGACGCCAGAGTGGTCAACACCAGCCTCACGACGGACC
TACGAGCACTGAATTTATTCACGCGTCCGGTGCACCAGATAGCCACAGTC
AATGTCAACGGCACTTCTACCATCGTTGCCAACGCTGGTGCCGCGGACGC
CAGAGTGGTCAACACCAGCCTCACGACGGACCTACGAGCACTGAATTTAT
TCACGCGTCCGGTGCACCAGATAGCCACAGTCAATGTCAACGGCACTTCT
ACCATCGTTGCCAACTACGCGGACTCGAACGGGTCCGTTCTCCTGAGCGC
CCTGTCCTATCCCTCTGTGGCAGCCATGACGTACGTGAGCACTAGCTACG
CGGACTCGAACGGGTCCGTTCTCCTGAGCGCCCTGTCCTATCCCTCTGTG
GCAGCCATGACGTACGTGAGCACTAG
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