mRNA_H-paniculata_contig32805.8802.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32805.8802.1
Unique NamemRNA_H-paniculata_contig32805.8802.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig32805.8802.1 vs. uniprot
Match: K0T2L0_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T2L0_THAOC)

HSP 1 Score: 53.5 bits (127), Expect = 8.750e-6
Identity = 34/87 (39.08%), Postives = 42/87 (48.28%), Query Frame = 1 
Query:   10 DTGATDHMASDETAFEDYTPALPGTMCEIANGIFVPVAGWGRFVLLVSQRGEISQLAMLNRVAHVPKLGRNFISTRRATDTSGKSFI 270
            D+GATDHM  D +AF  Y P + G    + N  FVPV G G  V  ++ +       M+  V HVP LGR   S R      G  FI
Sbjct:  991 DSGATDHMVPDRSAFYSYRP-VHGLRVRMGNNAFVPVVGRGTAVFSLNGKH-----VMIRNVMHVPDLGRPLYSLRAHLLQPGCGFI 1071
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BLAST of mRNA_H-paniculata_contig32805.8802.1 vs. uniprot
Match: K0R6M9_THAOC (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R6M9_THAOC)

HSP 1 Score: 53.5 bits (127), Expect = 8.860e-6
Identity = 34/87 (39.08%), Postives = 42/87 (48.28%), Query Frame = 1 
Query:   10 DTGATDHMASDETAFEDYTPALPGTMCEIANGIFVPVAGWGRFVLLVSQRGEISQLAMLNRVAHVPKLGRNFISTRRATDTSGKSFI 270
            D+GATDHM  D +AF  Y P + G    + N  FVPV G G  V  ++ +       M+  V HVP LGR   S R      G  FI
Sbjct:  217 DSGATDHMVPDRSAFYSYRP-VHGLRVRMGNNAFVPVVGRGTAVFSLNGKH-----VMIRNVMHVPDLGRPLYSLRAHLLQPGCGFI 297
[Close]
BLAST of mRNA_H-paniculata_contig32805.8802.1 vs. uniprot
Match: K0S446_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S446_THAOC)

HSP 1 Score: 52.0 bits (123), Expect = 2.720e-5
Identity = 33/87 (37.93%), Postives = 41/87 (47.13%), Query Frame = 1 
Query:   10 DTGATDHMASDETAFEDYTPALPGTMCEIANGIFVPVAGWGRFVLLVSQRGEISQLAMLNRVAHVPKLGRNFISTRRATDTSGKSFI 270
            D+GATDHM  D +AF  Y P + G    + N  FVPV G G  V  ++ +       M+    HVP LGR   S R      G  FI
Sbjct:  126 DSGATDHMVPDRSAFYSYRP-VHGLRVRMGNNAFVPVVGRGTAVFSLNGKH-----VMIRNAMHVPDLGRPLYSLRAHLLQPGCGFI 206
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32805.8802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
K0T2L0_THAOC8.750e-639.08Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
K0R6M9_THAOC8.860e-639.08Integrase catalytic domain-containing protein (Fra... [more]
K0S446_THAOC2.720e-537.93Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32805contigH-paniculata_contig32805:1486..1842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930011.8900204-UTR-H-paniculata_contig32805:1485..15151622930011.8900204-UTR-H-paniculata_contig32805:1485..1515Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32805 1486..1515 +
1691481109.7632694-UTR-H-paniculata_contig32805:1485..15151691481109.7632694-UTR-H-paniculata_contig32805:1485..1515Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32805 1486..1515 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930011.9113774-CDS-H-paniculata_contig32805:1515..18421622930011.9113774-CDS-H-paniculata_contig32805:1515..1842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32805 1516..1842 +
1691481109.7731955-CDS-H-paniculata_contig32805:1515..18421691481109.7731955-CDS-H-paniculata_contig32805:1515..1842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32805 1516..1842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32805.8802.1prot_H-paniculata_contig32805.8802.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32805 1516..1842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32805.8802.1

>prot_H-paniculata_contig32805.8802.1 ID=prot_H-paniculata_contig32805.8802.1|Name=mRNA_H-paniculata_contig32805.8802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MASDETAFEDYTPALPGTMCEIANGIFVPVAGWGRFVLLVSQRGEISQLA
MLNRVAHVPKLGRNFISTRRATDTSGKSFIYSANKAYLGLGEEESLIFNM
SSSSGLYEV
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mRNA from alignment at H-paniculata_contig32805:1486..1842+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32805.8802.1 ID=mRNA_H-paniculata_contig32805.8802.1|Name=mRNA_H-paniculata_contig32805.8802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=357bp|location=Sequence derived from alignment at H-paniculata_contig32805:1486..1842+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGAACTCAGATACCGGCGCGACAGACCACATGGCGTCGGATGAGACTGC
GTTCGAGGACTACACTCCAGCGCTCCCGGGGACCATGTGTGAAATCGCCA
ACGGGATATTCGTGCCCGTTGCGGGGTGGGGACGCTTTGTGCTTCTAGTA
AGTCAACGGGGGGAAATTTCACAGTTAGCAATGTTAAACAGGGTTGCCCA
CGTACCCAAACTCGGACGTAATTTTATCTCCACACGCCGAGCAACAGATA
CATCGGGTAAATCGTTCATATACAGTGCCAACAAAGCATACCTCGGGCTA
GGGGAGGAGGAGAGCCTTATCTTCAACATGTCATCATCTTCAGGGCTGTA
TGAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig32805:1486..1842+

>mRNA_H-paniculata_contig32805.8802.1 ID=mRNA_H-paniculata_contig32805.8802.1|Name=mRNA_H-paniculata_contig32805.8802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig32805:1486..1842+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGTCGGATGAGACTGCGTTCGAGGACTACACTCCAGCGCTCCCGGG
GACCATGTGTGAAATCGCCAACGGGATATTCGTGCCCGTTGCGGGGTGGG
GACGCTTTGTGCTTCTAGTAAGTCAACGGGGGGAAATTTCACAGTTAGCA
ATGTTAAACAGGGTTGCCCACGTACCCAAACTCGGACGTAATTTTATCTC
CACACGCCGAGCAACAGATACATCGGGTAAATCGTTCATATACAGTGCCA
ACAAAGCATACCTCGGGCTAGGGGAGGAGGAGAGCCTTATCTTCAACATG
TCATCATCTTCAGGGCTGTATGAGGTGATGGCGTCGGATGAGACTGCGTT
CGAGGACTACACTCCAGCGCTCCCGGGGACCATGTGTGAAATCGCCAACG
GGATATTCGTGCCCGTTGCGGGGTGGGGACGCTTTGTGCTTCTAGTAAGT
CAACGGGGGGAAATTTCACAGTTAGCAATGTTAAACAGGGTTGCCCACGT
ACCCAAACTCGGACGTAATTTTATCTCCACACGCCGAGCAACAGATACAT
CGGGTAAATCGTTCATATACAGTGCCAACAAAGCATACCTCGGGCTAGGG
GAGGAGGAGAGCCTTATCTTCAACATGTCATCATCTTCAGGGCTGTATGA
GGTG
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