mRNA_H-paniculata_contig328.8798.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig328.8798.1 vs. uniprot
Match: A0A6H5KI22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI22_9PHAE) HSP 1 Score: 437 bits (1123), Expect = 7.440e-141 Identity = 273/569 (47.98%), Postives = 342/569 (60.11%), Query Frame = 2
Query: 479 ARGDSLPEIFRSSEVVQIYHIQATAMLYEQGGLNHDMSFALTAVAFNSLERPEVKVSMAYYPTNMTISLLPVISEDGRELHWENQEASMGYVLDIDQAYWTGTSYMGETTGAFFSSAVEFSLAYHQDHPRYQPFSVYEDYPGRAFVTASSCDEYVWEVLSAAQERGVRLVPAVMPRKYKIVIYSQTEPEVITLGAQRDGDGDQVEEDTTPPGGDSTGGRGSSSTAVDNGNSTVDSSDRA--------------VGN--------------SGTASIVESSSSGAGTGGQGEADG------------------DST---DSVDSASGVNATRT-GAGEVGDGVRRRALLRGEGSL--SSADDAAADATAVVPSARTAIYPANEWGAILDRRFEMERGTSEEDGPSEAADGGSESENAVASTGDERGAEAGDNDDDADLEPVEAGMGT----AQTDDDWEQVVGYYQSLKLCLQERKYSYVTSLKDFARNFDCLDDVAFISKGPHEYYKVNLTSTKLDQITEPEDLPEVPRSEVGFTWVDISLVVWIVSILACGVHGMLWQGEVVQHWMKA 2017
A G ++ +FRSSEV+Q+YH+QATA LYEQGGLNHDMSF LT VA+ S+ERP+VKVS+AY+PTNMTISLLPVISEDGREL W++Q AS+ YV+ ++QAYW SYMGETTGAFFS AVEFSL YH+ HPRYQPFSVYEDYPGR F+TAS CDE+VW +LSAAQ RGVRL+PA++P+K+KIVIYS ++PE+I GDG S GG G + V+ G ++ VG S A + E +G A G D T SV S++G G G G R+ LLRG L S D+A +A E GA+ E+E +EE G + + +E+ A ST + P+EA + T A+ D+W++VVGYYQSL+LCLQERK+S+VTSLKDF R FDCLDDVAFI+ GPHEYYKVN+TSTKLD I+ PE+LPEV R FT VD +L VWI+ I+ACG+HG+LWQ V+QHW+K+
Sbjct: 28 ASGATVGAVFRSSEVLQMYHLQATAELYEQGGLNHDMSFFLTGVAYYSVERPDVKVSIAYHPTNMTISLLPVISEDGRELRWDHQAASVSYVMGVEQAYWNAGSYMGETTGAFFSYAVEFSLEYHRLHPRYQPFSVYEDYPGREFLTASGCDEFVWALLSAAQTRGVRLIPALLPQKHKIVIYSHSKPEIIVFS----GDGSSA----------SGGGNGDADEPVEGGAVPGEAGXXXXXXXXXXXXXXXXEVGXXXXXXXXXXXXXXXSDAAPVREEE--------EGHASGXXXXXXXXXXXXXXXPSVDETRNNSSVSSSTGQEGQEEDGNGSSAGGEERQRLLRGRTLLWGSPGSDSAGNA--------------GEAGALDREAGEVEDEGTEEPGVTGVDE--AEATGAPLST----------------VSPMEAAVQTRAPAAEPTDEWQEVVGYYQSLQLCLQERKFSFVTSLKDFVRYFDCLDDVAFIAIGPHEYYKVNITSTKLDHISLPEELPEVKRRYESFTGVDTALAVWILMIIACGIHGVLWQAAVIQHWLKS 542
BLAST of mRNA_H-paniculata_contig328.8798.1 vs. uniprot
Match: D7FTM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM5_ECTSI) HSP 1 Score: 371 bits (952), Expect = 3.780e-114 Identity = 235/562 (41.81%), Postives = 288/562 (51.25%), Query Frame = 2
Query: 479 ARGDSLPEIFRSSEVVQIYHIQATAMLYEQGGLNHDMSFALTAVAFNSLERPEVKVSMAYYPTNMTISLLPVISEDGRELHWENQEASMGYVLDIDQAYWTGTSYMGETTGAFFSSAVEFSLAYHQDHPRYQPFSVYEDYPGRAFVTASSCDEYVWEVLSAAQERGVRLVPAVMPRKYKIVIYSQTEPEVITLGAQRDGDGDQVEEDTTPPGGDSTGGRGSSSTAVDNGNSTVDSSDRAVGNSGTASIVESSSSGAGTGGQGEADGDSTDSVDSASGVNATRTGAGEVGDGVRRRALLRGEGSLSSADDAAADATAVVPSARTAIYPANEWGAILDRRFEMERGTSEEDGPSEAADGGSESENAVASTGDERGAEAGDNDDDADLEPVEAGMGTAQTDDDWEQVVGYYQSLKLCLQERKYSYVTSLKDFARNFDCLDDVAFISKGPHEYYKVNLTSTKLDQITEPEDLPEVPRSEVGFTWVDISLVVWIVSILACGVHGMLWQGEVVQHWMKA--STYKSDEEILVSEPGLPDSRPASLTRKITTEYLRLGNVLLGKSSGEF 2158
A G ++ E+FRSSEV+Q+YH+QATA LYEQGGLNHDMSF LT VAF S+ERP+VKVS+AY+PTNMTISLLPVISEDGREL W++Q AS+ YV+ +DQAYW SYMGETTGAFFS AVEFSL +H+ HPRYQPFSVYEDYPG A E + QE G EPE +E T PG AS+ E+ ++GA LS+ P+E A V+ A+ D+W++VVGYYQSL+LCLQERK+S+VTSLKDF R FDCLDDVAFI+ GPHEYYKVN+TSTKLD I+ PE+LPEV R FT VD +L VWI+ I+ACG+HG+LWQ V+QHW+K+ + +E + S+ RP SLTRKITTEYLR+G +LLGK+ +F
Sbjct: 28 ASGATVGEVFRSSEVLQMYHLQATAQLYEQGGLNHDMSFFLTGVAFYSVERPDVKVSIAYHPTNMTISLLPVISEDGRELRWDHQAASVSYVMGVDQAYWNAGSYMGETTGAFFSYAVEFSLEHHRLHPRYQPFSVYEDYPGSA-----------GEAGALDQEAG--------------------EPE---------------DEGTEVPG--------------------------------VASVDEAEATGA----------------------------------------------PLSTVS------------------------------------------PTEMA--------------------------------VQTHAPAAEPTDEWQEVVGYYQSLQLCLQERKFSFVTSLKDFVRYFDCLDDVAFIAIGPHEYYKVNITSTKLDHISLPEELPEVKRRYESFTQVDTALAVWILMIIACGIHGVLWQAAVIQHWLKSYGNAQVEEEPLDGSDDSAEPQRPPSLTRKITTEYLRVGQLLLGKAEDDF 391
BLAST of mRNA_H-paniculata_contig328.8798.1 vs. uniprot
Match: A0A835ZL91_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL91_9STRA) HSP 1 Score: 204 bits (520), Expect = 5.300e-53 Identity = 98/221 (44.34%), Postives = 140/221 (63.35%), Query Frame = 2
Query: 488 DSLPEIFRSSEVVQIYHIQATAMLYEQGGLNHDMSFALTAVAFNSLERPEVKVSMAYYPTNMTISLLPVISEDGRELHWENQEASMGYVLDIDQA-----------------------YWTGTSYMGETTGAFFSSAVEFSLAYHQDHPRYQPFSVYEDYPGRAFVTASSCDEYVWEVLSAAQERGVRLVPAVMPRKYKIVIYSQTEPEVITLGAQRDGDG 1081
D+L + F +EVVQ+YH+ A LYEQGGLNH ++F LTA+AF S+E +V + Y P+NMTISL+P+IS+DG + W + AS Y DID YW+ SY+ TTG+ FS+AV+ + YHQ++P YQPFSVY+ YPGR V ASSCDE+VW ++ AA +GV++ P+++P+K KI++Y+ +P +I + DG G
Sbjct: 35 DTLSDFFGGAEVVQMYHLGAIDTLYEQGGLNHALNFRLTALAFKSMETESSQVVLCYQPSNMTISLVPIISDDGLSVTWSHLGASAVYTKDIDXXXXXXXXXXXXXXXXXXXXXXXXXYWSSASYLASTTGSMFSAAVQLAAKYHQENPHYQPFSVYQKYPGRQLVAASSCDEFVWVLVEAANSKGVQVTPSILPKKIKIIVYADNKPVLIDIDDPSDGGG 255
BLAST of mRNA_H-paniculata_contig328.8798.1 vs. uniprot
Match: A0A7S2V1C8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1C8_9STRA) HSP 1 Score: 110 bits (276), Expect = 3.300e-23 Identity = 58/137 (42.34%), Postives = 80/137 (58.39%), Query Frame = 2
Query: 662 PTNMTISLLPVISE--DGRE---LHWENQEASMGYVLDIDQAYWTGTSYMGETTGAFFSSAVEFSLAYHQDHPRYQPFSVYEDYPGRAFVTASSCDEYVWEVLSAAQERGVRLVPAVMPRKYKIVIYSQTEPEVITL 1057
P ++TIS+LP I E DG + L W N AS+ Y DID W +YMG G+ F ++++L Y H YQPFSVY+ YPG ++ A SCDE+ W++ + L P V+P+K KI++YS EPEV L
Sbjct: 2 PVDLTISMLPEIQEKEDGSQDATLVWHNA-ASIYYESDIDSTVWDSITYMGTMGGSTFRYLLDYALDYGVKHTFYQPFSVYDAYPGHLYIPAISCDEFTWKLFEKLANLQITLNPVVVPKKVKIILYSPCEPEVYAL 137 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig328.8798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig328.8798.1 >prot_H-paniculata_contig328.8798.1 ID=prot_H-paniculata_contig328.8798.1|Name=mRNA_H-paniculata_contig328.8798.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=725bp MGRCEAINRRQWKLGILHPRPTCVLTNILWLILMVSVYSAVTGLPIAGSEback to top mRNA from alignment at H-paniculata_contig328:15265..25140- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig328.8798.1 ID=mRNA_H-paniculata_contig328.8798.1|Name=mRNA_H-paniculata_contig328.8798.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9876bp|location=Sequence derived from alignment at H-paniculata_contig328:15265..25140- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig328:15265..25140- >mRNA_H-paniculata_contig328.8798.1 ID=mRNA_H-paniculata_contig328.8798.1|Name=mRNA_H-paniculata_contig328.8798.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4350bp|location=Sequence derived from alignment at H-paniculata_contig328:15265..25140- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |