mRNA_H-paniculata_contig32745.8788.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32745.8788.1
Unique NamemRNA_H-paniculata_contig32745.8788.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig32745.8788.1 vs. uniprot
Match: A0A6H5JAY4_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAY4_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.440e-27
Identity = 63/124 (50.81%), Postives = 87/124 (70.16%), Query Frame = 1 
Query:    1 NHHSAQPYASKITSQVIADVANGRAVVFDQRRACEINYLRISPVGVVEN-KFPIVHDLSFPRNDPDRFSSVNADTDFARAPQVELGHVIKDVLLRIMYLRQKRKPSARIVISKMDVSEAYRQIP 369
            NH SA  +  +IT +V++DV  GRA+VFD R   EI  +R+SP+GV++  KF I+HDL+F    P R +SVN DTDF +AP+  LGHV+ D+L R++YLRQ    S  I+I ++DV EA+RQIP
Sbjct:  679 NHPSALLHRDRITDKVVSDVILGRALVFDVRFIREILGVRVSPLGVIDKPKFRIIHDLTFTSGVPIR-TSVNHDTDFDQAPECLLGHVLSDILKRVLYLRQVHGVSLEILICRIDVKEAFRQIP 801
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BLAST of mRNA_H-paniculata_contig32745.8788.1 vs. uniprot
Match: A0A835YZC0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZC0_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.390e-10
Identity = 48/113 (42.48%), Postives = 62/113 (54.87%), Query Frame = 1 
Query:   43 QVIADVANGRAVVFDQR--RACEINYLRISPVGVVEN---KFPIVHDLSFPRNDPDRFSSVNADTDFARAPQVELGHVIKDVLLRIMYLRQKRKPSARIVISKMDVSEAYRQI 366
            +V+ D+A GR +V      R      L I+PV VV+    KF +VHDLS   +      SVN  T F  AP V  GH+ + +L RI  LRQ   P  RI+ISKMDV  A+RQ+
Sbjct:   64 KVLEDIALGRCIVMHAAIARMYFSTRLHINPVFVVDEGAAKFRVVHDLSALLHG----ESVNNTTVFEEAPVVGCGHIFEAMLYRIWSLRQAW-PRKRILISKMDVKSAFRQL 171
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BLAST of mRNA_H-paniculata_contig32745.8788.1 vs. uniprot
Match: A0A836CKZ7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKZ7_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.650e-9
Identity = 41/87 (47.13%), Postives = 51/87 (58.62%), Query Frame = 1 
Query:  115 LRISPVGVVEN---KFPIVHDLSFPRNDPDRFSSVNADTDFARAPQVELGHVIKDVLLRIMYLRQKRKPSARIVISKMDVSEAYRQI 366
            L I+PV VV+     F +VHDLS   +      SVN  T F  AP VE GH+ + +L RI  LRQ   P  RI+ISKMDV  A+RQ+
Sbjct:    7 LHINPVFVVDEGAANFRVVHDLSALLHG----ESVNNTTVFEEAPVVECGHIFEAMLYRIWSLRQAW-PRKRILISKMDVKSAFRQL 88
[Close]
BLAST of mRNA_H-paniculata_contig32745.8788.1 vs. uniprot
Match: A0A836CCV7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCV7_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 9.580e-8
Identity = 47/113 (41.59%), Postives = 61/113 (53.98%), Query Frame = 1 
Query:   43 QVIADVANGRAVVFDQR--RACEINYLRISPVGVVEN---KFPIVHDLSFPRNDPDRFSSVNADTDFARAPQVELGHVIKDVLLRIMYLRQKRKPSARIVISKMDVSEAYRQI 366
            +V+  +A GR +V      R      L I+PV VV+    KF +VHDLS   +     S  N  T F  AP VE GH+ + +L RI  LRQ   P  RI+ISKMDV  A+RQ+
Sbjct:  381 KVLNYIALGRCIVMHAAVVRMYFSTRLHINPVFVVDEGAAKFRVVHDLSALLHGE---SVDNNTTVFEDAPVVECGHIFEAMLYRIWSLRQAW-PRKRILISKMDVKSAFRQL 489
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32745.8788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JAY4_9PHAE1.440e-2750.81C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A835YZC0_9STRA3.390e-1042.48Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CKZ7_9STRA2.650e-947.13Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A836CCV7_9STRA9.580e-841.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32745contigH-paniculata_contig32745:1597..1965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930009.9027193-CDS-H-paniculata_contig32745:1596..19651622930009.9027193-CDS-H-paniculata_contig32745:1596..1965Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32745 1597..1965 -
1691481108.921292-CDS-H-paniculata_contig32745:1596..19651691481108.921292-CDS-H-paniculata_contig32745:1596..1965Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32745 1597..1965 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32745.8788.1prot_H-paniculata_contig32745.8788.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32745 1597..1965 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32745.8788.1

>prot_H-paniculata_contig32745.8788.1 ID=prot_H-paniculata_contig32745.8788.1|Name=mRNA_H-paniculata_contig32745.8788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
NHHSAQPYASKITSQVIADVANGRAVVFDQRRACEINYLRISPVGVVENK
FPIVHDLSFPRNDPDRFSSVNADTDFARAPQVELGHVIKDVLLRIMYLRQ
KRKPSARIVISKMDVSEAYRQIP
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mRNA from alignment at H-paniculata_contig32745:1597..1965-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32745.8788.1 ID=mRNA_H-paniculata_contig32745.8788.1|Name=mRNA_H-paniculata_contig32745.8788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=369bp|location=Sequence derived from alignment at H-paniculata_contig32745:1597..1965- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCATCATAGCGCGCAACCGTACGCTTCTAAGATAACCTCTCAAGTGAT
AGCGGATGTCGCCAACGGCAGAGCCGTAGTGTTTGACCAACGGCGTGCAT
GCGAAATTAACTACCTGCGCATATCCCCTGTAGGAGTGGTCGAGAACAAA
TTTCCTATTGTACATGACCTGTCTTTCCCACGAAACGACCCGGATCGTTT
CTCAAGTGTGAATGCGGATACTGATTTTGCACGTGCCCCACAAGTTGAAC
TTGGTCATGTCATTAAAGACGTCTTGTTGCGTATCATGTACTTGCGGCAA
AAGCGTAAGCCAAGCGCTCGTATCGTAATCAGTAAGATGGATGTCAGCGA
AGCATACAGGCAAATCCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig32745:1597..1965-

>mRNA_H-paniculata_contig32745.8788.1 ID=mRNA_H-paniculata_contig32745.8788.1|Name=mRNA_H-paniculata_contig32745.8788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig32745:1597..1965- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCATCATAGCGCGCAACCGTACGCTTCTAAGATAACCTCTCAAGTGAT
AGCGGATGTCGCCAACGGCAGAGCCGTAGTGTTTGACCAACGGCGTGCAT
GCGAAATTAACTACCTGCGCATATCCCCTGTAGGAGTGGTCGAGAACAAA
TTTCCTATTGTACATGACCTGTCTTTCCCACGAAACGACCCGGATCGTTT
CTCAAGTGTGAATGCGGATACTGATTTTGCACGTGCCCCACAAGTTGAAC
TTGGTCATGTCATTAAAGACGTCTTGTTGCGTATCATGTACTTGCGGCAA
AAGCGTAAGCCAAGCGCTCGTATCGTAATCAGTAAGATGGATGTCAGCGA
AGCATACAGGCAAATCCCAAACCATCATAGCGCGCAACCGTACGCTTCTA
AGATAACCTCTCAAGTGATAGCGGATGTCGCCAACGGCAGAGCCGTAGTG
TTTGACCAACGGCGTGCATGCGAAATTAACTACCTGCGCATATCCCCTGT
AGGAGTGGTCGAGAACAAATTTCCTATTGTACATGACCTGTCTTTCCCAC
GAAACGACCCGGATCGTTTCTCAAGTGTGAATGCGGATACTGATTTTGCA
CGTGCCCCACAAGTTGAACTTGGTCATGTCATTAAAGACGTCTTGTTGCG
TATCATGTACTTGCGGCAAAAGCGTAAGCCAAGCGCTCGTATCGTAATCA
GTAAGATGGATGTCAGCGAAGCATACAGGCAAATCCCA
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