mRNA_H-paniculata_contig32712.8783.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32712.8783.1
Unique NamemRNA_H-paniculata_contig32712.8783.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig32712.8783.1 vs. uniprot
Match: D8LG02_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG02_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 4.150e-43
Identity = 72/117 (61.54%), Postives = 94/117 (80.34%), Query Frame = 1 
Query:   16 QVTAVNPEFTRFEIGWKYTWFLMTLLVMFTPNGVGYLSLLRRRHKDTGEERSYQQKWTAVLLWALLWFDDPFVALTVYTDYAKFFSALFIVSSAVFVVLILLFWLCFLSDLRFMQHR 366
            +VTA+NP+FTRFEI +KY W   T+LVMF+P GVG++S ++R  +DTG  +++ QKWT  LLWAL+WFD+PFV  TVYT +AK FSA +I+S+++FV LILLFWLCFLSDLR MQ  
Sbjct:  151 RVTAINPDFTRFEIAFKYVWLFTTMLVMFSPCGVGFMSAVKRHRRDTGLAKTFHQKWTKALLWALVWFDEPFVWGTVYTGWAKVFSAAYILSASIFVFLILLFWLCFLSDLRCMQSE 267
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BLAST of mRNA_H-paniculata_contig32712.8783.1 vs. uniprot
Match: A0A835YX26_9STRA (Wnt-binding factor required for Wnt secretion-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX26_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 8.130e-15
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = 1 
Query:   16 QVTAVNPEFTRFEIGWKYTWFLMTLLVMFTPNGVGYLSLLRRRHKDTGEERSYQQKWTAVLLWALLWFDDPFVALTVYTDYAKF--FSALFIVSSAVFVVLILLFWLCFLSDLRFMQHR 366
            QV  VN  +T+FE+GWKY + ++T +    P   GY   LR   + T    S+QQKWT  LL  L WF+DPF A  VY++      F+A +++    F+ ++LL+WLC  SD+  +  R
Sbjct:  195 QVWYVNDAYTKFEMGWKYFFVVVTFVAALLPRW-GYYMKLRTTRRSTW---SFQQKWTLTLLIGLFWFNDPFFAARVYSEGGTQLGFTAFYMLCVLAFMSMLLLWWLCVFSDMVLIGAR 309
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BLAST of mRNA_H-paniculata_contig32712.8783.1 vs. uniprot
Match: A0A7S1XTX2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTX2_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.260e-10
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 1 
Query:   13 VQVTAVNPEFTRFEIGWKYTWFLMTLLVMFTPNGVGYL-SLLRRRHKDTGEERSYQQKWTAVLLWALLWFDDPFVALTVYTDYAKFFSALFIVSSAVFVVLILLFWLC 333
            + +  +N E+TRFE+G+KYT+   +LL +  P   GYL SLL         E S+ QKW   L   L++++DPF A ++Y +    FS   +    +F   ++LFWLC
Sbjct:  181 LSIDYINREYTRFELGFKYTFLFFSLLALLLPE-YGYLWSLLA----VPTNEWSFNQKWVLALGVLLVFYNDPFFAASIYKENGLDFSVAHVTFLTIFFCAVMLFWLC 283
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BLAST of mRNA_H-paniculata_contig32712.8783.1 vs. uniprot
Match: A0A7S1G4R3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4R3_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 8.320e-8
Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = 1 
Query:   16 QVTAVNPEFTRFEIGWKYTWFLMTLLVMFTPNGVGYLSLLRRRHKDTGEERSYQQKWTAVLLWALLWFDDPFVALTVYTDYAKFFSALFIVSSAVFVVLILLFWLCFLSDLR 351
            ++T V   +T+FEIG+K  +F++ +++        +  +LR+ H    E RSY+Q+WT VL+  L  F+DP  AL V+       + +  V +  F+  +LLFWLC L  +R
Sbjct:  184 ELTYVFRSYTQFEIGFKAAFFVVAVVL-----AASFHYVLRKLHPRP-ETRSYEQRWTLVLMVLLCGFNDPLFALDVFVPSVAL-AVVSAVMTTTFLSAVLLFWLCVLDVIR 288
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BLAST of mRNA_H-paniculata_contig32712.8783.1 vs. uniprot
Match: D8LKL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKL5_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 2.960e-7
Identity = 40/102 (39.22%), Postives = 54/102 (52.94%), Query Frame = 1 
Query:   25 AVNPEFTRFEIGWKYTWFLMTLLVMFTPNGVGYLSLLRRRHKDTGEERSYQQKWTAVLLWALLWFDDPFVALTVYTDYAKFFSALFIVSSAVFVVLILLFWL 330
            A     + FE+ W YTW  +TLLVMF P    +   LR   + +   R   QKW AVLL  L +F++PF+A  +Y    K     + V+  VFV L+LLF L
Sbjct:  214 AFQDWLSEFELAWYYTWAFVTLLVMFLPPRGFFTVALRDDIRWSKWTRL--QKWAAVLLVGLFFFNNPFLAAQIYGASPKSTFIWYAVAEGVFVSLLLLFLL 313
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32712.8783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LG02_ECTSI4.150e-4361.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YX26_9STRA8.130e-1538.66Wnt-binding factor required for Wnt secretion-doma... [more]
A0A7S1XTX2_9STRA4.260e-1036.11Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1G4R3_9STRA8.320e-833.93Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
D8LKL5_ECTSI2.960e-739.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32712contigH-paniculata_contig32712:295..660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_005110.1
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930009.4102752-CDS-H-paniculata_contig32712:294..6601622930009.4102752-CDS-H-paniculata_contig32712:294..660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32712 295..660 -
1691481108.7183132-CDS-H-paniculata_contig32712:294..6601691481108.7183132-CDS-H-paniculata_contig32712:294..660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32712 295..660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32712.8783.1prot_H-paniculata_contig32712.8783.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32712 295..660 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32712.8783.1

>prot_H-paniculata_contig32712.8783.1 ID=prot_H-paniculata_contig32712.8783.1|Name=mRNA_H-paniculata_contig32712.8783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
IADLVQVTAVNPEFTRFEIGWKYTWFLMTLLVMFTPNGVGYLSLLRRRHK
DTGEERSYQQKWTAVLLWALLWFDDPFVALTVYTDYAKFFSALFIVSSAV
FVVLILLFWLCFLSDLRFMQHR
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mRNA from alignment at H-paniculata_contig32712:295..660-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32712.8783.1 ID=mRNA_H-paniculata_contig32712.8783.1|Name=mRNA_H-paniculata_contig32712.8783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=366bp|location=Sequence derived from alignment at H-paniculata_contig32712:295..660- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGCGGACCTCGTACAGGTGACAGCGGTAAACCCAGAATTCACTCGTTT
TGAGATCGGGTGGAAGTATACGTGGTTTCTGATGACCCTGCTCGTGATGT
TCACGCCTAACGGCGTGGGGTACCTGTCCCTTCTGCGGCGGCGGCACAAG
GACACGGGCGAAGAGCGCTCGTATCAGCAGAAGTGGACGGCCGTGCTGCT
GTGGGCGCTGCTGTGGTTCGATGACCCCTTTGTTGCGCTGACTGTATACA
CGGACTACGCGAAGTTTTTCTCGGCGCTCTTCATCGTGAGCTCGGCCGTG
TTCGTGGTGCTGATCCTTCTATTTTGGCTGTGTTTCCTGAGCGACTTGAG
GTTCATGCAGCATCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig32712:295..660-

>mRNA_H-paniculata_contig32712.8783.1 ID=mRNA_H-paniculata_contig32712.8783.1|Name=mRNA_H-paniculata_contig32712.8783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig32712:295..660- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGCGGACCTCGTACAGGTGACAGCGGTAAACCCAGAATTCACTCGTTT
TGAGATCGGGTGGAAGTATACGTGGTTTCTGATGACCCTGCTCGTGATGT
TCACGCCTAACGGCGTGGGGTACCTGTCCCTTCTGCGGCGGCGGCACAAG
GACACGGGCGAAGAGCGCTCGTATCAGCAGAAGTGGACGGCCGTGCTGCT
GTGGGCGCTGCTGTGGTTCGATGACCCCTTTGTTGCGCTGACTGTATACA
CGGACTACGCGAAGTTTTTCTCGGCGCTCTTCATCGTGAGCTCGGCCGTG
TTCGTGGTGCTGATCCTTCTATTTTGGCTGTGTTTCCTGAGCGACTTGAG
GTTCATGCAGCATCGCATCGCGGACCTCGTACAGGTGACAGCGGTAAACC
CAGAATTCACTCGTTTTGAGATCGGGTGGAAGTATACGTGGTTTCTGATG
ACCCTGCTCGTGATGTTCACGCCTAACGGCGTGGGGTACCTGTCCCTTCT
GCGGCGGCGGCACAAGGACACGGGCGAAGAGCGCTCGTATCAGCAGAAGT
GGACGGCCGTGCTGCTGTGGGCGCTGCTGTGGTTCGATGACCCCTTTGTT
GCGCTGACTGTATACACGGACTACGCGAAGTTTTTCTCGGCGCTCTTCAT
CGTGAGCTCGGCCGTGTTCGTGGTGCTGATCCTTCTATTTTGGCTGTGTT
TCCTGAGCGACTTGAGGTTCATGCAGCATCGC
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