mRNA_H-paniculata_contig32710.8782.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32710.8782.1
Unique NamemRNA_H-paniculata_contig32710.8782.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32710.8782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32710contigH-paniculata_contig32710:158..1692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size369
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930009.3354676-CDS-H-paniculata_contig32710:157..4211622930009.3354676-CDS-H-paniculata_contig32710:157..421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32710 158..421 -
1691481108.700488-CDS-H-paniculata_contig32710:157..4211691481108.700488-CDS-H-paniculata_contig32710:157..421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32710 158..421 -
1622930009.3605251-CDS-H-paniculata_contig32710:1587..16921622930009.3605251-CDS-H-paniculata_contig32710:1587..1692Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32710 1588..1692 -
1691481108.7105794-CDS-H-paniculata_contig32710:1587..16921691481108.7105794-CDS-H-paniculata_contig32710:1587..1692Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32710 1588..1692 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32710.8782.1prot_H-paniculata_contig32710.8782.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32710 158..1692 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32710.8782.1

>prot_H-paniculata_contig32710.8782.1 ID=prot_H-paniculata_contig32710.8782.1|Name=mRNA_H-paniculata_contig32710.8782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
AAAAAASEAAPRLRGSEVLDRARAPYCRLTVANKQVGKTRPVAQSAGAGA
GASPAYAVPGGDNGRSDGQKIYENFLFRVSCACRTADYLVLEVYDRAGGL
AAGGDPLLGHCRVPLYRTPARW*
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mRNA from alignment at H-paniculata_contig32710:158..1692-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32710.8782.1 ID=mRNA_H-paniculata_contig32710.8782.1|Name=mRNA_H-paniculata_contig32710.8782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1535bp|location=Sequence derived from alignment at H-paniculata_contig32710:158..1692- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGCGGCGGCGGCGGCTTCCGAGGCCGCACCCCGGCTGCGGGGATCAGA
GGTTCTGGATCGCGCAAGGGCGCCGTACTGCAGGCTGACCGTCGCCAACA
AACAGGTGAATCCTAAGTTCAATTTTTTTTTAATAAAGTTTAGCACCGCC
GATATGCAAAGCCTCGTTGAAGCCTATCACTGACCGCTGCAAGGGTCGTG
TGCTCAGACGCCGTACTGCAGACTGGTGTTGCCAAGTTCTACCCTCTAGT
ATCTATCTACTTGTAATCCTATCGTTGTCAATACTGTAGCTTTCCTTTTC
TTTCCACCCCGGAATATGCAACCACTGTTAACACATCTCGTAAGTGCTGT
GAGGGGAGAAGCTTAATCCCACGACTAGGTATCAAGTACAAAGTCCCGAT
TTAGATCCCCGAAGAACTCAGGTTAATGATCACGTCGGTCTCCCCTCGGT
TTTAAGCTCAAAAACCGAGGAAATTGTGGGGTAGCCGTAGTACGGGACTT
GCCCGTTTTGGCATAAATATAATACTGTAGCTTAGCTCCAGATATGCCAG
GAACCTTTTTTGAGTGCTTTTGCGCGGGTTTACTGCCCTGCTGTACATCC
TGGCGGTTGCCGGCAGCAAGGTGAGAGGTGTATTGTTCACAGGAGAACCC
TTCAACACATTTCTACTCTGACACAATTGGGACTCGGTCCGAAGCTGGGA
ATGTAACACGTCGGTCCGTTCCTTGTATTAATGCGGGACTTCGGGGGGGC
AGCACCAATCCCACTCTCTCCTTAATTCTGGAAATGACGGGGAATACTAC
TCTCAACAGAGTGTTCTCTCTTTATCTCCTTGAGGTATTTAATTTTGACG
CGTACTAACTCCCCCTTATTGGTCATGATCCAAATTGTGTTGATGAGTGT
AAACCACTAAAGGTTGAAGTCAACGGCATTGCTTACCTCAATATGGCTAC
AATGGAGTGTTATTATGTGAGGTTCAGAGCTATGGTTCAACTGACTGTCA
GTTGATTTACGAATAACACCCCCCCTCCTACCACCCCCTTCCCCCCCTCG
GAATCCTGTACTGTAGTCACGAGCTACCAATCAGATGGATTTTGCTAAAC
CTGTCCTATCGACCACGGGGTGCACGGTGTCATGGGATGGATTGTACTTT
ATAATTGAAAAAGAAGAAAAACTTCCTATATTTTGAGCATATAGCTGAGC
GAGTAGTAGCCAAACCAAAAAGCTTATGCCTGTCTTCCACGCAAAATCAT
GGATGATGACCGTATTTACAGGTAGGCAAGACCCGCCCGGTTGCCCAGTC
GGCGGGGGCGGGGGCGGGGGCATCGCCTGCCTATGCTGTCCCTGGGGGGG
ATAACGGCCGCAGTGACGGCCAGAAAATTTATGAGAACTTTCTGTTTCGG
GTTTCATGCGCGTGTCGGACAGCCGACTACCTTGTCCTAGAGGTGTACGA
CCGCGCTGGGGGGCTGGCTGCCGGGGGAGACCCTTTGCTGGGGCACTGCC
GAGTGCCTCTGTATAGAACACCTGCGCGATGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig32710:158..1692-

>mRNA_H-paniculata_contig32710.8782.1 ID=mRNA_H-paniculata_contig32710.8782.1|Name=mRNA_H-paniculata_contig32710.8782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig32710:158..1692- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGCGGCGGCGGCGGCTTCCGAGGCCGCACCCCGGCTGCGGGGATCAGA
GGTTCTGGATCGCGCAAGGGCGCCGTACTGCAGGCTGACCGTCGCCAACA
AACAGGCGGCGGCGGCGGCGGCTTCCGAGGCCGCACCCCGGCTGCGGGGA
TCAGAGGTTCTGGATCGCGCAAGGGCGCCGTACTGCAGGCTGACCGTCGC
CAACAAACAGGTAGGCAAGACCCGCCCGGTTGCCCAGTCGGCGGGGGCGG
GGGCGGGGGCATCGCCTGCCTATGCTGTCCCTGGGGGGGATAACGGCCGC
AGTGACGGCCAGAAAATTTATGAGAACTTTCTGTTTCGGGTTTCATGCGC
GTGTCGGACAGCCGACTACCTTGTCCTAGAGGTGTACGACCGCGCTGGGG
GGCTGGCTGCCGGGGGAGACCCTTTGCTGGGGCACTGCCGAGTGCCTCTG
TATAGAACACCTGCGCGATGGTGAGTAGGCAAGACCCGCCCGGTTGCCCA
GTCGGCGGGGGCGGGGGCGGGGGCATCGCCTGCCTATGCTGTCCCTGGGG
GGGATAACGGCCGCAGTGACGGCCAGAAAATTTATGAGAACTTTCTGTTT
CGGGTTTCATGCGCGTGTCGGACAGCCGACTACCTTGTCCTAGAGGTGTA
CGACCGCGCTGGGGGGCTGGCTGCCGGGGGAGACCCTTTGCTGGGGCACT
GCCGAGTGCCTCTGTATAGAACACCTGCGCGATGGTGA
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