mRNA_H-paniculata_contig3271.8781.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3271.8781.1
Unique NamemRNA_H-paniculata_contig3271.8781.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3271.8781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3271contigH-paniculata_contig3271:11704..12042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size339
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930009.2808166-UTR-H-paniculata_contig3271:11703..117151622930009.2808166-UTR-H-paniculata_contig3271:11703..11715Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3271 11704..11715 +
1691481108.6805732-UTR-H-paniculata_contig3271:11703..117151691481108.6805732-UTR-H-paniculata_contig3271:11703..11715Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3271 11704..11715 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930009.2956173-CDS-H-paniculata_contig3271:11715..120421622930009.2956173-CDS-H-paniculata_contig3271:11715..12042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3271 11716..12042 +
1691481108.6901455-CDS-H-paniculata_contig3271:11715..120421691481108.6901455-CDS-H-paniculata_contig3271:11715..12042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3271 11716..12042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3271.8781.1prot_H-paniculata_contig3271.8781.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3271 11716..12042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3271.8781.1

>prot_H-paniculata_contig3271.8781.1 ID=prot_H-paniculata_contig3271.8781.1|Name=mRNA_H-paniculata_contig3271.8781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MMHRRGPIQPATVQEKKMKAKPEDHGRSPMSRSRRRKRLPAAAAAATVVM
LTFLPPLTTSFVLQPSSMLLGQALRCVGARQSPWFHCSGEPPARERFLRS
SRRVSRHRL
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mRNA from alignment at H-paniculata_contig3271:11704..12042+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3271.8781.1 ID=mRNA_H-paniculata_contig3271.8781.1|Name=mRNA_H-paniculata_contig3271.8781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at H-paniculata_contig3271:11704..12042+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTGCTACATCATGATGCACCGTCGCGGACCCATCCAGCCTGCTACAGT
ACAGGAAAAGAAGATGAAAGCCAAGCCTGAAGACCATGGTCGGTCCCCCA
TGTCTCGAAGTAGGAGAAGAAAACGTTTGCCTGCAGCAGCAGCAGCAGCA
ACAGTTGTGATGCTGACGTTCCTCCCTCCTCTAACAACGTCCTTTGTCCT
ACAGCCAAGTTCGATGCTCTTGGGGCAAGCACTCAGGTGTGTGGGCGCAA
GGCAATCACCATGGTTCCACTGCTCGGGAGAGCCCCCAGCAAGGGAAAGG
TTTCTTAGGTCAAGTCGTCGCGTCAGTCGGCATCGATTG
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Coding sequence (CDS) from alignment at H-paniculata_contig3271:11704..12042+

>mRNA_H-paniculata_contig3271.8781.1 ID=mRNA_H-paniculata_contig3271.8781.1|Name=mRNA_H-paniculata_contig3271.8781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig3271:11704..12042+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCACCGTCGCGGACCCATCCAGCCTGCTACAGTACAGGAAAAGAA
GATGAAAGCCAAGCCTGAAGACCATGGTCGGTCCCCCATGTCTCGAAGTA
GGAGAAGAAAACGTTTGCCTGCAGCAGCAGCAGCAGCAACAGTTGTGATG
CTGACGTTCCTCCCTCCTCTAACAACGTCCTTTGTCCTACAGCCAAGTTC
GATGCTCTTGGGGCAAGCACTCAGGTGTGTGGGCGCAAGGCAATCACCAT
GGTTCCACTGCTCGGGAGAGCCCCCAGCAAGGGAAAGGTTTCTTAGGTCA
AGTCGTCGCGTCAGTCGGCATCGATTGATGATGCACCGTCGCGGACCCAT
CCAGCCTGCTACAGTACAGGAAAAGAAGATGAAAGCCAAGCCTGAAGACC
ATGGTCGGTCCCCCATGTCTCGAAGTAGGAGAAGAAAACGTTTGCCTGCA
GCAGCAGCAGCAGCAACAGTTGTGATGCTGACGTTCCTCCCTCCTCTAAC
AACGTCCTTTGTCCTACAGCCAAGTTCGATGCTCTTGGGGCAAGCACTCA
GGTGTGTGGGCGCAAGGCAATCACCATGGTTCCACTGCTCGGGAGAGCCC
CCAGCAAGGGAAAGGTTTCTTAGGTCAAGTCGTCGCGTCAGTCGGCATCG
ATTG
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