mRNA_H-paniculata_contig3271.8780.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3271.8780.1
Unique NamemRNA_H-paniculata_contig3271.8780.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3271.8780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3271contigH-paniculata_contig3271:4264..4597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size187
Cds size186
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930008.9730127-CDS-H-paniculata_contig3271:4263..43991622930008.9730127-CDS-H-paniculata_contig3271:4263..4399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3271 4264..4399 +
1691481108.661238-CDS-H-paniculata_contig3271:4263..43991691481108.661238-CDS-H-paniculata_contig3271:4263..4399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3271 4264..4399 +
1622930009.1166878-CDS-H-paniculata_contig3271:4547..45971622930009.1166878-CDS-H-paniculata_contig3271:4547..4597Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3271 4548..4597 +
1691481108.6711788-CDS-H-paniculata_contig3271:4547..45971691481108.6711788-CDS-H-paniculata_contig3271:4547..4597Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3271 4548..4597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3271.8780.1prot_H-paniculata_contig3271.8780.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3271 4264..4597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3271.8780.1

>prot_H-paniculata_contig3271.8780.1 ID=prot_H-paniculata_contig3271.8780.1|Name=mRNA_H-paniculata_contig3271.8780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
MGTRKTPHLTLKTNAGKPRSSCNSGREHVCEAWPNKPGSLCLVYRDHANS
KMKAAVRTTMIN
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mRNA from alignment at H-paniculata_contig3271:4264..4597+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3271.8780.1 ID=mRNA_H-paniculata_contig3271.8780.1|Name=mRNA_H-paniculata_contig3271.8780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=334bp|location=Sequence derived from alignment at H-paniculata_contig3271:4264..4597+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGACGAGGAAAACGCCTCATCTAACCCTCAAGACCAATGCGGGCAA
GCCGCGAAGCAGTTGCAACAGTGGCAGGGAGCATGTCTGCGAGGCTTGGC
CGAACAAGCCGGGGTCACTTTGTCTGGTGTATCGAGGTGAACCCACTCTA
TATCCGTTATCAAGAAGGGCACAGAATGTGAAGTTGTTCGACTTGGGAGC
ATTGCCATGTGTATTACTGGAGCCGCCGAATTGCTCAGTTATATGCAACA
CGAAAGTGTGATCATTTTCGTGTGTCGGTGACAGATCATGCCAACAGCAA
GATGAAAGCCGCCGTGAGGACCACCATGATAAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig3271:4264..4597+

>mRNA_H-paniculata_contig3271.8780.1 ID=mRNA_H-paniculata_contig3271.8780.1|Name=mRNA_H-paniculata_contig3271.8780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig3271:4264..4597+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGACGAGGAAAACGCCTCATCTAACCCTCAAGACCAATGCGGGCAA
GCCGCGAAGCAGTTGCAACAGTGGCAGGGAGCATGTCTGCGAGGCTTGGC
CGAACAAGCCGGGGTCACTTTGTCTGGTGTATCGAGATGGGGACGAGGAA
AACGCCTCATCTAACCCTCAAGACCAATGCGGGCAAGCCGCGAAGCAGTT
GCAACAGTGGCAGGGAGCATGTCTGCGAGGCTTGGCCGAACAAGCCGGGG
TCACTTTGTCTGGTGTATCGAGATCATGCCAACAGCAAGATGAAAGCCGC
CGTGAGGACCACCATGATAAATATCATGCCAACAGCAAGATGAAAGCCGC
CGTGAGGACCACCATGATAAAT
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