mRNA_H-paniculata_contig32660.8773.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32660.8773.1
Unique NamemRNA_H-paniculata_contig32660.8773.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig32660.8773.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 253 bits (647), Expect = 9.280e-79
Identity = 127/277 (45.85%), Postives = 166/277 (59.93%), Query Frame = 1
Query:    1 YLLVLADDLSGYVWLEPALECTARVATETILQWCVVFGPPRVFVSGTARHFNNRFLSLPADALGTEHHFSLVNSAWSNGPVERMNRDVINTFKVVLNEANRAVREWPAAVPMV*WTLNTAHRARLGTTPYQLMFGGAQRTVFLLHTDNNGDEWRVEDLDVSHERMQGLVQDWVKSQEAARREVLQRVRRYRERKREADGAGHLLNFEVGDYVLTARARKLGSTPKLVGPWTGPWRVVRGGSAHVYKFQDIVTGVTMDVHAVRMRLCADKSLDVGMDV 831
            YLLV+ DDLS + W+EP   CTAR+  + +L WC   G P V+VS TA HF N  +     ALG E  F++ NS WSNG  ERM R+V+ T K VL E  R +R+W   VP V W LNTA+R R  +TPY +MFG A RT F     ++G+ W ++ LD +  + Q  VQ+ +++Q    +++ Q+V   R R+R A   G L  F VGDYV+ AR R+ G TPKL   WTGPWRVV     HVY  Q+IV G   DVH  R+R  AD  L+V  D+
Sbjct:   67 YLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREVVRTMKAVLQERRRNLRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAPRTSFSTLASSSGEAWNIDTLDATKLKQQ--VQNVIQTQAVLHKQIQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDL 341          
BLAST of mRNA_H-paniculata_contig32660.8773.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 254 bits (650), Expect = 1.350e-73
Identity = 128/277 (46.21%), Postives = 166/277 (59.93%), Query Frame = 1
Query:    1 YLLVLADDLSGYVWLEPALECTARVATETILQWCVVFGPPRVFVSGTARHFNNRFLSLPADALGTEHHFSLVNSAWSNGPVERMNRDVINTFKVVLNEANRAVREWPAAVPMV*WTLNTAHRARLGTTPYQLMFGGAQRTVFLLHTDNNGDEWRVEDLDVSHERMQGLVQDWVKSQEAARREVLQRVRRYRERKREADGAGHLLNFEVGDYVLTARARKLGSTPKLVGPWTGPWRVVRGGSAHVYKFQDIVTGVTMDVHAVRMRLCADKSLDVGMDV 831
            YLLV+ DDLS + W+EP   CTAR+  + +L WC   G P V+VS TA HF N  +     ALG E  F++ NS WSNG  ERM R+++ T K VL E  R VR+W   VP V W LNTA+R R  +TPY +MFG A RT F     ++G+ W ++ LD +  + Q  VQ+ +++Q    ++V Q+V   R R+R A   G L  F VGDYV+ AR R+ G TPKL   WTGPWRVV     HVY  Q+IV G   DVH  R+R  AD  L+V  D+
Sbjct: 1290 YLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAPRTSFSTLASSSGEAWNIDTLDATKLKQQ--VQNVIQTQAVLHKQVQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDL 1564          
BLAST of mRNA_H-paniculata_contig32660.8773.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 2.280e-55
Identity = 110/277 (39.71%), Postives = 153/277 (55.23%), Query Frame = 1
Query:    1 YLLVLADDLSGYVWLEPALECTARVATETILQWCVVFGPPRVFVSGTARHFNNRFLSLPADALGTEHHFSLVNSAWSNGPVERMNRDVINTFKVVLNEANRAVREWPAAVPMV*WTLNTAHRARLGTTPYQLMFGGAQRTVFLLHTDNNGDEWRVEDLDVSHERMQGLVQDWVKSQEAARREVLQRVRRYRERKREADGAGHLLNFEVGDYVLTARARKLGSTPKLVGPWTGPWRVVRGGSAHVYKFQDIVTGVTMDVHAVRMRLCADKSLDVGMDV 831
            Y+LV+ DD+S +VWLEP   CTA +  + +L WC + G P V+VS TA HF N  ++    ALG + +FS+ NS WSNG  ERM R+V+ T K ++ E     R+W   VP V W LNTA R R G+TPY +MFG A RT       + G EW+V+ LD    R++  VQ  V++Q    +EVL +V+  R + R +   G L +F VGDYV+ A  R                        HVY  Q+IV+G   DVH  R+R  AD +L++  ++
Sbjct: 1392 YILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMMAALETALGVDRNFSVANSPWSNGTCERMMREVVRTLKAMIQEERGRTRDWVDLVPAVQWALNTAFRERYGSTPYHVMFGRAPRTALSTLASSTGAEWKVDVLDEKSLRLK--VQHVVEAQRHLHKEVLDKVQASRSKHRASARVGSLPDFVVGDYVIVAAER-----------------------LHVYGVQNIVSGEVRDVHVARLRFYADAALEITAEL 1643          
BLAST of mRNA_H-paniculata_contig32660.8773.1 vs. uniprot
Match: UPI001E1D317D (uncharacterized protein LOC123544435 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D317D)

HSP 1 Score: 143 bits (360), Expect = 2.280e-36
Identity = 94/282 (33.33%), Postives = 138/282 (48.94%), Query Frame = 1
Query:    1 YLLVLADDLSGYVWLEPALECTARVATETILQWCVVFGPPRVFVSGTARHFNNRFLSLPADALGTEHHFSLVNSAWSNGPVERMNRDVINTFKVVLNEANRAVREWPAAVPMV*WTLNTAHRARLGTTPYQLMFGG--AQRTVFLLHTDNNGDEWRVEDLDVSHE-RMQGLVQ--DWVKSQEAARREVLQRVRRYRERKREADGAGHLLNFEVGDYVLTARARKLGSTPKLVGPWTGPWRVVRGGSAHVYKFQDIVTGVTMDVHAVRMRLCADKSLDVGMDV 831
            YLL++ DDLSGYVWL P+         + +  W   FG   ++VS    HF N+ +      L ++HHF+   S W+NG VER  R+V+   + +L+E      EWPA   +V   LN +     G T     F G  A   +  + +  NG+   + ++++     +Q L Q  + +  +E+   E  +R  R R    +A       NFE+GD+VL AR R+  +  KL   W GP R+V   S HVY+ QDI       VHA R+R   D SLDV  D+
Sbjct:   57 YLLIIKDDLSGYVWLIPSKAADTATVVDALTLWFASFGVALIWVSDRGSHFKNKVMDGVRRVLKSQHHFTTAYSPWANGTVERACREVLRASRALLSEFRLRQTEWPAVYKIVQAILNNSPATHRGNTAPLTAFTGRSADSPLRCIVSPTNGETRALSEIELQQILNVQELCQSVEKIHKRESTSSEARRRAARARIDSAQAP------NFEIGDFVLVAR-REQRTGEKLALRWRGPKRIVGTLSDHVYEVQDIEANTIAPVHATRLRFYNDASLDVSADL 331          
BLAST of mRNA_H-paniculata_contig32660.8773.1 vs. uniprot
Match: A0A6G0KWJ8_9STRA (Integrase catalytic domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6G0KWJ8_9STRA)

HSP 1 Score: 129 bits (323), Expect = 6.060e-30
Identity = 98/279 (35.13%), Postives = 140/279 (50.18%), Query Frame = 1
Query:    1 YLLVLADDLSGYVWLEPALECTARVATETILQWCVVFGPPRVFVSGTARHFNNRFLSLPADALGTEHHFSLVNSAWSNGPVERMNRDVINTFKVVLNEANRAVREWPAAVPMV*WTLNTAHRARLGTTPYQLMFGGAQRTVFL--LHTDNNGDEWRVEDLDVSHERMQGL---VQDWVKSQEAARREVLQRVRRYRERKREADGAGHLLNFEVGDYVLTARA-RKLGSTPKLVGPWTGPWRVVRGGSAHVYKFQDIVTGVTMDVHAVRMRLCADKSLDV 819
            YLLVL D  + Y  L  A    + V TE +L W   FG P  +VS    HF N  ++     L ++  F+L  S W NG VER NRD++   + ++ E   + ++W   VPMV  +LN      LG      +F G Q    L   +    G+   V D D   E ++ L   + D  K  E  +RE  +R+ + R+R        +L+NF VGD+VL +R   K G+  KL   W GP+RVVR  S H ++ Q +V G   DVHA R+++ AD SL+V
Sbjct:  398 YLLVLKDHATHYCELVVADTADSSVVTEALLDWHSRFGIPPEWVSDNGTHFKNEVVAELCRRLKSKQSFTLAYSPWINGSVERANRDILQVMRAMILEYIISYKDWVYLVPMVQSSLNHTAVPSLGNRAPVELFTGLQCPTPLKEFYLPETGELQTVPDSDAIDEFLEKLRSSIHDMHKDVED-QREKQRRLNKKRQR------GENLVNFAVGDFVLRSRIDEKRGN--KLQVTWIGPYRVVRADS-HSFRVQHLVAGDEQDVHASRLKMYADDSLEV 666          
BLAST of mRNA_H-paniculata_contig32660.8773.1 vs. uniprot
Match: UPI001E1DBC25 (uncharacterized protein LOC123544734 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DBC25)

HSP 1 Score: 121 bits (304), Expect = 3.590e-28
Identity = 92/295 (31.19%), Postives = 138/295 (46.78%), Query Frame = 1
Query:    1 YLLVLADDLSGYVWLEPALECTARVATETILQWCVVFGPPRVFVSGTARHFNNRFLSLPADALGTEHHFSLVNSAWSNGPVERMNRDVINTFKVVLNEANRAVREWPAAVPMV*WTLNTA---HRARL-------GTTP----YQLMFGGAQRTVFL--LHTDN--NGDEWRVEDLDVSHERMQGLVQDWVKSQEAARREVLQRVRRYRERKREADGAGHLLNFEVGDYVLTARARKLGSTPKLVGPWTGPWRVVRGGSAHVYKFQDIVTGVTMDVHAVRMRLCADKSLDVGMDV 831
            YLL++ DDLSGY+WL PA    +    + +  W   FG   ++VS    HF N+ +     AL  +HHF+   S W+NG VER  R+V+   + +L+E       WP    +V   LN A   HR  +       G TP      L++  A +++ L  + T    N +  R   LD  H +          + EAA       VRR   RK +   A    NF++GD+VL A+ R      KL   W GP+R+V   S  V++ +D++T     +H  R+R   D SL+V  ++
Sbjct:   72 YLLLIKDDLSGYLWLVPAKAADSASTVDALTLWFATFGVAHIWVSDQGSHFKNQVMGSLRKALRAQHHFTTAYSPWANGTVERACREVLRAGRALLSELKLHPTLWPTVARIVQSVLNNAPSPHRGNIAPFTAFTGRTPDSPIRSLVYTVADKSLSLPAIRTQQLINIENLRSS-LDAIHHQ----------AHEAAT------VRRANSRKHKYMSAQQA-NFDIGDFVLVAK-RDFSGGEKLSLRWRGPYRIVSTLSHFVFEVEDLLTKKVTPIHCARLRFYHDPSLEVTAEL 347          
BLAST of mRNA_H-paniculata_contig32660.8773.1 vs. uniprot
Match: A0A6A3H2P3_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3H2P3_9STRA)

HSP 1 Score: 120 bits (301), Expect = 6.170e-28
Identity = 87/277 (31.41%), Postives = 139/277 (50.18%), Query Frame = 1
Query:    1 YLLVLADDLSGYVWLEPALECTARVATETILQWCVVFGPPRVFVSGTARHFNNRFLSLPADALGTEHHFSLVNSAWSNGPVERMNRDVINTFKVVLNEANRAVREWPAAVPMV*WTLNTAHRARLGTTPYQLMFGGAQRTVFLLH---TDNNGDEWRVEDLDVSHERMQGLVQDWVKSQEAARREVLQRVRRYRERKREADGAGHLLNFEVGDYVLTARA-RKLGSTPKLVGPWTGPWRVVRGGSAHVYKFQDIVTGVTMDVHAVRMRLCADKSLDV 819
            YLL+L D  + Y  L  A    + V TE +L W   FG P  +VS    HF N  ++     L T   F+   S W NG +ER+NRD++   + ++       ++W   VPM+   LN +    LG      +F G Q    L+     D +G    ++D+  S +++   + +   S +    +V  R  + R   ++ +   +L+NF  GDYVL +R   K G+  KL   W GP+RVVR  S H ++ + +VTG  +DVHA R+++ AD+SL++
Sbjct:   10 YLLMLKDHATHYCELVVADTADSVVTTEALLAWYSRFGLPPEWVSDQGTHFKNEVIAELCRRLKTHQPFTPTYSPWVNGSIERVNRDILQVVRTMILAYKIGYKDWAYLVPMIQSNLNHSPVPSLGNRAPVELFTGLQCPTPLMEFYLPDGDG----LQDVPAS-DQIDNYLANLRSSLQMMHCDVENRRLKQRPLNKKRERGENLVNFAEGDYVLRSRVDEKHGN--KLQVTWVGPYRVVRADS-HSFRVEHLVTGEQLDVHASRLKMYADESLNI 278          
BLAST of mRNA_H-paniculata_contig32660.8773.1 vs. uniprot
Match: A0A6A4FIQ4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FIQ4_9STRA)

HSP 1 Score: 122 bits (307), Expect = 6.430e-28
Identity = 83/283 (29.33%), Postives = 136/283 (48.06%), Query Frame = 1
Query:    1 YLLVLADDLSGYVWLEPALECTARVATETILQWCVVFGPPRVFVSGTARHFNNRFLSLPADALGTEHHFSLVNSAWSNGPVERMNRDVINTFKVVLNEANRAVREWPAAVPMV*WTLN-TAHRARLGTTPYQLMFGGA----QRTVFLLHTDNNGDEWRVEDLDVSHE-RMQGLVQDWVKSQEAARREVLQRVRRYRERKREADGAGHLLNFEVGDYVLTARARKLGSTPKLVGPWTGPWRVVRGGSAHVYKFQDIVTGVTMDVHAVRMRLCADKSLDVGMDV 831
            Y+LVL DD S +  L    +  A  A   IL+W + FGPP+V +S TA HF N  ++     + +   F++    W NG VER+NRD++  F+V++ E      +W    P+V   LN TA  +    +P ++  G A     +++ +     +     +ED+  S   ++  L Q   +  +   +             R A      +NF +GD+VL +R      T KL   W GP+RVV G + + +  + ++TG T +VH  R+++ AD S DV  +V
Sbjct:  262 YILVLKDDYSHFCELVACKQADAATAAHAILEWNMRFGPPQVLISDTATHFKNELIAELTHRMQSRQSFTVAYCPWINGSVERINRDILQVFRVMILEFRLRQEQWVDLFPLVQANLNQTAVPSLANLSPIEVFTGLACPSPLQSIVVQTAKGSAQVVSIEDIPASTMVKVDALRQHLHRMHQKLEQAXXXXXXXXXXXXRSATP----VNFHIGDFVLWSRIESRLKTNKLSVKWVGPYRVV-GANPNSFTVEHLLTGATREVHDSRLKMYADSSFDVTEEV 539          
BLAST of mRNA_H-paniculata_contig32660.8773.1 vs. uniprot
Match: A0A6A3MFU3_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3MFU3_9STRA)

HSP 1 Score: 119 bits (297), Expect = 6.840e-27
Identity = 87/273 (31.87%), Postives = 135/273 (49.45%), Query Frame = 1
Query:    1 YLLVLADDLSGYVWLEPALECTARVATETILQWCVVFGPPRVFVSGTARHFNNRFLSLPADALGTEHHFSLVNSAWSNGPVERMNRDVINTFKVVLNEANRAVREWPAAVPMV*WTLNTAHRARLGTTPYQLMFGGAQRTVFLLHTDNNGDEWRVEDLDVSHERMQGLVQDWVKSQEAARREVLQRVRRYRERKREADGAGHLLNFEVGDYVLTARARKLGSTPKLVGPWTGPWRVVRGGSAHVYKFQDIVTGVTMDVHAVRMRLCADKSLDV 819
            YLLV  D  + Y  L  A    +RV TE +L W   FG P  +VS    HF N  ++  +  L T+  F+     W NG VER+NRD++   + ++     + ++W   VPMV  +LN      LG      +F G Q     L      ++  ++ +  S E + G +    +S +A RR V  +  + R   R+ +   +L+NF VG++VL +   +     KL   W GP+RV R  + H ++ Q +VTG   DVHA R+++ AD SL+V
Sbjct:  202 YLLVFKDHATHYCELVVADTADSRVTTEALLAWHSRFGIPPQWVSDQGTHFKNDVVAELSRRLRTQQEFTPAYCPWINGSVERVNRDILQVIRAMILAYKVSYKDWVYLVPMVQASLNHTAMPSLGNYSPTELFTGLQNPT-PLREFYLPEKQELQSVPESEE-IDGYLAQLRESIQAMRRAVEDQRLKQRLLNRKKERGENLVNFTVGNFVLRSWVDEKHDN-KLQVTWVGPYRVTRADT-HSFRVQHLVTGDEADVHASRLKMYADDSLEV 470          
BLAST of mRNA_H-paniculata_contig32660.8773.1 vs. uniprot
Match: A0A6A3EJ81_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3EJ81_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.470e-26
Identity = 91/284 (32.04%), Postives = 138/284 (48.59%), Query Frame = 1
Query:    1 YLLVLADDLSGYVWLEPALECTARVATETILQWCVVFGPPRVFVSGTARHFNNRFLSLPADALGTEHHFSLVNSAWSNGPVERMNRDVINTFKVVLNEANRAVREWPAAVPMV*WTLNTAHRARL-GTTP---YQLMFGGAQ-RTVFLLHTDNNGD-EWRVEDLDVSHERMQGLVQDWVKSQEAARREVLQRVRRYRERKREADGAGHLLNFEVGDYVLTARARKLGSTPKLVGPWTGPWRVVRGGSAHVYKFQDIVTGVTMDV-HAVRMRLCADKSLDVGMDV 831
            Y+LVL D++SGYV L      TA      ++ W   FG    +VS    HF N+ +     ALG +HHF+   + W+NG VE +NR+++   K +L+E    VR+WPA + +V   LN     RL G +P   +  + G  Q R++   H   +   EW  E + V+H     +  D + ++     E  +R  R R  +RE      L  F  GD+VL A A    S  KL   W GP R+VR  + + ++ QDIV    +   HA R++L  D +  +  D+
Sbjct:   10 YVLVLKDNMSGYVELIACPNPTADYVYTGLMDWFKRFGVVLQWVSDQGAHFRNQVIERLQRALGAQHHFTTAYTPWANGTVEVVNRELLRAVKALLSERQLPVRDWPAVLSVVQGALNAMPADRLDGKSPLTAFTALPGAVQLRSILHPHDPVHATVEWVHEQI-VTHLSSVRIALDGLHAEMTDASEKRRRAARERHARREGV---QLQKFNEGDFVLAATATGR-SGHKLALVWRGPKRIVRALNDYTFEVQDIVAPSAVSTRHASRLQLYRDAARGLEEDL 288          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32660.8773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVS6_9PHAE9.280e-7945.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE1.350e-7346.21Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE2.280e-5539.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001E1D317D2.280e-3633.33uncharacterized protein LOC123544435 n=1 Tax=Merce... [more]
A0A6G0KWJ8_9STRA6.060e-3035.13Integrase catalytic domain-containing protein n=6 ... [more]
UPI001E1DBC253.590e-2831.19uncharacterized protein LOC123544734 n=1 Tax=Merce... [more]
A0A6A3H2P3_9STRA6.170e-2831.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A4FIQ4_9STRA6.430e-2829.33Uncharacterized protein n=3 Tax=Phytophthora rubi ... [more]
A0A6A3MFU3_9STRA6.840e-2731.87Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3EJ81_9STRA1.470e-2632.04Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32660contigH-paniculata_contig32660:8..838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue3.7e-09
Seed eggNOG ortholog67593.Physo136309
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QDQ4@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size831
Cds size435
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930008.0910892-UTR-H-paniculata_contig32660:7..4031622930008.0910892-UTR-H-paniculata_contig32660:7..403Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32660 8..403 +
1691481108.3371255-UTR-H-paniculata_contig32660:7..4031691481108.3371255-UTR-H-paniculata_contig32660:7..403Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32660 8..403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930008.1121345-CDS-H-paniculata_contig32660:403..8381622930008.1121345-CDS-H-paniculata_contig32660:403..838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32660 404..838 +
1691481108.3486993-CDS-H-paniculata_contig32660:403..8381691481108.3486993-CDS-H-paniculata_contig32660:403..838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32660 404..838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32660.8773.1prot_H-paniculata_contig32660.8773.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32660 404..838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32660.8773.1

>prot_H-paniculata_contig32660.8773.1 ID=prot_H-paniculata_contig32660.8773.1|Name=mRNA_H-paniculata_contig32660.8773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp
MFGGAQRTVFLLHTDNNGDEWRVEDLDVSHERMQGLVQDWVKSQEAARRE
VLQRVRRYRERKREADGAGHLLNFEVGDYVLTARARKLGSTPKLVGPWTG
PWRVVRGGSAHVYKFQDIVTGVTMDVHAVRMRLCADKSLDVGMDV
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mRNA from alignment at H-paniculata_contig32660:8..838+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32660.8773.1 ID=mRNA_H-paniculata_contig32660.8773.1|Name=mRNA_H-paniculata_contig32660.8773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=831bp|location=Sequence derived from alignment at H-paniculata_contig32660:8..838+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACTTGCTGGTGCTGGCGGATGACCTTAGCGGCTACGTGTGGCTGGAGCC GGCGCTGGAATGTACCGCTAGAGTGGCGACCGAGACCATTCTGCAGTGGT GCGTGGTGTTCGGCCCTCCGAGGGTGTTCGTCAGCGGCACCGCTCGCCAC TTCAACAACCGCTTCTTGAGTCTGCCGGCGGACGCGCTGGGGACCGAGCA CCATTTCTCCTTGGTCAACTCTGCGTGGTCAAACGGCCCGGTGGAGCGGA TGAACCGCGACGTGATAAACACGTTTAAAGTCGTGCTGAACGAGGCGAAC CGCGCGGTCCGCGAATGGCCGGCGGCGGTGCCGATGGTCTAGTGGACCCT GAACACGGCGCATCGGGCACGGTTGGGTACCACCCCGTACCAGCTCATGT TTGGTGGCGCACAGCGTACCGTGTTCTTGCTACACACAGACAACAACGGT GATGAGTGGAGGGTAGAGGACCTTGATGTGTCGCACGAGCGCATGCAGGG TCTAGTCCAGGACTGGGTCAAGTCTCAGGAGGCGGCGCGACGCGAAGTGT TGCAGCGCGTTCGGCGGTACCGTGAGCGCAAACGGGAGGCGGATGGCGCG GGACACTTGCTGAATTTTGAGGTCGGAGACTATGTCCTGACAGCGCGCGC TCGCAAGCTTGGAAGCACCCCAAAGCTCGTCGGCCCGTGGACCGGCCCAT GGCGAGTGGTCAGGGGTGGCTCCGCGCATGTTTATAAGTTCCAAGACATT GTGACGGGGGTCACCATGGACGTGCATGCAGTTCGGATGCGGCTGTGCGC GGACAAATCACTGGATGTGGGAATGGACGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig32660:8..838+

>mRNA_H-paniculata_contig32660.8773.1 ID=mRNA_H-paniculata_contig32660.8773.1|Name=mRNA_H-paniculata_contig32660.8773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig32660:8..838+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTGGTGGCGCACAGCGTACCGTGTTCTTGCTACACACAGACAACAA
CGGTGATGAGTGGAGGGTAGAGGACCTTGATGTGTCGCACGAGCGCATGC
AGGGTCTAGTCCAGGACTGGGTCAAGTCTCAGGAGGCGGCGCGACGCGAA
GTGTTGCAGCGCGTTCGGCGGTACCGTGAGCGCAAACGGGAGGCGGATGG
CGCGGGACACTTGCTGAATTTTGAGGTCGGAGACTATGTCCTGACAGCGC
GCGCTCGCAAGCTTGGAAGCACCCCAAAGCTCGTCGGCCCGTGGACCGGC
CCATGGCGAGTGGTCAGGGGTGGCTCCGCGCATGTTTATAAGTTCCAAGA
CATTGTGACGGGGGTCACCATGGACGTGCATGCAGTTCGGATGCGGCTGT
GCGCGGACAAATCACTGGATGTGGGAATGGACGTTATGTTTGGTGGCGCA
CAGCGTACCGTGTTCTTGCTACACACAGACAACAACGGTGATGAGTGGAG
GGTAGAGGACCTTGATGTGTCGCACGAGCGCATGCAGGGTCTAGTCCAGG
ACTGGGTCAAGTCTCAGGAGGCGGCGCGACGCGAAGTGTTGCAGCGCGTT
CGGCGGTACCGTGAGCGCAAACGGGAGGCGGATGGCGCGGGACACTTGCT
GAATTTTGAGGTCGGAGACTATGTCCTGACAGCGCGCGCTCGCAAGCTTG
GAAGCACCCCAAAGCTCGTCGGCCCGTGGACCGGCCCATGGCGAGTGGTC
AGGGGTGGCTCCGCGCATGTTTATAAGTTCCAAGACATTGTGACGGGGGT
CACCATGGACGTGCATGCAGTTCGGATGCGGCTGTGCGCGGACAAATCAC
TGGATGTGGGAATGGACGTT
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