mRNA_H-paniculata_contig32660.8773.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig32660.8773.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE) HSP 1 Score: 253 bits (647), Expect = 9.280e-79 Identity = 127/277 (45.85%), Postives = 166/277 (59.93%), Query Frame = 1
Query: 1 YLLVLADDLSGYVWLEPALECTARVATETILQWCVVFGPPRVFVSGTARHFNNRFLSLPADALGTEHHFSLVNSAWSNGPVERMNRDVINTFKVVLNEANRAVREWPAAVPMV*WTLNTAHRARLGTTPYQLMFGGAQRTVFLLHTDNNGDEWRVEDLDVSHERMQGLVQDWVKSQEAARREVLQRVRRYRERKREADGAGHLLNFEVGDYVLTARARKLGSTPKLVGPWTGPWRVVRGGSAHVYKFQDIVTGVTMDVHAVRMRLCADKSLDVGMDV 831
YLLV+ DDLS + W+EP CTAR+ + +L WC G P V+VS TA HF N + ALG E F++ NS WSNG ERM R+V+ T K VL E R +R+W VP V W LNTA+R R +TPY +MFG A RT F ++G+ W ++ LD + + Q VQ+ +++Q +++ Q+V R R+R A G L F VGDYV+ AR R+ G TPKL WTGPWRVV HVY Q+IV G DVH R+R AD L+V D+
Sbjct: 67 YLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREVVRTMKAVLQERRRNLRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAPRTSFSTLASSSGEAWNIDTLDATKLKQQ--VQNVIQTQAVLHKQIQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDL 341
BLAST of mRNA_H-paniculata_contig32660.8773.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 254 bits (650), Expect = 1.350e-73 Identity = 128/277 (46.21%), Postives = 166/277 (59.93%), Query Frame = 1
Query: 1 YLLVLADDLSGYVWLEPALECTARVATETILQWCVVFGPPRVFVSGTARHFNNRFLSLPADALGTEHHFSLVNSAWSNGPVERMNRDVINTFKVVLNEANRAVREWPAAVPMV*WTLNTAHRARLGTTPYQLMFGGAQRTVFLLHTDNNGDEWRVEDLDVSHERMQGLVQDWVKSQEAARREVLQRVRRYRERKREADGAGHLLNFEVGDYVLTARARKLGSTPKLVGPWTGPWRVVRGGSAHVYKFQDIVTGVTMDVHAVRMRLCADKSLDVGMDV 831
YLLV+ DDLS + W+EP CTAR+ + +L WC G P V+VS TA HF N + ALG E F++ NS WSNG ERM R+++ T K VL E R VR+W VP V W LNTA+R R +TPY +MFG A RT F ++G+ W ++ LD + + Q VQ+ +++Q ++V Q+V R R+R A G L F VGDYV+ AR R+ G TPKL WTGPWRVV HVY Q+IV G DVH R+R AD L+V D+
Sbjct: 1290 YLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAPRTSFSTLASSSGEAWNIDTLDATKLKQQ--VQNVIQTQAVLHKQVQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDL 1564
BLAST of mRNA_H-paniculata_contig32660.8773.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 202 bits (514), Expect = 2.280e-55 Identity = 110/277 (39.71%), Postives = 153/277 (55.23%), Query Frame = 1
Query: 1 YLLVLADDLSGYVWLEPALECTARVATETILQWCVVFGPPRVFVSGTARHFNNRFLSLPADALGTEHHFSLVNSAWSNGPVERMNRDVINTFKVVLNEANRAVREWPAAVPMV*WTLNTAHRARLGTTPYQLMFGGAQRTVFLLHTDNNGDEWRVEDLDVSHERMQGLVQDWVKSQEAARREVLQRVRRYRERKREADGAGHLLNFEVGDYVLTARARKLGSTPKLVGPWTGPWRVVRGGSAHVYKFQDIVTGVTMDVHAVRMRLCADKSLDVGMDV 831
Y+LV+ DD+S +VWLEP CTA + + +L WC + G P V+VS TA HF N ++ ALG + +FS+ NS WSNG ERM R+V+ T K ++ E R+W VP V W LNTA R R G+TPY +MFG A RT + G EW+V+ LD R++ VQ V++Q +EVL +V+ R + R + G L +F VGDYV+ A R HVY Q+IV+G DVH R+R AD +L++ ++
Sbjct: 1392 YILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMMAALETALGVDRNFSVANSPWSNGTCERMMREVVRTLKAMIQEERGRTRDWVDLVPAVQWALNTAFRERYGSTPYHVMFGRAPRTALSTLASSTGAEWKVDVLDEKSLRLK--VQHVVEAQRHLHKEVLDKVQASRSKHRASARVGSLPDFVVGDYVIVAAER-----------------------LHVYGVQNIVSGEVRDVHVARLRFYADAALEITAEL 1643
BLAST of mRNA_H-paniculata_contig32660.8773.1 vs. uniprot
Match: UPI001E1D317D (uncharacterized protein LOC123544435 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D317D) HSP 1 Score: 143 bits (360), Expect = 2.280e-36 Identity = 94/282 (33.33%), Postives = 138/282 (48.94%), Query Frame = 1
Query: 1 YLLVLADDLSGYVWLEPALECTARVATETILQWCVVFGPPRVFVSGTARHFNNRFLSLPADALGTEHHFSLVNSAWSNGPVERMNRDVINTFKVVLNEANRAVREWPAAVPMV*WTLNTAHRARLGTTPYQLMFGG--AQRTVFLLHTDNNGDEWRVEDLDVSHE-RMQGLVQ--DWVKSQEAARREVLQRVRRYRERKREADGAGHLLNFEVGDYVLTARARKLGSTPKLVGPWTGPWRVVRGGSAHVYKFQDIVTGVTMDVHAVRMRLCADKSLDVGMDV 831
YLL++ DDLSGYVWL P+ + + W FG ++VS HF N+ + L ++HHF+ S W+NG VER R+V+ + +L+E EWPA +V LN + G T F G A + + + NG+ + ++++ +Q L Q + + +E+ E +R R R +A NFE+GD+VL AR R+ + KL W GP R+V S HVY+ QDI VHA R+R D SLDV D+
Sbjct: 57 YLLIIKDDLSGYVWLIPSKAADTATVVDALTLWFASFGVALIWVSDRGSHFKNKVMDGVRRVLKSQHHFTTAYSPWANGTVERACREVLRASRALLSEFRLRQTEWPAVYKIVQAILNNSPATHRGNTAPLTAFTGRSADSPLRCIVSPTNGETRALSEIELQQILNVQELCQSVEKIHKRESTSSEARRRAARARIDSAQAP------NFEIGDFVLVAR-REQRTGEKLALRWRGPKRIVGTLSDHVYEVQDIEANTIAPVHATRLRFYNDASLDVSADL 331
BLAST of mRNA_H-paniculata_contig32660.8773.1 vs. uniprot
Match: A0A6G0KWJ8_9STRA (Integrase catalytic domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6G0KWJ8_9STRA) HSP 1 Score: 129 bits (323), Expect = 6.060e-30 Identity = 98/279 (35.13%), Postives = 140/279 (50.18%), Query Frame = 1
Query: 1 YLLVLADDLSGYVWLEPALECTARVATETILQWCVVFGPPRVFVSGTARHFNNRFLSLPADALGTEHHFSLVNSAWSNGPVERMNRDVINTFKVVLNEANRAVREWPAAVPMV*WTLNTAHRARLGTTPYQLMFGGAQRTVFL--LHTDNNGDEWRVEDLDVSHERMQGL---VQDWVKSQEAARREVLQRVRRYRERKREADGAGHLLNFEVGDYVLTARA-RKLGSTPKLVGPWTGPWRVVRGGSAHVYKFQDIVTGVTMDVHAVRMRLCADKSLDV 819
YLLVL D + Y L A + V TE +L W FG P +VS HF N ++ L ++ F+L S W NG VER NRD++ + ++ E + ++W VPMV +LN LG +F G Q L + G+ V D D E ++ L + D K E +RE +R+ + R+R +L+NF VGD+VL +R K G+ KL W GP+RVVR S H ++ Q +V G DVHA R+++ AD SL+V
Sbjct: 398 YLLVLKDHATHYCELVVADTADSSVVTEALLDWHSRFGIPPEWVSDNGTHFKNEVVAELCRRLKSKQSFTLAYSPWINGSVERANRDILQVMRAMILEYIISYKDWVYLVPMVQSSLNHTAVPSLGNRAPVELFTGLQCPTPLKEFYLPETGELQTVPDSDAIDEFLEKLRSSIHDMHKDVED-QREKQRRLNKKRQR------GENLVNFAVGDFVLRSRIDEKRGN--KLQVTWIGPYRVVRADS-HSFRVQHLVAGDEQDVHASRLKMYADDSLEV 666
BLAST of mRNA_H-paniculata_contig32660.8773.1 vs. uniprot
Match: UPI001E1DBC25 (uncharacterized protein LOC123544734 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DBC25) HSP 1 Score: 121 bits (304), Expect = 3.590e-28 Identity = 92/295 (31.19%), Postives = 138/295 (46.78%), Query Frame = 1
Query: 1 YLLVLADDLSGYVWLEPALECTARVATETILQWCVVFGPPRVFVSGTARHFNNRFLSLPADALGTEHHFSLVNSAWSNGPVERMNRDVINTFKVVLNEANRAVREWPAAVPMV*WTLNTA---HRARL-------GTTP----YQLMFGGAQRTVFL--LHTDN--NGDEWRVEDLDVSHERMQGLVQDWVKSQEAARREVLQRVRRYRERKREADGAGHLLNFEVGDYVLTARARKLGSTPKLVGPWTGPWRVVRGGSAHVYKFQDIVTGVTMDVHAVRMRLCADKSLDVGMDV 831
YLL++ DDLSGY+WL PA + + + W FG ++VS HF N+ + AL +HHF+ S W+NG VER R+V+ + +L+E WP +V LN A HR + G TP L++ A +++ L + T N + R LD H + + EAA VRR RK + A NF++GD+VL A+ R KL W GP+R+V S V++ +D++T +H R+R D SL+V ++
Sbjct: 72 YLLLIKDDLSGYLWLVPAKAADSASTVDALTLWFATFGVAHIWVSDQGSHFKNQVMGSLRKALRAQHHFTTAYSPWANGTVERACREVLRAGRALLSELKLHPTLWPTVARIVQSVLNNAPSPHRGNIAPFTAFTGRTPDSPIRSLVYTVADKSLSLPAIRTQQLINIENLRSS-LDAIHHQ----------AHEAAT------VRRANSRKHKYMSAQQA-NFDIGDFVLVAK-RDFSGGEKLSLRWRGPYRIVSTLSHFVFEVEDLLTKKVTPIHCARLRFYHDPSLEVTAEL 347
BLAST of mRNA_H-paniculata_contig32660.8773.1 vs. uniprot
Match: A0A6A3H2P3_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3H2P3_9STRA) HSP 1 Score: 120 bits (301), Expect = 6.170e-28 Identity = 87/277 (31.41%), Postives = 139/277 (50.18%), Query Frame = 1
Query: 1 YLLVLADDLSGYVWLEPALECTARVATETILQWCVVFGPPRVFVSGTARHFNNRFLSLPADALGTEHHFSLVNSAWSNGPVERMNRDVINTFKVVLNEANRAVREWPAAVPMV*WTLNTAHRARLGTTPYQLMFGGAQRTVFLLH---TDNNGDEWRVEDLDVSHERMQGLVQDWVKSQEAARREVLQRVRRYRERKREADGAGHLLNFEVGDYVLTARA-RKLGSTPKLVGPWTGPWRVVRGGSAHVYKFQDIVTGVTMDVHAVRMRLCADKSLDV 819
YLL+L D + Y L A + V TE +L W FG P +VS HF N ++ L T F+ S W NG +ER+NRD++ + ++ ++W VPM+ LN + LG +F G Q L+ D +G ++D+ S +++ + + S + +V R + R ++ + +L+NF GDYVL +R K G+ KL W GP+RVVR S H ++ + +VTG +DVHA R+++ AD+SL++
Sbjct: 10 YLLMLKDHATHYCELVVADTADSVVTTEALLAWYSRFGLPPEWVSDQGTHFKNEVIAELCRRLKTHQPFTPTYSPWVNGSIERVNRDILQVVRTMILAYKIGYKDWAYLVPMIQSNLNHSPVPSLGNRAPVELFTGLQCPTPLMEFYLPDGDG----LQDVPAS-DQIDNYLANLRSSLQMMHCDVENRRLKQRPLNKKRERGENLVNFAEGDYVLRSRVDEKHGN--KLQVTWVGPYRVVRADS-HSFRVEHLVTGEQLDVHASRLKMYADESLNI 278
BLAST of mRNA_H-paniculata_contig32660.8773.1 vs. uniprot
Match: A0A6A4FIQ4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FIQ4_9STRA) HSP 1 Score: 122 bits (307), Expect = 6.430e-28 Identity = 83/283 (29.33%), Postives = 136/283 (48.06%), Query Frame = 1
Query: 1 YLLVLADDLSGYVWLEPALECTARVATETILQWCVVFGPPRVFVSGTARHFNNRFLSLPADALGTEHHFSLVNSAWSNGPVERMNRDVINTFKVVLNEANRAVREWPAAVPMV*WTLN-TAHRARLGTTPYQLMFGGA----QRTVFLLHTDNNGDEWRVEDLDVSHE-RMQGLVQDWVKSQEAARREVLQRVRRYRERKREADGAGHLLNFEVGDYVLTARARKLGSTPKLVGPWTGPWRVVRGGSAHVYKFQDIVTGVTMDVHAVRMRLCADKSLDVGMDV 831
Y+LVL DD S + L + A A IL+W + FGPP+V +S TA HF N ++ + + F++ W NG VER+NRD++ F+V++ E +W P+V LN TA + +P ++ G A +++ + + +ED+ S ++ L Q + + + R A +NF +GD+VL +R T KL W GP+RVV G + + + + ++TG T +VH R+++ AD S DV +V
Sbjct: 262 YILVLKDDYSHFCELVACKQADAATAAHAILEWNMRFGPPQVLISDTATHFKNELIAELTHRMQSRQSFTVAYCPWINGSVERINRDILQVFRVMILEFRLRQEQWVDLFPLVQANLNQTAVPSLANLSPIEVFTGLACPSPLQSIVVQTAKGSAQVVSIEDIPASTMVKVDALRQHLHRMHQKLEQAXXXXXXXXXXXXRSATP----VNFHIGDFVLWSRIESRLKTNKLSVKWVGPYRVV-GANPNSFTVEHLLTGATREVHDSRLKMYADSSFDVTEEV 539
BLAST of mRNA_H-paniculata_contig32660.8773.1 vs. uniprot
Match: A0A6A3MFU3_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3MFU3_9STRA) HSP 1 Score: 119 bits (297), Expect = 6.840e-27 Identity = 87/273 (31.87%), Postives = 135/273 (49.45%), Query Frame = 1
Query: 1 YLLVLADDLSGYVWLEPALECTARVATETILQWCVVFGPPRVFVSGTARHFNNRFLSLPADALGTEHHFSLVNSAWSNGPVERMNRDVINTFKVVLNEANRAVREWPAAVPMV*WTLNTAHRARLGTTPYQLMFGGAQRTVFLLHTDNNGDEWRVEDLDVSHERMQGLVQDWVKSQEAARREVLQRVRRYRERKREADGAGHLLNFEVGDYVLTARARKLGSTPKLVGPWTGPWRVVRGGSAHVYKFQDIVTGVTMDVHAVRMRLCADKSLDV 819
YLLV D + Y L A +RV TE +L W FG P +VS HF N ++ + L T+ F+ W NG VER+NRD++ + ++ + ++W VPMV +LN LG +F G Q L ++ ++ + S E + G + +S +A RR V + + R R+ + +L+NF VG++VL + + KL W GP+RV R + H ++ Q +VTG DVHA R+++ AD SL+V
Sbjct: 202 YLLVFKDHATHYCELVVADTADSRVTTEALLAWHSRFGIPPQWVSDQGTHFKNDVVAELSRRLRTQQEFTPAYCPWINGSVERVNRDILQVIRAMILAYKVSYKDWVYLVPMVQASLNHTAMPSLGNYSPTELFTGLQNPT-PLREFYLPEKQELQSVPESEE-IDGYLAQLRESIQAMRRAVEDQRLKQRLLNRKKERGENLVNFTVGNFVLRSWVDEKHDN-KLQVTWVGPYRVTRADT-HSFRVQHLVTGDEADVHASRLKMYADDSLEV 470
BLAST of mRNA_H-paniculata_contig32660.8773.1 vs. uniprot
Match: A0A6A3EJ81_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3EJ81_9STRA) HSP 1 Score: 116 bits (291), Expect = 1.470e-26 Identity = 91/284 (32.04%), Postives = 138/284 (48.59%), Query Frame = 1
Query: 1 YLLVLADDLSGYVWLEPALECTARVATETILQWCVVFGPPRVFVSGTARHFNNRFLSLPADALGTEHHFSLVNSAWSNGPVERMNRDVINTFKVVLNEANRAVREWPAAVPMV*WTLNTAHRARL-GTTP---YQLMFGGAQ-RTVFLLHTDNNGD-EWRVEDLDVSHERMQGLVQDWVKSQEAARREVLQRVRRYRERKREADGAGHLLNFEVGDYVLTARARKLGSTPKLVGPWTGPWRVVRGGSAHVYKFQDIVTGVTMDV-HAVRMRLCADKSLDVGMDV 831
Y+LVL D++SGYV L TA ++ W FG +VS HF N+ + ALG +HHF+ + W+NG VE +NR+++ K +L+E VR+WPA + +V LN RL G +P + + G Q R++ H + EW E + V+H + D + ++ E +R R R +RE L F GD+VL A A S KL W GP R+VR + + ++ QDIV + HA R++L D + + D+
Sbjct: 10 YVLVLKDNMSGYVELIACPNPTADYVYTGLMDWFKRFGVVLQWVSDQGAHFRNQVIERLQRALGAQHHFTTAYTPWANGTVEVVNRELLRAVKALLSERQLPVRDWPAVLSVVQGALNAMPADRLDGKSPLTAFTALPGAVQLRSILHPHDPVHATVEWVHEQI-VTHLSSVRIALDGLHAEMTDASEKRRRAARERHARREGV---QLQKFNEGDFVLAATATGR-SGHKLALVWRGPKRIVRALNDYTFEVQDIVAPSAVSTRHASRLQLYRDAARGLEEDL 288 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32660.8773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig32660.8773.1 >prot_H-paniculata_contig32660.8773.1 ID=prot_H-paniculata_contig32660.8773.1|Name=mRNA_H-paniculata_contig32660.8773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp MFGGAQRTVFLLHTDNNGDEWRVEDLDVSHERMQGLVQDWVKSQEAARREback to top mRNA from alignment at H-paniculata_contig32660:8..838+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig32660.8773.1 ID=mRNA_H-paniculata_contig32660.8773.1|Name=mRNA_H-paniculata_contig32660.8773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=831bp|location=Sequence derived from alignment at H-paniculata_contig32660:8..838+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig32660:8..838+ >mRNA_H-paniculata_contig32660.8773.1 ID=mRNA_H-paniculata_contig32660.8773.1|Name=mRNA_H-paniculata_contig32660.8773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig32660:8..838+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |