mRNA_H-paniculata_contig3265.8771.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3265.8771.1
Unique NamemRNA_H-paniculata_contig3265.8771.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3265.8771.1 vs. uniprot
Match: D8LAV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAV0_ECTSI)

HSP 1 Score: 294 bits (752), Expect = 1.710e-93
Identity = 139/182 (76.37%), Postives = 158/182 (86.81%), Query Frame = 1 
Query:    1 GAKRNKFIIRNPENGDLNQYWYSPATIETIAAEVSEYGSGGTAFLSTPSIFFSLDEDLRSKCKVFDLDTKWAKDPGFVLYDFTKPEDIPHEVRGTFDMVVVDPPFITKEVRGRYAVATELLLRKEGARRVLCSTIGENAEFMEELLGAVPRAFKPSIPHLVYQYSLYTNYESDRLSASNPEI 546
            G KRN+F+++NPENGDLNQYWYS ATI+ I AEV E+GSGGTAFLSTPSI+FSLD DLR+KCKVFDLDTKWAKDPGFVLYD+TKP+DIP  +RGTFDMVVVDPPF+T++V   Y  AT+LLLR  GAR VLCSTI ENA FMEELLGA P  FKPSIP+LVYQYSLY NY+S RL++ NPEI
Sbjct:    5 GGKRNRFLMKNPENGDLNQYWYSKATIDAIVAEVGEFGSGGTAFLSTPSIYFSLDRDLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQVWESYTAATKLLLRPGGARLVLCSTILENAPFMEELLGASPCEFKPSIPNLVYQYSLYVNYDSKRLASCNPEI 186
[Close]
BLAST of mRNA_H-paniculata_contig3265.8771.1 vs. uniprot
Match: A0A835YKM7_9STRA (Putative N6-adenine methyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKM7_9STRA)

HSP 1 Score: 234 bits (597), Expect = 2.010e-70
Identity = 109/183 (59.56%), Postives = 133/183 (72.68%), Query Frame = 1 
Query:    4 AKRNKFIIRNPENGDLNQYWYSPATIETIAAEVSEYGSGGTAFLSTPSIFFSLDEDLRSKCKVFDLDTKWAKDPGFVLYDFTKPEDIPHEVRGTFDMVVVDPPFITKEVRGRYAVATELLLRKEGARRVLCSTIGENAEFMEELLGAVPRAFKPSIPHLVYQYSLYTNYESDRLSASNPEIAE 552
            A +N+F++RNPE GDLNQYWYS  TIE +  EV E+G  GTAFLSTPSI+FS   ++R KCKVFD+DT W KDPGFV +DF K +D+P ++ GTF MVV+DPPFI +EV   YA+AT   L  +   ++L +TI EN E M ELL   P  FKPSIPHLVYQY LYTNY+S  L+  NPEI E
Sbjct:    2 ASKNRFLVRNPEKGDLNQYWYSKGTIEALVLEVVEFGGEGTAFLSTPSIYFSTPAEIRQKCKVFDIDTAWKKDPGFVYFDFNKLDDVPADLHGTFAMVVIDPPFIMREVWEAYAMATAARLLLQPGGKILATTIAENEELMAELLDVKPCVFKPSIPHLVYQYKLYTNYDSPNLNQRNPEIPE 184
[Close]
BLAST of mRNA_H-paniculata_contig3265.8771.1 vs. uniprot
Match: A0A8J8NP72_HALGN (Uncharacterized protein n=2 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NP72_HALGN)

HSP 1 Score: 212 bits (540), Expect = 4.500e-62
Identity = 106/181 (58.56%), Postives = 138/181 (76.24%), Query Frame = 1 
Query:   13 NKFIIRNPENGDLNQYWYSPATIETIAAEVSEYGSGGTAFLSTPSIFFSL-DEDLRSKCKVFDLDTKWAKDPGFVLYDFTKPEDIPHEVRGTFDMVVVDPPFITKEVRGRYAVATELLLRKEGARRVLCSTIGENAEFMEELLGAVPRAFKPSIPHLVYQYSLYTNYESDRLSASNPEIAE 552
            N F+ ++ E  D NQYWYS ATI  +A+E  ++G    AFLSTPSI+FSL ++++++  +VFD DTK+ KDPGFV YDF KPEDIP ++   FDMVV+DPPFIT+EV  +YA A +L+L KEG + +L STI EN  F++ELLGA  RAF+PSIP+LVYQYSLY+NYES+ L A NPEI +
Sbjct:    5 NPFLAKHKEKSDFNQYWYSKATINFMASECEQFGQK-IAFLSTPSIYFSLKNKEIKAASRVFDFDTKFNKDPGFVFYDFNKPEDIPADLHNYFDMVVIDPPFITREVWEKYATAAKLILIKEGGK-ILLSTIDENEGFIDELLGAKRRAFRPSIPNLVYQYSLYSNYESEGLLAKNPEIPD 183
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BLAST of mRNA_H-paniculata_contig3265.8771.1 vs. uniprot
Match: A0A7S1G4D1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4D1_9STRA)

HSP 1 Score: 213 bits (541), Expect = 6.140e-62
Identity = 110/200 (55.00%), Postives = 132/200 (66.00%), Query Frame = 1 
Query:    4 AKRNKFIIRNPENGDLNQYWYSPATIETIAAEVSEYGSGGTAFLSTPSIFFSLDEDLRSKCKVFDLDTKWAKDPGFVLYDFTKPEDIPHEVRGTFDMVVVDPPFITKEVRGRYAVATELLLRKEGAR-----------------RVLCSTIGENAEFMEELLGAVPRAFKPSIPHLVYQYSLYTNYESDRLSASNPEIAE 552
             KRN+F++R  E  DLNQYWYS  +I  +AAEV   G G   F+STPSI+FSL ++ R    VFDLDT+W KDPGFV YDF +PE+ P E+R  FDM+VVDPPFIT+EV  +YA    LL ++                     R L STI ENAE MEELLG  P+AFKPSIP+LVYQY+LY NYES+ LS  NPEI E
Sbjct:    7 VKRNRFLLRTKEKEDLNQYWYSAKSIAAMAAEVVATG-GKACFISTPSIYFSLTKEQREGNYVFDLDTQWEKDPGFVRYDFNEPENFPEELRHAFDMIVVDPPFITREVWEKYATTMRLLAKERSGEVDTGAGGEEEKKDEPPCRFLVSTIAENAEMMEELLGVKPQAFKPSIPNLVYQYNLYANYESEGLSVPNPEIPE 205
[Close]
BLAST of mRNA_H-paniculata_contig3265.8771.1 vs. uniprot
Match: A0A6T7IIE5_BIGNA (Hypothetical protein n=1 Tax=Bigelowiella natans TaxID=227086 RepID=A0A6T7IIE5_BIGNA)

HSP 1 Score: 206 bits (523), Expect = 1.550e-59
Identity = 104/183 (56.83%), Postives = 136/183 (74.32%), Query Frame = 1 
Query:    7 KRNKFIIRNPENGDLNQYWYSPATIETIAAEVSEYGSGGTAFLSTPSIFFSLDE--DLRSKCKVFDLDTKWAKDPGFVLYDFTKPEDIPHEVRGTFDMVVVDPPFITKEVRGRYAVATELLLRKEGARRVLCSTIGENAEFMEELLGAVPRAFKPSIPHLVYQYSLYTNYESDRLSASNPEIA 549
            KRNKF++R  E+GDLNQYWYS  TI+ +  EV E  +   AFLSTPS++FSL +  +LR+  KVFDLD ++ KDPGFV YDF KP++IP E+ G FD VV+DPPFIT+EV   YA A +LLL++EG  ++L ST+ ENA  +++L G +P  F+PSIP LVYQY+ YTNYE+  L  +NPEIA
Sbjct:    8 KRNKFLLRTKEDGDLNQYWYSLNTIDAMVKEVME-NAKVCAFLSTPSVYFSLPKKSELRTNSKVFDLDKRFKKDPGFVEYDFNKPDEIPKEIHGKFDYVVIDPPFITEEVLTLYAKAAKLLLQEEG--KILISTLVENAAIVKKLYGGMPCKFQPSIPKLVYQYNFYTNYEASALKETNPEIA 187
[Close]
BLAST of mRNA_H-paniculata_contig3265.8771.1 vs. uniprot
Match: J9IRF9_9SPIT (N6-adenineMlase domain containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IRF9_9SPIT)

HSP 1 Score: 202 bits (514), Expect = 2.840e-58
Identity = 100/181 (55.25%), Postives = 132/181 (72.93%), Query Frame = 1 
Query:   13 NKFIIRNPENGDLNQYWYSPATIETIAAEVSEYGSGGTAFLSTPSIFFSL-DEDLRSKCKVFDLDTKWAKDPGFVLYDFTKPEDIPHEVRGTFDMVVVDPPFITKEVRGRYAVATELLLRKEGARRVLCSTIGENAEFMEELLGAVPRAFKPSIPHLVYQYSLYTNYESDRLSASNPEIAE 552
            N F+ +N EN DLNQYWYS  TI  +A+E  ++G    AFLSTPS++FSL ++++++  K FD D K+ KDP F+ YDF KPEDIP E+   FDMVV+DPPFIT+EV  +Y  A++ LL  +G  ++L STI EN  F+ ELLGA  R F+PSIP+LVYQYSLY+NY+S+ L+  NPEI E
Sbjct:    5 NPFLAKNKENADLNQYWYSKPTINFLASECEQFGKK-IAFLSTPSVYFSLKNKEIKANSKCFDYDEKFGKDPNFIFYDFNKPEDIPRELEKQFDMVVIDPPFITREVWEKYTEASKFLLADDG--KILLSTIDENEAFILELLGAKRRQFRPSIPNLVYQYSLYSNYDSEGLNNKNPEIPE 182
[Close]
BLAST of mRNA_H-paniculata_contig3265.8771.1 vs. uniprot
Match: A0A7S2BFX1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BFX1_9STRA)

HSP 1 Score: 202 bits (514), Expect = 2.750e-57
Identity = 97/190 (51.05%), Postives = 131/190 (68.95%), Query Frame = 1 
Query:   16 KFIIRNPENG-----DLNQYWYSPATIETIAAEVSEYGSGG--TAFLSTPSIFFSLDEDLRSKCKVFDLDTKWAKDPGFVLYDFTKPEDIPHEVRGTFDMVVVDPPFITKEVRGRYAVATELLLRKEGARRVLCSTIGENAEFMEELLGAVPRAFKPSIPHLVYQYSLYTNYESDRLSASNPEIAESMEE 564
            +F+ +NPE       DLNQYWYS  TIE + AEV  +G      AF+STPS+FFSL  + R +C V D D KW  +PGFV YD+ +PE +P E++GTFDM+V+DPP+IT+EV  +YA+  +LLL   G  RV+ +T+ ENA  M+ELL   P+ F+PS+P+LVYQY LYT+Y S+ L   NPEI E +E+
Sbjct:   60 EFLAKNPEKHTCSGKDLNQYWYSAITIEKMVAEVQAHGGEPLKVAFVSTPSLFFSLTAEQRRECAVLDYDRKWESEPGFVFYDYNEPEAVPEEIKGTFDMLVIDPPYITREVWAQYAITAKLLLAPNG--RVMLTTVAENAPMMKELLDVEPQTFRPSVPNLVYQYCLYTSYPSEGLDCDNPEITEIIEQ 247
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BLAST of mRNA_H-paniculata_contig3265.8771.1 vs. uniprot
Match: A0A6U1KXA3_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A6U1KXA3_9CHLO)

HSP 1 Score: 196 bits (497), Expect = 8.960e-56
Identity = 96/182 (52.75%), Postives = 124/182 (68.13%), Query Frame = 1 
Query:   13 NKFIIRNPENGDLNQYWYSPATIETIAAEVSEYGSGGTAFLSTPSIFFSLD--EDLRSKCKVFDLDTKWAKDPGFVLYDFTKPEDIPHEVRGTFDMVVVDPPFITKEVRGRYAVATELLLRKEGARRVLCSTIGENAEFMEELLGAVPRAFKPSIPHLVYQYSLYTNYESDRLSASNPEIAE 552
            N+F++ + E  D NQYWYS  TI  +  E+    +   AFLSTPSI+FSL   + +R    V DLD +WAK+PGF  YDF KPED+P E  G FD VV+DPPFIT+EV  +YA   +LLL   G  +++ +T+ EN E ++E+LG  P AF+PSIPHLVYQY+LYTNYES+  S  NPEI E
Sbjct:    7 NRFLLTHQEKADFNQYWYSAKTIAAVVEELQLVATK-VAFLSTPSIYFSLKKGDPIRQASWVMDLDQQWAKEPGFFAYDFNKPEDLPGECLGAFDCVVIDPPFITEEVWAKYAATAKLLLSPGG--KIILTTVAENKEMLKEMLGVAPCAFQPSIPHLVYQYNLYTNYESETFSRKNPEIPE 185
[Close]
BLAST of mRNA_H-paniculata_contig3265.8771.1 vs. uniprot
Match: A0A5J4XES2_9CHLO (N6-adenineMlase domain containing n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XES2_9CHLO)

HSP 1 Score: 195 bits (495), Expect = 1.750e-55
Identity = 98/182 (53.85%), Postives = 127/182 (69.78%), Query Frame = 1 
Query:   13 NKFIIRNPENGDLNQYWYSPATIETIAAEVSEYGSGGTAFLSTPSIFFSLDED--LRSKCKVFDLDTKWAKDPGFVLYDFTKPEDIPHEVRGTFDMVVVDPPFITKEVRGRYAVATELLLRKEGARRVLCSTIGENAEFMEELLGAVPRAFKPSIPHLVYQYSLYTNYESDRLSASNPEIAE 552
            N+F+ R+ E  DLNQYWYS ATI+ +  E+ +  S   AFLSTPS++FSL +D  LR    +FDLD +W+ +P FV+YDF  PEDIP  +  TFD +V+DPPFIT EV  +YA A +LLL  EG  R+L STI EN  F+++LLG   + FKPSIPHLVYQY +Y NY S+ LS  NPE+ +
Sbjct:    5 NRFLARHVEKEDLNQYWYSSATIKVLVQELLKV-STRAAFLSTPSLYFSLPKDSQLRKNSALFDLDKQWSSEPNFVVYDFNNPEDIPANIHHTFDCIVIDPPFITHEVWRQYAAAAKLLLAPEG--RILLSTIPENDSFLKKLLGVDMQKFKPSIPHLVYQYCIYVNYSSELLSQPNPEVLD 183
[Close]
BLAST of mRNA_H-paniculata_contig3265.8771.1 vs. uniprot
Match: A0A7S1IZX2_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IZX2_9EUGL)

HSP 1 Score: 195 bits (495), Expect = 3.210e-55
Identity = 98/183 (53.55%), Postives = 124/183 (67.76%), Query Frame = 1 
Query:    7 KRNKFIIRNPENGDLNQYWYSPATIETIAAEVSEYGSGGTAFLSTPSIFFSLDED-LRSKCKVFDLDTKWAKDPGFVLYDFTKPEDIPHEVRGTFDMVVVDPPFITKEVRGRYAVATELLLRKEGARRVLCSTIGENAEFMEELLGAVPRAFKPSIPHLVYQYSLYTNYESDRLSASNPEIAE 552
            K+N+F++RNPE  + NQYWYS +TI  I AEV   G+   AF+STPS++FSL    L+   KV D D KW KD GFV Y+F +P ++P ++   FD +VVDPPFIT EV  +YA   + LL+  G   VLCSTI ENA  M+E+LG  P AFKPSIP+LVYQY LY+NY    L + NPEI E
Sbjct:   23 KKNRFLLRNPEKAEHNQYWYSDSTIRNIIAEVEASGATKAAFVSTPSLYFSLQSAALKQTSKVLDFDKKWEKDLGFVFYNFEEPTNLPADLEHQFDYIVVDPPFITAEVWAQYATTVKFLLKPGGM--VLCSTIAENASMMKEILGLEPIAFKPSIPNLVYQYLLYSNYPVTVLGSPNPEIPE 203
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3265.8771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAV0_ECTSI1.710e-9376.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YKM7_9STRA2.010e-7059.56Putative N6-adenine methyltransferase-domain-conta... [more]
A0A8J8NP72_HALGN4.500e-6258.56Uncharacterized protein n=2 Tax=Halteria grandinel... [more]
A0A7S1G4D1_9STRA6.140e-6255.00Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A6T7IIE5_BIGNA1.550e-5956.83Hypothetical protein n=1 Tax=Bigelowiella natans T... [more]
J9IRF9_9SPIT2.840e-5855.25N6-adenineMlase domain containing protein n=1 Tax=... [more]
A0A7S2BFX1_9STRA2.750e-5751.05Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6U1KXA3_9CHLO8.960e-5652.75Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A5J4XES2_9CHLO1.750e-5553.85N6-adenineMlase domain containing n=1 Tax=Trebouxi... [more]
A0A7S1IZX2_9EUGL3.210e-5553.55Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3265contigH-paniculata_contig3265:3407..9962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.7
Seed ortholog evalue1.8e-25
Seed eggNOG ortholog2880.D8LAV0
Preferred nameEFM5
KEGG koko:K03953,ko:K12382,ko:K16546
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04142,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04142,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.methyltransferase activity
EggNOG OGsKOG3350@1,KOG3350@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04147
Exons5
Model size1782
Cds size285
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930007.962087-UTR-H-paniculata_contig3265:3406..46121622930007.962087-UTR-H-paniculata_contig3265:3406..4612Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3265 3407..4612 -
1691481108.2791042-UTR-H-paniculata_contig3265:3406..46121691481108.2791042-UTR-H-paniculata_contig3265:3406..4612Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3265 3407..4612 -
1622930008.003535-UTR-H-paniculata_contig3265:5116..52091622930008.003535-UTR-H-paniculata_contig3265:5116..5209Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3265 5117..5209 -
1691481108.3041816-UTR-H-paniculata_contig3265:5116..52091691481108.3041816-UTR-H-paniculata_contig3265:5116..5209Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3265 5117..5209 -
1622930008.015092-UTR-H-paniculata_contig3265:6595..66991622930008.015092-UTR-H-paniculata_contig3265:6595..6699Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3265 6596..6699 -
1691481108.311947-UTR-H-paniculata_contig3265:6595..66991691481108.311947-UTR-H-paniculata_contig3265:6595..6699Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3265 6596..6699 -
1622930008.027947-UTR-H-paniculata_contig3265:9195..92501622930008.027947-UTR-H-paniculata_contig3265:9195..9250Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3265 9196..9250 -
1691481108.3195157-UTR-H-paniculata_contig3265:9195..92501691481108.3195157-UTR-H-paniculata_contig3265:9195..9250Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3265 9196..9250 -
1622930008.0459535-UTR-H-paniculata_contig3265:9923..99621622930008.0459535-UTR-H-paniculata_contig3265:9923..9962Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3265 9924..9962 -
1691481108.3272445-UTR-H-paniculata_contig3265:9923..99621691481108.3272445-UTR-H-paniculata_contig3265:9923..9962Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3265 9924..9962 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930007.974062-CDS-H-paniculata_contig3265:4612..48521622930007.974062-CDS-H-paniculata_contig3265:4612..4852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3265 4613..4852 -
1691481108.2889497-CDS-H-paniculata_contig3265:4612..48521691481108.2889497-CDS-H-paniculata_contig3265:4612..4852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3265 4613..4852 -
1622930007.990387-CDS-H-paniculata_contig3265:5071..51161622930007.990387-CDS-H-paniculata_contig3265:5071..5116Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3265 5072..5116 -
1691481108.2964013-CDS-H-paniculata_contig3265:5071..51161691481108.2964013-CDS-H-paniculata_contig3265:5071..5116Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3265 5072..5116 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3265.8771.1prot_H-paniculata_contig3265.8771.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3265 4613..5116 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3265.8771.1

>prot_H-paniculata_contig3265.8771.1 ID=prot_H-paniculata_contig3265.8771.1|Name=mRNA_H-paniculata_contig3265.8771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
MVVVDPPFITKEVRGRYAVATELLLRKEGARRVLCSTIGENAEFMEELLG
AVPRAFKPSIPHLVYQYSLYTNYESDRLSASNPEIAESMEEDDT*
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mRNA from alignment at H-paniculata_contig3265:3407..9962-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3265.8771.1 ID=mRNA_H-paniculata_contig3265.8771.1|Name=mRNA_H-paniculata_contig3265.8771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6556bp|location=Sequence derived from alignment at H-paniculata_contig3265:3407..9962- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGCGAAGAGGAACAAATTTATCATCAGAAACCCGGAGGTTAGACCTGT
ACGAATTGTATGGTAGCGTATTCTTAGCTCCGTAACTACAAGGTTTTGGC
GAACCGTCGGAAAGTACACACAGGGAAGAGCGTCTCAGTCAAGATGGATC
ATTCAGTGTCACTACGCCGACAATCGATTGAGTCTGACGCAGCGCAACTT
CATTTTACGCTCACCATTACCTAATTTTTCCAAGTGTTGTGGGTACTCCG
GTTCCAACCTTGCTACTCCACCACCGCGAAGTCTACATGCACAAAGCGTG
CACCGGCGAAATATTTAGAAGATACCGACATGGATACGATCGTATAATCA
GCCCTGTTTGTTGCAACTCTCCTTAACTCTATCGTAACTTTAATTAAGAA
CCGGGAGTGTCTTGAGCTGAAGTGCTGGGAAACACGCGGAGAGTAACACC
AAAGAAGAAGCCGCAGACTCGCCTTGCGCCACCTGTTGCCGTTATCGTAT
TCGCGGCCGCGGCTGTCAACGCCGGATAGATGTCCTGCAGTGCATGGTCG
TACTGCCCGGACCGAACAAGCTCACACCACTGATATCCATGAATTCCGTG
AAGTTAAACTCCTCTCTAGAGACGCTAGCGCGGAAACCTCAGTCACAGTA
CCCTGTCTCCTTGAATATCTACATCTCTGACATTTCGCACCGTCTCGTGA
ACAACTTGGCAGAATGGAGACCTTAACCAGTACTGGTATTCGCCGGCGAC
TATCGAAACAATTGCAGGTGCGTGCTGTGTTCGTTTATGGTGACCAAAGA
AATAGTCATACTGAGCTCTTCACCTGCCCGATGTAAAGCTTTGTACACAG
CCCAGAGCGAAACGGTAACACTTTCTAACTTGATTTTTTCCGGATGACTA
GGACTAGTGGTGCTAGTGACAGCCGAAAGTCGTTCCGTTGGGAAGATCTC
GCGGATATCAATCGGCAGACGGCAAGCGTGCTCTTTCGACATTGCGGCGT
CTTGCTCTGTCTCGATAACATCGAGTGCTTTTAATGGTCATCACGGGTAC
TGTATACATGTTCTATGATACCTACGGCGGTAGAGTTCACACTAATGTAT
GGATTGTTGGTCACAGAGACAGTAGAAGATAGACAACAAACGGTACGTGG
CATTGGCACACGCTGGTTGCTGCACGCGCGTGCATAGATGGGGGTGTACC
GTTGAGGACCAGCAGCTTGGCGAACCACATGCAATATGCCTAATATTCGA
GCATGTTTTTAACGCATATTTACTTGCCCTCTTTGGGAAGCTTCACGAGC
ACGATGTTTCTCCCCCCTTATGGATTTCATTTTGCTGATAAGTGTATACA
ACTGCAGATTAAAGCAAGCTGCATAATCTCAACATGGTACCATGGAACTG
TGATTTGAGGTTCAGAGTTATATTTCAACTGACTGTGACAAGGTTGCTTC
ACATTAGAAACGAGTATTTCAGCTAGTGAAAATGAAGGGTCGTGTCAATT
TTTGTGGTGTCCGTCGTTCATAGAAGAACTATTTCATGTTTCACCTGCAG
TACACGTGCAAGTGGTACAGGGATACTGCCTTGTGAATGTTGCCGTAGTC
CATTTTTTGCGTGGTCGAAGAGGCGCGAGACGTCCCGGTACTTGGTCATG
ATAGAGTCAGAAATTTTGTAATGTGAACAGGATCCTTATCGGTCTCTACC
AAGCTGCAAATTCAATCGTTCTTGAAGTCCATTCAGAATTTCTATTCAAC
TGGTGAGCATGCGTCGATGTATATGCATGAGTTGTAGGCGTGATGATAGA
GGAGTCGGCACTTGTTCATGCACAGCTCGTAAAGGGTCATGTAACCCAAG
CTCTCATAATGGGGGTAGCCAGTCCTGGGCTATGACCAACACTCATTATG
GTGAGTTGTGCGTGGAACTCATCTTCACTCTCTATGTGGCGTCCTACAGT
CATGGCCCTCTGCTACAAAATTTGGTTCGTCTAGTGAGCTTTTCTGGTGT
TCCTGTTATTGACAAAGGCTTATGAACGGCATCATAGGTAGCATTCGATA
GGAAGCCTGACCTGAGGCACATATGATGCTCCCACCGGTTTCCCCCCATG
CACGTTAAGTTTGTTCATTTCGTGGAAAATACCCAAGTTATTCAGAAGCT
TGAAGCTGCTGAGCATACCCCCGTTTTCATTTACGATTATTGTAGTGTTT
TCTTCAGCACAGTAAGTTGTGCGTCCCTGCTTGTACTTTTGACTTGTTAT
TTACTCTTTGGGTATTTTTTGTGTGCAAGATCAGTTCGGAAAGACACAAA
CGAGTGGTCGTTTCCGTTTCTGTTTGTCATAAGAGTTAATGCCCCCCCCC
GAACCCCCCTCGGACCTTTTGAGGGTTCCCTTTCATCGTATTTGTCTGCT
GGAATGGGCAGCTTCATTCTGTGCGTTTTCGTATTTCAGATGGGTGGCTG
GACATTGGACGGTCGCCTTCGCGTACAGTGTTTGGGAATCTTTGCGTTTC
GAAAGCTCACCTAGATTCAGAGGCTCGGTCTTCGCTTGACTTAGCACTAC
TTTGCGGCGCGTGTAAAACAATACCCATATGTTAACACAATTTGGGTATT
TCGAATGACAAATATATCAGAACCGCAACTATTGTCTGGCCGATTCGCTT
GCCGTATGGTATAGTATCCCAGTCTATTTACACTGACCGCAACGCTTGCG
TAGTTGATATGTCGATTGCCCGATAATGTAGTGCACCAAGTACAGTTCAG
CACTAGATTTAGGCACCAATCGCAGTCCAACATAAGTTCGCTTCGATTTT
TTATTATATTCCGTGAGTGTGAGAGCGCACAAGCTTACTCGGGGCAGCCA
GAATTCAGTTTAATTCAGGCAGCGCATCGGGGTGGATGATTGTTTTGACA
AGCACTCGAACTCGAACATTGCCGGCCACTGCTGCTAAAACTTCCGAGTA
ATAATATTCACGATAAGAAGAGAAGGGCCACAATGCCAAGTTATCACGCT
ACAAGCTGCAGAACGACAGAGTCCGTCGGACACGACCACGAGCGCTAACA
CACACACACACACACACACACACACACACAAACACACACAACAGTGATTC
GGCGTTCACAACACACGATGCCAGCTCTTTTCGATTACATTTGCGTGCTT
TTCGAACGGTCAACCAACCCATCAACCCGGCACGCGGTCTTCTCGTCTGT
GTTCGTCCTCCATGCACATGCACACATCTCATTTATGTTCTCTCTCGCCC
CCTTTTGGCACAGCCGAGGTGTCCGAGTATGGTTCTGGCGGTACCGCGTT
CTTGTCCACGCCGAGCATTTTCTTTTCGTTGGATGAAGATCTGCGATCCA
AGTGCAAGGTGTTTGATGTGAGAAACCCAATGGCGGGAGCGGGTGGGGGG
ATTCAATATTCGAGCAGTCAATCCGCCTGATTATTTGGCATATATTCCAA
AGTATTTTCAGGTACCCATTCACAGGACTGGGGGTTCCAATGGGAGAAGT
AATCCGCGACGATAAAAATAAACTATAATGCAGCATGCTGAGGTTGTATG
CTGTGATCCCACATTAGCAGGTACACATGTTTATCCGTCGGTAACATATG
TCAACACCAGGGGGAACAATGTTCGAGACACGTTGTTAAGCTTTGAGTGC
CAGTCTCCGCAAAATCCCTAGCGAATCCCTCTCTAATCCTGACCTGAATA
AGCAGGGGGAAACAAGGCGTATGACATGACTATGAAGGTGGGGAAACCGC
CATTGTTGAGACACTCAAGGATTTTGATGTGGTTCTGCGCATAATAATGA
CTTTACAGCACTCGATATTTATTGTCAAAATTTGTATGATGGAGCTAAAA
TTTGAATTCAGTTTCTTGTGGCAAATTATTTAAACTTTTGACTTACTATT
TTCGACGCGTTTATTACGAGCAGTTCGATCCTACTGTACTATATATTAGT
ACTTGGCCATGGCTACGCCCCGGGCACTCAGTGCTATCAGTTCTATCACA
CTTCCCAAGCTGCTGTGTGTGCCGTACACGCTATGATAGACTCTCACCGC
GTACGCGTTTCTCGGTTGCACCGAAACGTGAGAGGCAGAAAATAGTTGAA
TAATATACATATACGTAACATATTATTCCGAAATGTGTAACGCTGACGAT
AAGAACGACGGTGAGGCCTACGGTAACGATGACGAGGACGGACGATACGC
ACGGCGATTATTAGTGGTGGCTTATATATCGTATTCTGTCGCAAGTTATC
TGAGCCTATAGTCTATGTGCTAAAGAGCGTGAAGCGCGTTCTGTTGACCA
TACATTACCATAGAGACAAAGAAACGCGGTGCGCGAAATTTTTCACTGAA
AGACGGATCAATCGACACCACCACGTGCTGCGGCGCGACTCAAAGATTGA
ACCTTTGAGCTGCTACATAGTGTGGATTTTTGTAATTACGGAGTGTGTAG
TTTTGGAACTGTTCTGCTTAATGTATGGTCTTCGTGACATTTCTTCTAGT
GTCTTTCGTCTTCTCTATCTTACCGATATAATTTGTTCCTACCCTACTCC
TGCGAAATGCACTGGACAGTCTCCTATCATGGAGCCGACGACGTTTGATT
GTGCCGCCCGAAGTTGGCTACGGGGTAATACACATTATACCACAGGCTCA
TATTTTCCGAGTCTTCACAATCCCGCTTGTGAGTGTCATCCCGCTCGCTC
AAGTTATTCCGCATCCTCGTAAATATTGCTCCGCTGACTGATCGCGATCC
TAGCTGGACACGAAGTGGGCAAAGGACCCCGGTTTCGTGTTGTACGACTT
CACCAAGCCAGAGGACATCCCGCACGAAGTTCGAGGCACGTTCGACATGG
TCGTTGTCGATCCGCCTTTCATTACGAAAGAGGTGAGGGGGGTCGGGCCG
ACTGGCTCGCGGGCAGTTGTCGTTTTCCAAGATAATTACTCGATGATACT
TGTCGTGTTAAGAGGCTTTTCTGTTAGTATAGTAGAGTAGATGAAAAAGG
TTCTTGTAATGCACCCCTTTATGTTGTGATATAATTTTGCTGATGAGCGT
AAACAACTGGAATTTGAACTCCCCCCCCCTCCCCGGTGCGCGTGCCTGCG
GGTATGGGAGCGTTACGCAGTAGCAACGGAGTTGCTGCTGCGCAAGGAGG
GAGCGCGGCGAGTGCTCTGCAGCACTATCGGTGAAAACGCGGAGTTCATG
GAAGAGCTCCTCGGAGCAGTCCCACGCGCATTCAAGCCGTCTATCCCGCA
CCTGGTGTACCAGTATTCGCTGTACACGAATTATGAATCGGATAGGTTGA
GTGCGTCCAACCCGGAGATCGCCGAAAGCATGGAAGAAGATGATACGTGA
TGTGGGGTTGTGATATGACGATCATGATACGAGAAGGAAGGCTGTTCCAA
CAGCACACAACTTGAGAAAACTATAGGATCGTTTTTGTCTGTTTTGCACA
AGATGACAAAATCACGTGCCCGATATCTCGAGATTTCACCATAGTGGTCA
TAATCCAATTTCGTACTGGAAAAACAATGAGAAACTTGCTAGATAGTGGG
CGACGTTGTTTGAATCTATATGTTGGGAGCTTATCAGGGTTTTGCAGCGA
GTAGGTGTACTGCGTAATTTATATGCCAACTGAAATAAATCACATGCAGT
TTCATCCTAAGATAACAAGATGATTCTGCTGGTGAGATTCAACTCCTAAA
AATGTCGCGTTGCAATAAGCATACGGGGCCAAATCTAAGACACTTTCAAT
GAAGTAACGACAAATATTCAAACATCGGTATGAATTCGTTTGAAAGGTTG
TGTGGGTAGCATCTCATTTTTTTTTTTTTTTAACCCCCGGAAGGTTGAGG
CAAAACCTTTTCCGCTGTTTCCACATTCAGGCATTCGCCCAAACATGTCT
ACATTTCCTTTAACAGATCTCAGGGGGTTTAACTACGATTGATCTCAGTT
TGGGTTTTGGCTGTTCTCTGCGGGAGTAAGGTGTGTAGTAGGCGGCAGAC
GTGTAGAGTTGTGATGTGATAGAGACGTAGTCGATGGTGAAGCACGCATT
CTTTTTTGGAAACACGAAAACTAAATTGTTCTTTATTTTCGAGTTTCTGT
GTTTTTGTAGGTGTTTCGTTTGGGAGGTTTTGTGATTGATTGATGGTGTC
GTCTATCGATAGGTCAGCGACAAGCCACAAAGAGAAGACGTGAGGCCCTT
TTTACGAGTATACAACGTAGTAGTATTGAGTTTTTTGTTTCGAATTCGTG
CTGAACTTGTTTGTTTTTACTTCTTCCTTTTTCATCGTTTATTGCTTGTA
GCCTACTATCGTCAAGGCCAAACCTAATCGTTTAGGACTGACTGTAACCC
CCTCCCCCTACCACCCAGCGTGCGTTTGAACCCTCGTTGCGCACAGGGGA
AGGGCTCAGTGCGATGAAAATTCTGATGAGAGGGATGTGGACCATATAAC
GCAGAAACCTATTTTGTATATTTGATGCAGTAGAGTTTACCCCAGTTAGT
TTCACTTGGTTTTCGAAGTCCCCGAAGGACCAGAGTCGGTGACTAGCGTA
CGGCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig3265:3407..9962-

>mRNA_H-paniculata_contig3265.8771.1 ID=mRNA_H-paniculata_contig3265.8771.1|Name=mRNA_H-paniculata_contig3265.8771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig3265:3407..9962- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCGTTGTCGATCCGCCTTTCATTACGAAAGAGGTGAGGGGGATGGT
CGTTGTCGATCCGCCTTTCATTACGAAAGAGGTGAGGGGGCGTTACGCAG
TAGCAACGGAGTTGCTGCTGCGCAAGGAGGGAGCGCGGCGAGTGCTCTGC
AGCACTATCGGTGAAAACGCGGAGTTCATGGAAGAGCTCCTCGGAGCAGT
CCCACGCGCATTCAAGCCGTCTATCCCGCACCTGGTGTACCAGTATTCGC
TGTACACGAATTATGAATCGGATAGGTTGAGTGCGTCCAACCCGGAGATC
GCCGAAAGCATGGAAGAAGATGATACGTGACGTTACGCAGTAGCAACGGA
GTTGCTGCTGCGCAAGGAGGGAGCGCGGCGAGTGCTCTGCAGCACTATCG
GTGAAAACGCGGAGTTCATGGAAGAGCTCCTCGGAGCAGTCCCACGCGCA
TTCAAGCCGTCTATCCCGCACCTGGTGTACCAGTATTCGCTGTACACGAA
TTATGAATCGGATAGGTTGAGTGCGTCCAACCCGGAGATCGCCGAAAGCA
TGGAAGAAGATGATACGTGA
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