mRNA_H-paniculata_contig3263.8770.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3263.8770.1
Unique NamemRNA_H-paniculata_contig3263.8770.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3263.8770.1 vs. uniprot
Match: D8LTY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTY9_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 4.820e-53
Identity = 126/247 (51.01%), Postives = 149/247 (60.32%), Query Frame = 2 
Query:  233 PRDVESMKKEIAEVQTETTQSLDRAIAAAQAATCVGGDVAEELVQQREQMGQIDAEARDVETTLKRTSHNLKHGFTWRGTLTAPFRRGAPKAPLKGQ---THQDISPVFTDEYTSRTPSKSPTRPKVGRPKSAPSHA-SGDGTGLVGKGGK------DKKEAAGTVTSPGDRSPAMPPSAGHMPEGFDGQLDILDGLLDGLNTQAHAINAELRQQNDGIEVLAGRIEPAAVETSSQAQQIKRRFRVR 943
            PRDV SMK EIAE+Q  TT SLDRAIAAA+A   VG      L +QREQMG+IDAEAR ++ TLKRT HNLK+G TWRG LTAPFRR             T  DISPVF D++   TP           P  AP+H  S   T    KGG+       KK  A      G ++ +  P   ++PEGF+ QLD LD LLDGL  QA  I AEL+QQN+GIEVL  R+EP   ET+ QA+QIKRRF V+
Sbjct:   36 PRDVASMKAEIAELQAGTTASLDRAIAAAEATASVGARTQVTLKEQREQMGEIDAEARAIDGTLKRTGHNLKYGLTWRGALTAPFRRKXXXXXXXXXXXITGGDISPVFKDDFRQSTP-----------PGGAPAHGGSTSSTPSPKKGGRLKFGSPRKKAGAARAEEIGTKAASKLPE--NVPEGFETQLDTLDSLLDGLTVQAKEIGAELKQQNEGIEVLGERVEPLRQETAFQAKQIKRRFGVK 269
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3263.8770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTY9_ECTSI4.820e-5351.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3263contigH-paniculata_contig3263:13748..17376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_003830.1
Exons2
Model size2174
Cds size819
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3263.8770.1prot_H-paniculata_contig3263.8770.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3263 14973..17246 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930007.8203988-UTR-H-paniculata_contig3263:13747..149721622930007.8203988-UTR-H-paniculata_contig3263:13747..14972Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3263 13748..14972 -
1691481108.221395-UTR-H-paniculata_contig3263:13747..149721691481108.221395-UTR-H-paniculata_contig3263:13747..14972Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3263 13748..14972 -
1622930007.8705575-UTR-H-paniculata_contig3263:17246..173761622930007.8705575-UTR-H-paniculata_contig3263:17246..17376Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3263 17247..17376 -
1691481108.2464502-UTR-H-paniculata_contig3263:17246..173761691481108.2464502-UTR-H-paniculata_contig3263:17246..17376Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3263 17247..17376 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930007.839832-CDS-H-paniculata_contig3263:14972..155421622930007.839832-CDS-H-paniculata_contig3263:14972..15542Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3263 14973..15542 -
1691481108.2308247-CDS-H-paniculata_contig3263:14972..155421691481108.2308247-CDS-H-paniculata_contig3263:14972..15542Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3263 14973..15542 -
1622930007.8565621-CDS-H-paniculata_contig3263:16997..172461622930007.8565621-CDS-H-paniculata_contig3263:16997..17246Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3263 16998..17246 -
1691481108.2385838-CDS-H-paniculata_contig3263:16997..172461691481108.2385838-CDS-H-paniculata_contig3263:16997..17246Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3263 16998..17246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3263.8770.1

>prot_H-paniculata_contig3263.8770.1 ID=prot_H-paniculata_contig3263.8770.1|Name=mRNA_H-paniculata_contig3263.8770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=273bp
MTSTWPERRDTEAMPSWAQDPAARRTKKIPSEEGPRDVESMKKEIAEVQT
ETTQSLDRAIAAAQAATCVGGDVAEELVQQREQMGQIDAEARDVETTLKR
TSHNLKHGFTWRGTLTAPFRRGAPKAPLKGQTHQDISPVFTDEYTSRTPS
KSPTRPKVGRPKSAPSHASGDGTGLVGKGGKDKKEAAGTVTSPGDRSPAM
PPSAGHMPEGFDGQLDILDGLLDGLNTQAHAINAELRQQNDGIEVLAGRI
EPAAVETSSQAQQIKRRFRVRG*
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mRNA from alignment at H-paniculata_contig3263:13748..17376-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3263.8770.1 ID=mRNA_H-paniculata_contig3263.8770.1|Name=mRNA_H-paniculata_contig3263.8770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3629bp|location=Sequence derived from alignment at H-paniculata_contig3263:13748..17376- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCTACTACCGTTATCCGCCGTTATTTATTTTCTACTACCTGTCGACACT
AGTCACATAGAACTCTTTAGATCCCCTTGTCCAAGCACAATTCTCTCGAA
TAGATAAGAGCAAACGGTGCTTTGACCGATATGACATCCACATGGCCCGA
GCGACGAGACACTGAAGCTATGCCTTCTTGGGCTCAAGACCCTGCTGCAC
GGAGGACTAAGAAAATCCCATCTGAAGAGGGGCCGCGTGATGTCGAGTCC
ATGAAGAAAGAGATAGCAGAAGTACAGACAGAAACTACGCAGTCGCTTGA
CAGGGCGATCGCAGCGGCGCAGGCTGCCACATGTGTTGGTGGGGATGTGG
CGGAGGAGCTTGTTCAACAACGCGAGCAGGTAAATACGTGCATGGTTTTA
TTCCGGGCAATAGAACTGGGTTTTATCGTCATTCCTCAATGTACCGTCTA
TGTTGGGTAAATACCCTCGGGGGCTTGCTCTAGCAGAATCGAAGAGCTGT
GACCAGCTGTTCTTATGGCAAACTAGTCGCGGGGTTCAGATTTGCGTCAA
AAGTCTTCTATGGCACTCCAGACTTGGATTACAGGCTGTCCTGTTTGTCT
CAAAACACTGGTGTAAACAAGTATTTTATGGAAACTAGTGGCACACTAAA
ATAGTCGCCACCGAAATTTCCCAACCTTTTCTCTATGGGACAATTCTTAT
GACATCAAAATGAATTAAATTTGCCGCCGGTGCAGGTACCGTCCGTACAA
GGCGCCGCCAAACATGCAGACAAGCGCGGGGTAGTTGGGTGCAGCGCTCC
TGTGAAAGCTACCAAAGCATCTTACCCCTGCAACGCTGATTGGCAAAGCA
TGTTGCGCGCGTCGCGCTCGAAAACAATGTCTCTCAGTTGAAGTTTGAGC
TCCAAATTTCAGTTAATTTTGCATGTGGAGGACATTGTCGACCAGCGAGC
GCAACGCGCGCAACACGCTTCGCCCGTCGGCAGGCGTAGAGGGTGCCTTG
CAGCTACCACATGAGTACTTCACCAACAATCCCGTGCTCCCAAAGCGTTA
TGTGCATATTTGGTGGTGCTTTGTACTGTCCTGTACCCGCGGAAATTGCC
ATTTATTTGTTGTTGCTAGAACTGACCCTCTGATATGACAGGACCAGCGC
CCAGATACTTTCAGTAACCAAGAACTGAGTGCTTACAGATAACACGCGGC
ACGCTTGCCTTGCTTGAAAAACATGTCGGGTTAAAATTCCCCCCCAACCC
GGACGAATACGAATACTTGGAGCACTGGCGACGAGAATGAAGATTCAAAA
GTGTTCGTTGAATTTCTAATGGTGCGAGATGGATGATGACACACAAAATC
AAGCGTTTACCCATTGTTTATTTCTTTTTACTACTTCCTGCTCGGAGCAG
CCATCTATGGTCCGGTCGGGGCATATATCCACTAAACGTGCTCATGCTGG
ACCTTCCGTCGAATACATTTTTTTCCGGCTAGATCAGTTTGAAATATTTG
TATTTGTCATTCTCCGAGGGATGAAAACCTTGGTTTGCTACAAATGTGTA
CAGTGCGAATAGCATTTTACTGCATCTTTTTCCCGTCGGCGGTAAATTTT
CCACATAGCGTATATTTTTTTTGCATCTCAAACCTTGATATTGATCAAAG
AGTCTCTATCGAAGCCACAAACCTACCGCATATTCGACACGCTGTGAGAC
ATGAGGAATGAGATGGTTTTTGCAAGTCGATTCACGCGCAAGGTTTTATT
CCGCAACCTCTCTGGTTTGTTGAAAATTTACATGATATCGTAAAACCCCC
CCTCCCTCCCTCCCCTTTCCATCTTTCGAAAAAGATGGGTCAAATAGATG
CCGAAGCAAGGGATGTCGAGACAACTCTCAAGCGGACGAGTCACAATCTC
AAGCACGGCTTCACCTGGCGCGGCACCCTCACTGCCCCCTTTCGCCGAGG
CGCCCCGAAAGCTCCCTTGAAGGGCCAGACGCACCAAGACATTTCCCCCG
TGTTCACCGACGAGTACACATCAAGAACTCCTTCAAAATCCCCCACGAGG
CCTAAAGTCGGACGCCCCAAATCGGCACCTTCTCATGCCAGTGGCGACGG
GACAGGGCTGGTTGGAAAGGGTGGGAAGGATAAAAAGGAAGCGGCTGGTA
CAGTGACCAGTCCCGGAGACCGGAGTCCCGCGATGCCACCCAGTGCCGGG
CACATGCCTGAGGGTTTCGACGGGCAGTTAGATATTTTGGATGGCTTGTT
GGACGGGTTGAATACACAGGCGCATGCTATTAACGCGGAGCTCCGGCAGC
AAAATGACGGGATAGAGGTACTAGCGGGGCGGATTGAGCCTGCCGCGGTG
GAAACGTCATCGCAGGCGCAGCAGATCAAGCGTCGCTTCAGGGTGCGAGG
ATAAAGAGTTAGCTTTTGGGTTTGTGGGTGTGTTGCACCGTGACTTTACC
GTTACTTGATAATGAGGGAAACGGTAGTGTGTGAAAGGGTGTACCTGTTT
GGTACTTGAACAAAAATGAGGTAGCTTGGCCGGCAGCACCCTCGTAAATA
TTAGAATAAATGAATGTGCTAATGCCGAGAGCACGTTCCTGATTTTCTGG
AGTTCCTGACCCCAGACCCCCTACACAACGATCATCGGTAGTATGTCCCT
TTCCCCGAGCTGCTGTTATAGCTGTCTCCGTCTGTACCGGGGAGCGTCAT
GTTCTCGCAGATATGTTTTTGTTGGTGTCGAGGGAAGGTTTGTGCCGGTT
GAACATCCGAACACTCACATGCACGCAAACTTTCTTGGAAGTGTGTGTTT
TCCCTCCACCCCCACCGCTCTTACGTGGCGAACTTTTCTCGTCGGTTCGG
GACATTGACGAGGGTGCATGTTCTACCTAAAGTGTTACGCGTGCTCTTTG
GTTGAAAGCCGTGTTTGTGACTACCCGATAAGTGGCTTTTTTTGCCAAGG
GTATCTCGCCGTGTCATTTGGGTTGTTTCAGAAGCTGTTTTTTATCGTTA
GATGAGCTGTTGTGCCCTCTCAAGCGCTCGCTTGTGTGGCAGGAGGTGGG
CGCCTCGTCTCTATTTTCATGAGGTTCGTCGAAATTACTTTGTGCTTGTC
AGGTGGTTTTGCTAAATATTGGTTGTCCAACACTTCGATTGTTCCCGTTG
GCTTGTTAGCGCTTGGGCGTGGTTGTGGTACAAGGTAGGTAGGTGGTTTG
AGAGATGGGGATTATTACCATGATGTCTGGCGTTTTTTCTCGGCTGAAGC
GAGGAGATGTACACATGTATGTGGAGTATACGTAGTGCACTATCGAGTGG
CGTGCCACCGATGCCCATACGCAGTTCTTGAAGAGATAATGAACTTCAGC
GTATGTATGGGTATGGGACATCTGTGTCTTGTTGTTGAAGCATTCGGGCG
GGCTCAAGGTGCAACATCTGTCACCCACACTTCGCCACGAAGGTCCCATG
GGCACAGGATGGTTACCGCGTGGCACACGGATTTATTACAAGCAGCCAAC
CTTGTACCCTTGTACCCTTGTAACCTTCTTCGTCTGAACCCTTTCTCTTG
TTTGCATATAATTTCAGGCTGAAATCACTCATGTTTTGAATACCAGTGGG
AAAAAGGGGGTGAGTGTGCACCGAGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3263:13748..17376-

>mRNA_H-paniculata_contig3263.8770.1 ID=mRNA_H-paniculata_contig3263.8770.1|Name=mRNA_H-paniculata_contig3263.8770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1638bp|location=Sequence derived from alignment at H-paniculata_contig3263:13748..17376- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACATCCACATGGCCCGAGCGACGAGACACTGAAGCTATGCCTTCTTG
GGCTCAAGACCCTGCTGCACGGAGGACTAAGAAAATCCCATCTGAAGAGG
GGCCGCGTGATGTCGAGTCCATGAAGAAAGAGATAGCAGAAGTACAGACA
GAAACTACGCAGTCGCTTGACAGGGCGATCGCAGCGGCGCAGGCTGCCAC
ATGTGTTGGTGGGGATGTGGCGGAGGAGCTTGTTCAACAACGCGAGCAGA
TGACATCCACATGGCCCGAGCGACGAGACACTGAAGCTATGCCTTCTTGG
GCTCAAGACCCTGCTGCACGGAGGACTAAGAAAATCCCATCTGAAGAGGG
GCCGCGTGATGTCGAGTCCATGAAGAAAGAGATAGCAGAAGTACAGACAG
AAACTACGCAGTCGCTTGACAGGGCGATCGCAGCGGCGCAGGCTGCCACA
TGTGTTGGTGGGGATGTGGCGGAGGAGCTTGTTCAACAACGCGAGCAGAT
GGGTCAAATAGATGCCGAAGCAAGGGATGTCGAGACAACTCTCAAGCGGA
CGAGTCACAATCTCAAGCACGGCTTCACCTGGCGCGGCACCCTCACTGCC
CCCTTTCGCCGAGGCGCCCCGAAAGCTCCCTTGAAGGGCCAGACGCACCA
AGACATTTCCCCCGTGTTCACCGACGAGTACACATCAAGAACTCCTTCAA
AATCCCCCACGAGGCCTAAAGTCGGACGCCCCAAATCGGCACCTTCTCAT
GCCAGTGGCGACGGGACAGGGCTGGTTGGAAAGGGTGGGAAGGATAAAAA
GGAAGCGGCTGGTACAGTGACCAGTCCCGGAGACCGGAGTCCCGCGATGC
CACCCAGTGCCGGGCACATGCCTGAGGGTTTCGACGGGCAGTTAGATATT
TTGGATGGCTTGTTGGACGGGTTGAATACACAGGCGCATGCTATTAACGC
GGAGCTCCGGCAGCAAAATGACGGGATAGAGGTACTAGCGGGGCGGATTG
AGCCTGCCGCGGTGGAAACGTCATCGCAGGCGCAGCAGATCAAGCGTCGC
TTCAGGGTGCGAGGATAAATGGGTCAAATAGATGCCGAAGCAAGGGATGT
CGAGACAACTCTCAAGCGGACGAGTCACAATCTCAAGCACGGCTTCACCT
GGCGCGGCACCCTCACTGCCCCCTTTCGCCGAGGCGCCCCGAAAGCTCCC
TTGAAGGGCCAGACGCACCAAGACATTTCCCCCGTGTTCACCGACGAGTA
CACATCAAGAACTCCTTCAAAATCCCCCACGAGGCCTAAAGTCGGACGCC
CCAAATCGGCACCTTCTCATGCCAGTGGCGACGGGACAGGGCTGGTTGGA
AAGGGTGGGAAGGATAAAAAGGAAGCGGCTGGTACAGTGACCAGTCCCGG
AGACCGGAGTCCCGCGATGCCACCCAGTGCCGGGCACATGCCTGAGGGTT
TCGACGGGCAGTTAGATATTTTGGATGGCTTGTTGGACGGGTTGAATACA
CAGGCGCATGCTATTAACGCGGAGCTCCGGCAGCAAAATGACGGGATAGA
GGTACTAGCGGGGCGGATTGAGCCTGCCGCGGTGGAAACGTCATCGCAGG
CGCAGCAGATCAAGCGTCGCTTCAGGGTGCGAGGATAA
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