mRNA_H-paniculata_contig3260.8766.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3260.8766.1
Unique NamemRNA_H-paniculata_contig3260.8766.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3260.8766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3260contigH-paniculata_contig3260:3034..4242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size186
Cds size186
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930007.2162516-CDS-H-paniculata_contig3260:3033..31621622930007.2162516-CDS-H-paniculata_contig3260:3033..3162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3260 3034..3162 -
1691481107.9657812-CDS-H-paniculata_contig3260:3033..31621691481107.9657812-CDS-H-paniculata_contig3260:3033..3162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3260 3034..3162 -
1622930007.228165-CDS-H-paniculata_contig3260:4185..42421622930007.228165-CDS-H-paniculata_contig3260:4185..4242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3260 4186..4242 -
1691481107.9738977-CDS-H-paniculata_contig3260:4185..42421691481107.9738977-CDS-H-paniculata_contig3260:4185..4242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3260 4186..4242 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3260.8766.1prot_H-paniculata_contig3260.8766.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3260 3034..4242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3260.8766.1

>prot_H-paniculata_contig3260.8766.1 ID=prot_H-paniculata_contig3260.8766.1|Name=mRNA_H-paniculata_contig3260.8766.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
MEATATEASETRRRATGSGEMIGLLTPPAPAPKTRARLPWIGNFAAAAPL
TVLRTRGHRRHG
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mRNA from alignment at H-paniculata_contig3260:3034..4242-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3260.8766.1 ID=mRNA_H-paniculata_contig3260.8766.1|Name=mRNA_H-paniculata_contig3260.8766.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1209bp|location=Sequence derived from alignment at H-paniculata_contig3260:3034..4242- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGCGACAGCGACGGAAGCGAGCGAGACGAGGAGAAGGGCTACCGG
AAGCGGGGTAAGCAGGATAGATGTCACCGTTTTGAAGTAGGATGGGCAGG
CAGGGGTGTTTCGACAGGCATGGAAGTGGCGTTATCATGTTTTACATGTG
CTCATTGTTAACCATTGACCACATGTGCTCGGAAGTATAGACTTTTATTC
CTATTAGAGCAATTTTCGGAGGGTAGGGAGGATTAGGTTGAGGCATATTG
TCATGATATATGGACTGGGTCACGACGTTGTATCCACGTATTGGGGATTC
ATGGTGATCAATTCAAAACGAAGCTTCGGTCAAGTCTAAGGGCCTTGTCT
GCCGACTTGAAAACGTGAACACGTGAGGAAACTTGAAGAGGAGGATTGAC
CTCTACTCACCGGTCTTCGGTATTTTTCTAATACCTGGTATATCTTTTTC
GTTACTCTTTGTAACAAAGTCTAGGTTGCAGCGTTAACAATTCCTCGGGC
AAGCCGTTGAACATGGAATCGTCCTATAAATGAACTCCCGTGGTTAAAGA
TTATGACTCAGTCAAATATGGTTACAATTTCCCTTCTTTCCCTTATTATT
CGCTCCCTTCCCGGTGATGAGGGCTAATATATAAGGCGGAGATTCTGGTT
TCTTGTCCGAGTTGCGGACTGCACGCCATACTAACCGAACGGACTACTCA
CCGTGCACATCATACTTTGTCATCATCCAGGAAATGTGTTGTGACTAGCC
AGTCTTGCGCAGCTCCCACCGACAAGTACCGTAAAGGCCTGCAACGCCCA
GCCACCACCAATCCCCCTCTCCCCTAGTTCGTTCAGTTCGTGTATGATTT
ATGCAGCAGCTTGCACATACTTATCATACATCCATGTCGTTTCACGGTCA
TCGTCGTCTCGTCTGCTTTCCATAAATGTCATTTTCCTATATTTGACTCG
TATCTTACTTCACAGTACTCTTCTAAACGCGTTCTCATACTATAGATCCT
TCCCCTTGCCCCCAACACACACTCACATTTCCATACAACGTATTATACCT
TGTTCGTTTGGTGGAAACTCTCCTCAGCAGGAAATGATCGGTCTGCTAAC
GCCTCCCGCACCAGCACCAAAAACAAGAGCTCGACTGCCCTGGATAGGCA
ACTTCGCAGCAGCAGCCCCACTGACCGTTCTCAGGACACGGGGCCATCGG
AGACACGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig3260:3034..4242-

>mRNA_H-paniculata_contig3260.8766.1 ID=mRNA_H-paniculata_contig3260.8766.1|Name=mRNA_H-paniculata_contig3260.8766.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig3260:3034..4242- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGCGACAGCGACGGAAGCGAGCGAGACGAGGAGAAGGGCTACCGG
AAGCGGGATGGAAGCGACAGCGACGGAAGCGAGCGAGACGAGGAGAAGGG
CTACCGGAAGCGGGGAAATGATCGGTCTGCTAACGCCTCCCGCACCAGCA
CCAAAAACAAGAGCTCGACTGCCCTGGATAGGCAACTTCGCAGCAGCAGC
CCCACTGACCGTTCTCAGGACACGGGGCCATCGGAGACACGGCGAAATGA
TCGGTCTGCTAACGCCTCCCGCACCAGCACCAAAAACAAGAGCTCGACTG
CCCTGGATAGGCAACTTCGCAGCAGCAGCCCCACTGACCGTTCTCAGGAC
ACGGGGCCATCGGAGACACGGC
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