mRNA_H-paniculata_contig32586.8762.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32586.8762.1
Unique NamemRNA_H-paniculata_contig32586.8762.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32586.8762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32586contigH-paniculata_contig32586:1547..1763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size198
Cds size126
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32586.8762.1prot_H-paniculata_contig32586.8762.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32586 1564..1708 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930006.354382-UTR-H-paniculata_contig32586:1546..15631622930006.354382-UTR-H-paniculata_contig32586:1546..1563Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32586 1547..1563 +
1691481107.6068275-UTR-H-paniculata_contig32586:1546..15631691481107.6068275-UTR-H-paniculata_contig32586:1546..1563Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32586 1547..1563 +
1622930006.3976176-UTR-H-paniculata_contig32586:1708..17631622930006.3976176-UTR-H-paniculata_contig32586:1708..1763Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32586 1709..1763 +
1691481107.6326098-UTR-H-paniculata_contig32586:1708..17631691481107.6326098-UTR-H-paniculata_contig32586:1708..1763Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32586 1709..1763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930006.3674796-CDS-H-paniculata_contig32586:1563..16171622930006.3674796-CDS-H-paniculata_contig32586:1563..1617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32586 1564..1617 +
1691481107.616041-CDS-H-paniculata_contig32586:1563..16171691481107.616041-CDS-H-paniculata_contig32586:1563..1617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32586 1564..1617 +
1622930006.3828204-CDS-H-paniculata_contig32586:1636..17081622930006.3828204-CDS-H-paniculata_contig32586:1636..1708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32586 1637..1708 +
1691481107.6240952-CDS-H-paniculata_contig32586:1636..17081691481107.6240952-CDS-H-paniculata_contig32586:1636..1708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32586 1637..1708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32586.8762.1

>prot_H-paniculata_contig32586.8762.1 ID=prot_H-paniculata_contig32586.8762.1|Name=mRNA_H-paniculata_contig32586.8762.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=42bp
MMMRCWEMKAVVMGYQSALSPHSLHRLLTVLHPPGLYSPGR*
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mRNA from alignment at H-paniculata_contig32586:1547..1763+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32586.8762.1 ID=mRNA_H-paniculata_contig32586.8762.1|Name=mRNA_H-paniculata_contig32586.8762.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=217bp|location=Sequence derived from alignment at H-paniculata_contig32586:1547..1763+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTCGGTGAAGGTGTTGATGATGATGCGCTGCTGGGAGATGAAAGCGGTG
GTGATGGGATATCAATCGGCAGCGGAAAATTGAAATCTAGCTATCCCCGC
ACAGTCTCCATCGGTTGTTGACTGTTCTCCACCCCCCGGGACTCTACTCC
CCGGGACGGTAAGCGCACGTGGGGAATTCCTGTTCCTGTGAGCGGCCACA
CTTCTGCCGGGTTGTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig32586:1547..1763+

>mRNA_H-paniculata_contig32586.8762.1 ID=mRNA_H-paniculata_contig32586.8762.1|Name=mRNA_H-paniculata_contig32586.8762.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=252bp|location=Sequence derived from alignment at H-paniculata_contig32586:1547..1763+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGATGCGCTGCTGGGAGATGAAAGCGGTGGTGATGGGATATCAATC
GGCAATGATGATGCGCTGCTGGGAGATGAAAGCGGTGGTGATGGGATATC
AATCGGCACTATCCCCGCACAGTCTCCATCGGTTGTTGACTGTTCTCCAC
CCCCCGGGACTCTACTCCCCGGGACGGTAACTATCCCCGCACAGTCTCCA
TCGGTTGTTGACTGTTCTCCACCCCCCGGGACTCTACTCCCCGGGACGGT
AA
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