mRNA_H-paniculata_contig32572.8759.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32572.8759.1
Unique NamemRNA_H-paniculata_contig32572.8759.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig32572.8759.1 vs. uniprot
Match: D7FIR4_ECTSI (Nucleolar GTP-binding protein 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIR4_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.180e-23
Identity = 46/50 (92.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 VQDIHPFYADLLNILYDRDHYKLALGQMNMAKKLIEALSRDYVRLLKYGE 150
            + DIHPFYADLLNILYDRDHYKLALGQMNMAKKL+EALSRDYVRLLKYG+
Sbjct:   72 LDDIHPFYADLLNILYDRDHYKLALGQMNMAKKLVEALSRDYVRLLKYGD 121
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BLAST of mRNA_H-paniculata_contig32572.8759.1 vs. uniprot
Match: A0A836CDN0_9STRA (Nucleolar GTP-binding protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDN0_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 7.670e-23
Identity = 45/50 (90.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 VQDIHPFYADLLNILYDRDHYKLALGQMNMAKKLIEALSRDYVRLLKYGE 150
            + DIHPFYADLLNILYDRDHYKLALGQ+NMAKKL+EALSRDYVRLLKYG+
Sbjct:   72 LDDIHPFYADLLNILYDRDHYKLALGQINMAKKLMEALSRDYVRLLKYGD 121
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BLAST of mRNA_H-paniculata_contig32572.8759.1 vs. uniprot
Match: A0A482RHT5_9ARCH (OBG-type G domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RHT5_9ARCH)

HSP 1 Score: 92.0 bits (227), Expect = 2.640e-21
Identity = 38/53 (71.70%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 VQDIHPFYADLLNILYDRDHYKLALGQMNMAKKLIEALSRDYVRLLKYGEVSF 159
            +QDIHPFYADL+N+LYDRDHYKLALGQ+N+A++LI+ +S+DY+RLLKYG+  F
Sbjct:    1 MQDIHPFYADLINVLYDRDHYKLALGQLNVARQLIDNISKDYLRLLKYGDSMF 53
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BLAST of mRNA_H-paniculata_contig32572.8759.1 vs. uniprot
Match: A0A7S3FD18_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FD18_9VIRI)

HSP 1 Score: 90.5 bits (223), Expect = 4.800e-21
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 VQDIHPFYADLLNILYDRDHYKLALGQMNMAKKLIEALSRDYVRLLKYGE 150
            V+DIHPFYADLLN+LYDRDHYKLALG +NMA+ LI  +S+DYVRLLKYG+
Sbjct:   75 VEDIHPFYADLLNVLYDRDHYKLALGHVNMARNLISKVSKDYVRLLKYGD 124
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BLAST of mRNA_H-paniculata_contig32572.8759.1 vs. uniprot
Match: A0A6V1RDW6_HETAK (Nucleolar GTP-binding protein 1 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RDW6_HETAK)

HSP 1 Score: 93.2 bits (230), Expect = 8.200e-21
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 VQDIHPFYADLLNILYDRDHYKLALGQMNMAKKLIEALSRDYVRLLKYGE 150
            + DIHPFYADL+NILYDRDHYKLALGQ+N AK LIE LSRDYVRL+KYG+
Sbjct:   72 LDDIHPFYADLINILYDRDHYKLALGQLNTAKNLIEVLSRDYVRLMKYGD 121
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BLAST of mRNA_H-paniculata_contig32572.8759.1 vs. uniprot
Match: A0A0K8RBT7_IXORI (Putative cdna flj55652 highly similar to nucleolar gtp-binding protein 1 n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A0K8RBT7_IXORI)

HSP 1 Score: 86.7 bits (213), Expect = 1.100e-20
Identity = 35/50 (70.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 VQDIHPFYADLLNILYDRDHYKLALGQMNMAKKLIEALSRDYVRLLKYGE 150
            + DIHPFYADL+NILYD+DHYKLALGQ+N+AK L++ +++DYVRL+KYG+
Sbjct:   25 LDDIHPFYADLINILYDKDHYKLALGQINIAKNLVDNVAKDYVRLMKYGD 74
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BLAST of mRNA_H-paniculata_contig32572.8759.1 vs. uniprot
Match: A0A2J7ZT79_9CHLO (Nucleolar GTP-binding protein 1 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZT79_9CHLO)

HSP 1 Score: 87.8 bits (216), Expect = 1.410e-20
Identity = 35/50 (70.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 VQDIHPFYADLLNILYDRDHYKLALGQMNMAKKLIEALSRDYVRLLKYGE 150
            V+DIHPFYADLLN+LYD+DHYKLALGQ+N A+ L++ +++DY+RLLKYG+
Sbjct:   72 VEDIHPFYADLLNVLYDKDHYKLALGQLNTARNLVDRVAQDYIRLLKYGD 121
[Close]
BLAST of mRNA_H-paniculata_contig32572.8759.1 vs. uniprot
Match: A0A5J4YH33_9CHLO (Nucleolar GTP-binding protein 1 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YH33_9CHLO)

HSP 1 Score: 92.4 bits (228), Expect = 1.530e-20
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 VQDIHPFYADLLNILYDRDHYKLALGQMNMAKKLIEALSRDYVRLLKYGE 150
            V DIHPFYADLLN+LYDRDHYKLALGQ+NMA+ LI+ +S+DYVRLLKYG+
Sbjct:   72 VDDIHPFYADLLNVLYDRDHYKLALGQLNMARNLIDRVSQDYVRLLKYGD 121
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BLAST of mRNA_H-paniculata_contig32572.8759.1 vs. uniprot
Match: A0A5F9C6U4_RABIT (OBG-type G domain-containing protein n=2 Tax=Oryctolagus cuniculus TaxID=9986 RepID=A0A5F9C6U4_RABIT)

HSP 1 Score: 87.8 bits (216), Expect = 1.670e-20
Identity = 35/50 (70.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 VQDIHPFYADLLNILYDRDHYKLALGQMNMAKKLIEALSRDYVRLLKYGE 150
            ++DIHPFYADL+NILYD+DHYKLALGQ+N+AK L++ +++DYVRL+KYG+
Sbjct:   20 IRDIHPFYADLMNILYDKDHYKLALGQINIAKNLVDNVAKDYVRLMKYGD 69
[Close]
BLAST of mRNA_H-paniculata_contig32572.8759.1 vs. uniprot
Match: A0A8D8KW74_CULPI (Nucleolar GTP-binding protein 1 (Fragment) n=2 Tax=Bilateria TaxID=33213 RepID=A0A8D8KW74_CULPI)

HSP 1 Score: 86.7 bits (213), Expect = 1.950e-20
Identity = 35/50 (70.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 VQDIHPFYADLLNILYDRDHYKLALGQMNMAKKLIEALSRDYVRLLKYGE 150
            + DIHPFYADL+N+LYD+DHYKLALGQ+N+AK LI+ +++DYVRL+KYG+
Sbjct:   56 LDDIHPFYADLMNVLYDKDHYKLALGQINIAKNLIDNVAKDYVRLMKYGD 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32572.8759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIR4_ECTSI1.180e-2392.00Nucleolar GTP-binding protein 1 n=2 Tax=Ectocarpus... [more]
A0A836CDN0_9STRA7.670e-2390.00Nucleolar GTP-binding protein 1 n=1 Tax=Tribonema ... [more]
A0A482RHT5_9ARCH2.640e-2171.70OBG-type G domain-containing protein n=1 Tax=archa... [more]
A0A7S3FD18_9VIRI4.800e-2178.00Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A6V1RDW6_HETAK8.200e-2182.00Nucleolar GTP-binding protein 1 n=1 Tax=Heterosigm... [more]
A0A0K8RBT7_IXORI1.100e-2070.00Putative cdna flj55652 highly similar to nucleolar... [more]
A0A2J7ZT79_9CHLO1.410e-2070.00Nucleolar GTP-binding protein 1 n=1 Tax=Tetrabaena... [more]
A0A5J4YH33_9CHLO1.530e-2080.00Nucleolar GTP-binding protein 1 n=1 Tax=Trebouxia ... [more]
A0A5F9C6U4_RABIT1.670e-2070.00OBG-type G domain-containing protein n=2 Tax=Oryct... [more]
A0A8D8KW74_CULPI1.950e-2070.00Nucleolar GTP-binding protein 1 (Fragment) n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32572contigH-paniculata_contig32572:1964..2128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue1.5e-19
Seed eggNOG ortholog2880.D7FIR4
KEGG koko:K06943,ko:K11269,ko:K19307
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016072,GO:0017076,GO:0019001,GO:0022613,GO:0031974,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363
EggNOG free text desc.negative regulation of collagen binding
EggNOG OGsCOG1084@1,KOG1490@2759
EC2.1.1.313
COG Functional cat.EGP
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03036
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930005.9741938-CDS-H-paniculata_contig32572:1963..21281622930005.9741938-CDS-H-paniculata_contig32572:1963..2128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32572 1964..2128 -
1691481107.4243174-CDS-H-paniculata_contig32572:1963..21281691481107.4243174-CDS-H-paniculata_contig32572:1963..2128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32572 1964..2128 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32572.8759.1prot_H-paniculata_contig32572.8759.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32572 1964..2128 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32572.8759.1

>prot_H-paniculata_contig32572.8759.1 ID=prot_H-paniculata_contig32572.8759.1|Name=mRNA_H-paniculata_contig32572.8759.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
VQDIHPFYADLLNILYDRDHYKLALGQMNMAKKLIEALSRDYVRLLKYGE
VSFH*
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mRNA from alignment at H-paniculata_contig32572:1964..2128-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32572.8759.1 ID=mRNA_H-paniculata_contig32572.8759.1|Name=mRNA_H-paniculata_contig32572.8759.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at H-paniculata_contig32572:1964..2128- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCAGGATATTCATCCTTTTTACGCGGACCTATTGAACATCCTCTATGA
CCGCGATCACTACAAGCTCGCCCTGGGACAAATGAACATGGCGAAGAAAC
TGATCGAGGCACTCAGCAGGGACTACGTTCGCCTTCTCAAGTATGGTGAG
GTCTCTTTTCACTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig32572:1964..2128-

>mRNA_H-paniculata_contig32572.8759.1 ID=mRNA_H-paniculata_contig32572.8759.1|Name=mRNA_H-paniculata_contig32572.8759.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig32572:1964..2128- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCAGGATATTCATCCTTTTTACGCGGACCTATTGAACATCCTCTATGA
CCGCGATCACTACAAGCTCGCCCTGGGACAAATGAACATGGCGAAGAAAC
TGATCGAGGCACTCAGCAGGGACTACGTTCGCCTTCTCAAGTATGGTGAG
GTCTCTTTTCACTAAGTTCAGGATATTCATCCTTTTTACGCGGACCTATT
GAACATCCTCTATGACCGCGATCACTACAAGCTCGCCCTGGGACAAATGA
ACATGGCGAAGAAACTGATCGAGGCACTCAGCAGGGACTACGTTCGCCTT
CTCAAGTATGGTGAGGTCTCTTTTCACTAA
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