mRNA_H-paniculata_contig3257.8757.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3257.8757.1
Unique NamemRNA_H-paniculata_contig3257.8757.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3257.8757.1 vs. uniprot
Match: D8LJX0_ECTSI (MutS protein homolog 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX0_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 7.970e-18
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 2 
Query:   62 FWECSLRIRTDQGGDSVMSVDRSTAKELELIADARSGGQKKSLFGVINHT 211
            F + SLR+RTD GGD  M +DRSTAKELELI DARSGGQKKSLFGVINHT
Sbjct:  118 FADASLRVRTDSGGDGSMYIDRSTAKELELITDARSGGQKKSLFGVINHT 167
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3257.8757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJX0_ECTSI7.970e-1880.00MutS protein homolog 4 n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3257contigH-paniculata_contig3257:2081..2879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size216
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930005.747694-CDS-H-paniculata_contig3257:2081..21051622930005.747694-CDS-H-paniculata_contig3257:2081..2105Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3257 2082..2105 -
1691481107.3459654-CDS-H-paniculata_contig3257:2081..21051691481107.3459654-CDS-H-paniculata_contig3257:2081..2105Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3257 2082..2105 -
1622930005.7646573-CDS-H-paniculata_contig3257:2690..28791622930005.7646573-CDS-H-paniculata_contig3257:2690..2879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3257 2691..2879 -
1691481107.3553195-CDS-H-paniculata_contig3257:2690..28791691481107.3553195-CDS-H-paniculata_contig3257:2690..2879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3257 2691..2879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3257.8757.1prot_H-paniculata_contig3257.8757.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3257 2082..2879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3257.8757.1

>prot_H-paniculata_contig3257.8757.1 ID=prot_H-paniculata_contig3257.8757.1|Name=mRNA_H-paniculata_contig3257.8757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
CNQSVFIFVPYRTRSPLPRLVLGMQSSHQDGPGRRQRHVCRPQHRQGARA
DRRRPLGRTKEESIRRHQPYQ
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mRNA from alignment at H-paniculata_contig3257:2081..2879-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3257.8757.1 ID=mRNA_H-paniculata_contig3257.8757.1|Name=mRNA_H-paniculata_contig3257.8757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=799bp|location=Sequence derived from alignment at H-paniculata_contig3257:2081..2879- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTAATCAATCGGTTTTCATTTTCGTGCCGTACCGTACACGAAGCCCTCT
CCCACGACTAGTTTTGGGAATGCAGTCTTCGCATCAGGACGGACCAGGGC
GGCGACAGCGTCATGTCTGTCGACCGCAGCACCGCCAAGGAGCTCGAGCT
GATCGCCGACGCCCGCTCGGGAGGACAAAAGAAGAGTCTGTGAGTTGCGA
TAGAAAACCCGTCAGGACATTAAGAAGATTATAGCGGACATTGCTTTTCC
TTCTTCGGTGCAACAGTAGTTCGCATACATTCAGACAGTGTTGCACTCCA
CGAAATTCTGTCAGGATTACGCATGTTTTATTGCTCCCGTTTTGGCAAAG
ACCAACGTGTCTCTGACTCGTTTCCAACCTCGTACATGAATATGTTTTGC
CTGGTTTCACAGTCGTTCGACGGAAAGCTTAACCGAAACCAACGCACGTC
TTTTCGTTCGTATTCGAGCATTCAGTTTGATGCTGCTCGAGTTCAGACCA
CAGAGACTAGCTTTCTCTTCAAGGATACACGTGGTATCGATCAAGTTGAA
GTGCCATTAGTAGTTACCTCGAACCTTACTCTCTGCGTGTCGTACCCGTT
GTACGAAGTTATCCCAATGTTCGTTCCTCAACGCCTGCGCCTTCGCCGGG
CGCTTCTGAAACGACGCCCCTGAATCGAACCTTAGCAGGAGTCCGTACCG
CAGTCAAAGCGTAACCTTATACTTTACGACGCGCACGAGTAAATCAACCA
TCGTTCAACTTGGTGCTGAAACAGATTCGGCGTCATCAACCATACCAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3257:2081..2879-

>mRNA_H-paniculata_contig3257.8757.1 ID=mRNA_H-paniculata_contig3257.8757.1|Name=mRNA_H-paniculata_contig3257.8757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig3257:2081..2879- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTAATCAATCGGTTTTCATTTTCGTGCCGTACCGTACACGAAGCCCTCT
CCCACGACTAGTTTTGGGAATGCAGTCTTCGCATCAGGACGGACCAGGGC
GGCGACAGCGTCATGTCTGTCGACCGCAGCACCGCCAAGGAGCTCGAGCT
GATCGCCGACGCCCGCTCGGGAGGACAAAAGAAGAGTCTTGTAATCAATC
GGTTTTCATTTTCGTGCCGTACCGTACACGAAGCCCTCTCCCACGACTAG
TTTTGGGAATGCAGTCTTCGCATCAGGACGGACCAGGGCGGCGACAGCGT
CATGTCTGTCGACCGCAGCACCGCCAAGGAGCTCGAGCTGATCGCCGACG
CCCGCTCGGGAGGACAAAAGAAGAGTCTATTCGGCGTCATCAACCATACC
AGATTCGGCGTCATCAACCATACCAG
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