mRNA_H-paniculata_contig32552.8754.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32552.8754.1
Unique NamemRNA_H-paniculata_contig32552.8754.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig32552.8754.1 vs. uniprot
Match: A0A6H5L2H2_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H2_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.470e-12
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 1
Query:   13 KECSRADKWMVMLNKFGDWRKGTKSKKLRTRVRKGVPDCVRGEVWQRLAGS 165
            KE  RA KW  M++ F  WR G K+ + R RVRKGVPDCVRG+VWQ L GS
Sbjct:  363 KEGRRAQKWRKMIDNFDSWRMGKKATRFRNRVRKGVPDCVRGKVWQMLMGS 413          
BLAST of mRNA_H-paniculata_contig32552.8754.1 vs. uniprot
Match: A0A7S1TPD6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPD6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.610e-9
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   13 KECSRADKWMVMLNKFGDWRKGTKSKKLRTRVRKGVPDCVRGEVWQRLAGSKV 171
            KEC R DKW+ ML    DW K  KSKKL+ R+RKGVP+ +RG +W   AG ++
Sbjct:  506 KECRREDKWIAMLE---DWHKYRKSKKLKHRIRKGVPNKLRGRLWAEFAGVRL 555          
BLAST of mRNA_H-paniculata_contig32552.8754.1 vs. uniprot
Match: A0A0L0DCR4_THETB (Plant adhesion molecule 1 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DCR4_THETB)

HSP 1 Score: 58.2 bits (139), Expect = 2.190e-8
Identity = 26/54 (48.15%), Postives = 32/54 (59.26%), Query Frame = 1
Query:   13 KECSRADKWMVMLNKFGDWRKGTKSKKLRTRVRKGVPDCVRGEVWQRLAGSKVW 174
            KE  RA KW+ M   F DWR+     K + RVRKG+PDCVRG+ W   +G   W
Sbjct:  238 KESERATKWLTM---FRDWRRWRVKPKTKARVRKGIPDCVRGQAWLLASGGHEW 288          
BLAST of mRNA_H-paniculata_contig32552.8754.1 vs. uniprot
Match: A0A5K3FI19_MESCO (Uncharacterized protein n=3 Tax=Mesocestoides corti TaxID=53468 RepID=A0A5K3FI19_MESCO)

HSP 1 Score: 53.5 bits (127), Expect = 6.150e-7
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:   22 SRADKWMVMLNKFGDWRKGTKSKKLRTRVRKGVPDCVRGEVWQRLAGSKV 171
            +R  KW++M   +  W   T  KKLR R RKG+PD +RGE WQRL GS V
Sbjct:   37 AREMKWLMMCRNWDYW-SSTGLKKLRERCRKGIPDSMRGEAWQRLVGSAV 85          
BLAST of mRNA_H-paniculata_contig32552.8754.1 vs. uniprot
Match: A0A0R3UN10_MESCO (Uncharacterized protein (Fragment) n=1 Tax=Mesocestoides corti TaxID=53468 RepID=A0A0R3UN10_MESCO)

HSP 1 Score: 53.5 bits (127), Expect = 8.070e-7
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:   22 SRADKWMVMLNKFGDWRKGTKSKKLRTRVRKGVPDCVRGEVWQRLAGSKV 171
            +R  KW++M   +  W   T  KKLR R RKG+PD +RGE WQRL GS V
Sbjct:   77 AREMKWLMMCRNWDYW-SSTGLKKLRERCRKGIPDSMRGEAWQRLVGSAV 125          
BLAST of mRNA_H-paniculata_contig32552.8754.1 vs. uniprot
Match: A0A7S2SAE3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SAE3_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.260e-6
Identity = 27/57 (47.37%), Postives = 33/57 (57.89%), Query Frame = 1
Query:    7 RLKECSRADKWMVMLNKFGDWR--KGTKSKKLRTRVRKGVPDCVRGEVWQRLAGSKV 171
            R +   R  KW  MLN   DW+  K  K KKLR R+RKG+P+ VRG+ W  L G K 
Sbjct:   41 RSRNIKREKKWNTMLN---DWKATKSRKKKKLRRRLRKGIPNAVRGQAWVHLQGVKT 94          
BLAST of mRNA_H-paniculata_contig32552.8754.1 vs. uniprot
Match: X6ND80_RETFI (TBC domain containing protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6ND80_RETFI)

HSP 1 Score: 51.6 bits (122), Expect = 1.330e-6
Identity = 23/50 (46.00%), Postives = 31/50 (62.00%), Query Frame = 1
Query:   13 KECSRADKWMVMLNKFGDWRKGTKSKKLRTRVRKGVPDCVRGEVWQRLAG 162
            KE  R  KW+ ML     +  G +  KL+ R+RKG+P+ VRG VW+RL G
Sbjct:   42 KENERVKKWLFMLEHEQQFFHGNRKSKLKARIRKGIPNAVRGRVWKRLVG 91          
BLAST of mRNA_H-paniculata_contig32552.8754.1 vs. uniprot
Match: A0A392NWB4_9FABA (EVI5-like protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392NWB4_9FABA)

HSP 1 Score: 50.1 bits (118), Expect = 2.980e-6
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    7 RLKECSRADKWMVMLNKFG-DWRKGTKSKK--LRTRVRKGVPDCVRGEVWQRLAGSK 168
            R+KE  R  KW  M+   G DW+   + K   ++ R+RKG+PDC+RG VWQ ++GS+
Sbjct:   48 RIKEGRRVRKWRKMIGVGGSDWKHYLRRKPYVVKRRIRKGIPDCLRGLVWQLISGSR 104          
BLAST of mRNA_H-paniculata_contig32552.8754.1 vs. uniprot
Match: A0A0R3W6G0_TAEAS (Uncharacterized protein n=1 Tax=Taenia asiatica TaxID=60517 RepID=A0A0R3W6G0_TAEAS)

HSP 1 Score: 49.3 bits (116), Expect = 4.870e-6
Identity = 24/44 (54.55%), Postives = 28/44 (63.64%), Query Frame = 1
Query:   34 KWMVMLNKFGDWRKGTKSKKLRTRVRKGVPDCVRGEVWQRLAGS 165
            KW+ M   +  W   T  KKLR R RKG+PD +RGE WQRL GS
Sbjct:    2 KWLDMCRNWDYW-STTGIKKLRERCRKGIPDSMRGEAWQRLVGS 44          
BLAST of mRNA_H-paniculata_contig32552.8754.1 vs. uniprot
Match: A0A2C9KUS6_BIOGL (Rab-GAP TBC domain-containing protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9KUS6_BIOGL)

HSP 1 Score: 51.2 bits (121), Expect = 6.180e-6
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 1
Query:    1 KRRLKECSRADKWMVMLNKFGDWRKGTKSKKLRTRVRKGVPDCVRGEVWQRL 156
            K +L E  R  KW+ ML+K   W K    +KL  RV KG+PDCVRGEVW +L
Sbjct:   71 KAKLVERERTTKWLKMLSK---WDKYFPGEKLTRRVYKGIPDCVRGEVWSKL 119          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32552.8754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2H2_9PHAE3.470e-1260.78Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A7S1TPD6_9STRA4.610e-952.83Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A0L0DCR4_THETB2.190e-848.15Plant adhesion molecule 1 n=1 Tax=Thecamonas trahe... [more]
A0A5K3FI19_MESCO6.150e-752.00Uncharacterized protein n=3 Tax=Mesocestoides cort... [more]
A0A0R3UN10_MESCO8.070e-752.00Uncharacterized protein (Fragment) n=1 Tax=Mesoces... [more]
A0A7S2SAE3_9STRA1.260e-647.37Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
X6ND80_RETFI1.330e-646.00TBC domain containing protein (Fragment) n=1 Tax=R... [more]
A0A392NWB4_9FABA2.980e-643.86EVI5-like protein (Fragment) n=1 Tax=Trifolium med... [more]
A0A0R3W6G0_TAEAS4.870e-654.55Uncharacterized protein n=1 Tax=Taenia asiatica Ta... [more]
A0A2C9KUS6_BIOGL6.180e-651.92Rab-GAP TBC domain-containing protein n=1 Tax=Biom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32552contigH-paniculata_contig32552:2041..2220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue2.6e-09
Seed eggNOG ortholog2880.D7G5V3
KEGG koko:K19944,ko:K20133
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG1102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930005.4734735-CDS-H-paniculata_contig32552:2040..22201622930005.4734735-CDS-H-paniculata_contig32552:2040..2220Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32552 2041..2220 -
1691481107.2493122-CDS-H-paniculata_contig32552:2040..22201691481107.2493122-CDS-H-paniculata_contig32552:2040..2220Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32552 2041..2220 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32552.8754.1prot_H-paniculata_contig32552.8754.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32552 2041..2220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32552.8754.1

>prot_H-paniculata_contig32552.8754.1 ID=prot_H-paniculata_contig32552.8754.1|Name=mRNA_H-paniculata_contig32552.8754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
KRRLKECSRADKWMVMLNKFGDWRKGTKSKKLRTRVRKGVPDCVRGEVWQ
RLAGSKVWC*
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mRNA from alignment at H-paniculata_contig32552:2041..2220-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32552.8754.1 ID=mRNA_H-paniculata_contig32552.8754.1|Name=mRNA_H-paniculata_contig32552.8754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at H-paniculata_contig32552:2041..2220- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAGGAGGTTGAAAGAATGCTCTCGAGCAGACAAGTGGATGGTGATGCT TAACAAGTTTGGGGACTGGCGGAAGGGCACGAAGTCTAAGAAGCTCAGGA CCAGGGTCAGAAAAGGAGTGCCCGACTGCGTTCGAGGGGAGGTGTGGCAA AGACTTGCTGGCTCCAAGGTGTGGTGTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig32552:2041..2220-

>mRNA_H-paniculata_contig32552.8754.1 ID=mRNA_H-paniculata_contig32552.8754.1|Name=mRNA_H-paniculata_contig32552.8754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig32552:2041..2220- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAGGAGGTTGAAAGAATGCTCTCGAGCAGACAAGTGGATGGTGATGCT
TAACAAGTTTGGGGACTGGCGGAAGGGCACGAAGTCTAAGAAGCTCAGGA
CCAGGGTCAGAAAAGGAGTGCCCGACTGCGTTCGAGGGGAGGTGTGGCAA
AGACTTGCTGGCTCCAAGGTGTGGTGTTGAAAAAGGAGGTTGAAAGAATG
CTCTCGAGCAGACAAGTGGATGGTGATGCTTAACAAGTTTGGGGACTGGC
GGAAGGGCACGAAGTCTAAGAAGCTCAGGACCAGGGTCAGAAAAGGAGTG
CCCGACTGCGTTCGAGGGGAGGTGTGGCAAAGACTTGCTGGCTCCAAGGT
GTGGTGTTGA
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