mRNA_H-paniculata_contig3255.8753.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3255.8753.1
Unique NamemRNA_H-paniculata_contig3255.8753.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3255.8753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3255contigH-paniculata_contig3255:11572..15317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size322
Cds size243
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3255.8753.1prot_H-paniculata_contig3255.8753.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3255 12370..15309 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930005.3491611-UTR-H-paniculata_contig3255:11571..116221622930005.3491611-UTR-H-paniculata_contig3255:11571..11622Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3255 11572..11622 +
1691481107.1968327-UTR-H-paniculata_contig3255:11571..116221691481107.1968327-UTR-H-paniculata_contig3255:11571..11622Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3255 11572..11622 +
1622930005.3685365-UTR-H-paniculata_contig3255:12349..123691622930005.3685365-UTR-H-paniculata_contig3255:12349..12369Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3255 12350..12369 +
1691481107.2094436-UTR-H-paniculata_contig3255:12349..123691691481107.2094436-UTR-H-paniculata_contig3255:12349..12369Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3255 12350..12369 +
1622930005.4272423-UTR-H-paniculata_contig3255:15309..153171622930005.4272423-UTR-H-paniculata_contig3255:15309..15317Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3255 15310..15317 +
1691481107.2381015-UTR-H-paniculata_contig3255:15309..153171691481107.2381015-UTR-H-paniculata_contig3255:15309..15317Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3255 15310..15317 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930005.3872557-CDS-H-paniculata_contig3255:12369..124841622930005.3872557-CDS-H-paniculata_contig3255:12369..12484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3255 12370..12484 +
1691481107.2210608-CDS-H-paniculata_contig3255:12369..124841691481107.2210608-CDS-H-paniculata_contig3255:12369..12484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3255 12370..12484 +
1622930005.4116216-CDS-H-paniculata_contig3255:15181..153091622930005.4116216-CDS-H-paniculata_contig3255:15181..15309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3255 15182..15309 +
1691481107.2300353-CDS-H-paniculata_contig3255:15181..153091691481107.2300353-CDS-H-paniculata_contig3255:15181..15309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3255 15182..15309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3255.8753.1

>prot_H-paniculata_contig3255.8753.1 ID=prot_H-paniculata_contig3255.8753.1|Name=mRNA_H-paniculata_contig3255.8753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
MPALCHGRCECFRDDRSQEWSRDRCWRRFRGERRGRPGAYCTAAYQRRCP
WVDPNGGAALGDVLYPRSHRCLAPKTAARR*
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mRNA from alignment at H-paniculata_contig3255:11572..15317+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3255.8753.1 ID=mRNA_H-paniculata_contig3255.8753.1|Name=mRNA_H-paniculata_contig3255.8753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3746bp|location=Sequence derived from alignment at H-paniculata_contig3255:11572..15317+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTGAGCAGCCTTGGGGGGGGGGCGGTCAGCAGCAAGGGAAGCGACGCA
GGTAAAAAGCCAACTACTGTACTGTACTGTACTGTACTGTACTGTACTGT
ACTTGAATTTTGCGGGACTGTGGTGTTGGCCTGGTGTCTGCTACATTTTC
TGCTGCAATGAAGTATACAAGGACTGGTATGCTATACGGACCTGGGTTGT
GCTGTGTTGCGCTGAAACCTGCTGTGCTCTAGTGGTGTGTGTGTTGCTGC
GCCGGGCTTCATTGCATTGCATTGCTGTGCTGTGTTGGGCTTGTACTGCG
CTGCATTGTGTTGCACACTTTACGTTGCTGTACGGTGCGGTGTGCTGCCG
GGCTGTACTTCATTATGTTGTATTGCGTTGTACTCTGCTGTACTGGATGG
CGCTGGGCTATGATGTGCTGCACTGTACTGTATTATTGCGGCGCTGTACC
ATGCCGAAGTGCGTTCTACTATACTGTACTCCATATTATTGGATTGCGAT
GCGTTATGCTGTGCTTCATTGTACTGAAATGTACCTTGTCACACTGTGCC
ATGTGGACATCTTCCAGAGTATCACCACCGACCCTTGCAATGTATCGTGA
TGTACCCAGTGACAAATCGATGATATGGACACGTACACTTCAATTCCTAA
CTCCACCTTCCCCTCTCCAAGCGAGTTAAGATAATGACTTTATTTGCAGT
ATCATACTCCTGTATTTGTCTCATTATCCGGGGACGCTGATTCAAAATCC
ACGTTTTTCACGCCAACCACAAGGAAAGCTTGGGGACGGAGAGACGACAT
GCCCGCCTTATGCCACGGAAGATGCGAGTGTTTCCGCGACGATCGCTCCC
AAGAATGGTCCCGAGACCGGTGTTGGAGGAGATTTAGGGGGGAACGAAGA
GGCCGCCCCGGCGGTAAGTGGAGATGCCGATTTCGATGGTACTCTGGCGT
CTTATCTCGGCTCGTTCGGGTGGGGGGCAGCTTGCTCATGCCATTGGGAG
GATTGCGTTTGTTAAGGTGAAACTTGCGTGCCTTGGAGTACTTACGGGTC
ATCGTAGTATCCTGAGTTGGTAAACCTTAGTAAGCAAATTTATTTCAAGT
GAGAGGGGCCGATTTATTTCCCACGTATTCCTTTACTACCACAAGTTCCA
CGTACGTCCCGCAAGGTTAGCCGCAAACGCCGAGTAGGACTACTACACTA
TTACATGTCTGCACGATAGCCAAGCAACAACCAATTCTTTCGCAACATTG
AGCAGAGAAATAGATTGGTGATCATGAGGCTTCCATGAATGACAACCAAG
TTTGTCGATATGTGAGCTGGAGGACGCCATCAGTGACTTCGAAACCTGTG
CAGCTCTCTACGACTCTTGAATCTGAAAATATATGTACTCTTTTATTTAT
ACTCTCTTATAATAGACTCTTGCCATGGTCCAGTTGTTGACGTACACGTG
CCCAAAGTTGTCTGAGATATTGGACGCCAGCTCCAAACTGCTCCGCCAAC
TCTGGCCCAACGCCTTTCGAGGGCCGTTCCTGACCGGGAGATAGCGCTAA
AGCGTACCATACGGCCAACGCGTTTCGACCTTCCTCGCTCAGCTCGCATG
TTTGCCCCGGACTGATGGGCTCTCGGCAAAAGATGTCGAACTCGCCGGAG
TGGTAATGTTGGTTGCGAAACTCGCGCCGCAGACGGTCTGGAGGCTGTAC
GAGAGTCGTACAGCTCTTGGCGAGTTGCTGAGAGATTTTGTGGCGATAGG
GGGGGGGCGCTTTGTCCGTCGCCGGGCGCAGCGCAGCCGCTCAAAATGGA
GCCGAAAAGGTCCGTCTTGTTAGTTTCCCTTCTCGCAATTTTTTCGGAAT
TATTTCGGAACAATATGTGAAAACGAAATAATCATTCTTAACTTTTACCT
CTATAGCTTTAATTCAAGCTATACATGACCAAAACACTCTTCTTATTCGT
AGAGAAACGGCCTGCACAAGAAATGAGAAATCACATCGTCGCAGACTTAT
GGAACGGAGGGAGTACTATTTTTATTCAGCAATCGACAGGAACAGGCACA
CCTAGAGGTTTTTGGGCCAAAAACGTTACAGGATGACATATCACCATGTA
AACTGCCGCATTACCAAAAGTCTGATTGACCGAAACAGTCGCAGAACGTT
TTTGAGCTAGAAACGTCATAGTTATACGTGTTTCAGCCTTCGTTTTCCCC
ACAAGTGTACCCGATACGGGCATTTCATTGTTTTTGCCGGAATTTGTACC
TGCTTGATGCGATTTCCGAGAAAACAAGATATCAGCATCTACGCCACTGC
GACAGTGGCGAAACAACGATGGTCATTTTTCAAACGGCAGGTGCTCCTCG
GAAAGTAGCCCCGACCCCAACACATCCGTTCATATCTGTTTCGATATCCG
ATCCCGACCTACGACTCTTTGATCAGAAAGTAGCTCGATGTATGTTGTGC
TGCACAGTTTGCCCGAGGCAGAGCCACGACGGAAAATCTGTGCCCGGATA
AACACAAGCAGGCGCAAAAAGGGCAACACTGTTCGACAACCACAACGCCC
TTCTACACTACCCATGACGGCGACGGCGAAAAACATCACAGCGGAAAATC
ATCCGAAAATATCGCACATCCACCCTCTGCTTCTACGATGTACATGCAGT
GCGAACAATATATGGGGTGGAATACGGTACAGTATGGCACATAGACATGC
ACATATGCATGCAGACATTCGGATGCATTTGTTGCTTGCACAGCCACTAC
TGTATGGGGTAAGATTATGGAGGCATGTCACCCCGAATAAAACCGTTTCA
CAAACCGAACCGCACAACCGCTGCACGTTTAAGTGCACAACACGATACTG
TATATATATAGACTGCATTCGGAATTGTGCGGCTGAATCGCACTGTTTGT
TAACAGACTCAGGACGGGGCAACAAGAGCAAGAGGGGCGGGCTTCAATGA
CCCAATGGATAGTACAGTGTCTCGTATGCCTTGGTAGAGCCCGTTAACAG
TGGTCACGACGGAGGGAGGATATGTGACACTTTCGGATGATTTGCCACCG
TGACGTTTTCGCCGCCGCCGTGATGGATTTAGTCGCCGTGATTGGTGATG
TAGAGAAATTTTGTAGGTGTAGAAGAGGTTTCGAGGGCAACGAATTGTCC
GTCGTGGCTCTGCCTCGGGCAAATTTTGCAGCACAACATGCATGATTGTT
GCATACCAACAAAGACTAGGGCAAACACGCTAGATTCATTGGGGAAGTAT
AAATCGTAAGCGGGTATTAGAGCCAGGTTCTCCATAGAGCTACATCGGTA
GGCAATCATCTACTTATCCAACGTAGACACTTTTTAGTCGCAATGCTAAA
TGCTACTACCCCCCTCCCTGCCCGGGATCCCAGTGAAACGCCATCACCTT
GTGGACCGGCAAAAATCGTGCATCAATGATTGGCTGGGGGTCGAACTGTG
TGGCTTCCCTAAACTGTTGAAAGATCCTTTGAAAAGGTGAAGAAAACAGG
GAGATTACCACGCCGTCCTTTTCAGACACAGTGCACAGCACGAGGTGCAC
CAGAAAGCCCGAATGTTCCAAAACGGTTTACCCCCACCCGTTTTCTTCGT
TTTTTAACAGCATATTGCACCGCTGCCTACCAGCGAAGATGCCCGTGGGT
TGACCCTAACGGTGGCGCGGCGTTGGGTGACGTGTTGTACCCCAGGAGCC
ACCGCTGTCTCGCTCCGAAAACGGCGGCACGAAGGTAGCTTGGCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig3255:11572..15317+

>mRNA_H-paniculata_contig3255.8753.1 ID=mRNA_H-paniculata_contig3255.8753.1|Name=mRNA_H-paniculata_contig3255.8753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig3255:11572..15317+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGCCTTATGCCACGGAAGATGCGAGTGTTTCCGCGACGATCGCTC
CCAAGAATGGTCCCGAGACCGGTGTTGGAGGAGATTTAGGGGGGAACGAA
GAGGCCGCCCCGGCGATGCCCGCCTTATGCCACGGAAGATGCGAGTGTTT
CCGCGACGATCGCTCCCAAGAATGGTCCCGAGACCGGTGTTGGAGGAGAT
TTAGGGGGGAACGAAGAGGCCGCCCCGGCGCATATTGCACCGCTGCCTAC
CAGCGAAGATGCCCGTGGGTTGACCCTAACGGTGGCGCGGCGTTGGGTGA
CGTGTTGTACCCCAGGAGCCACCGCTGTCTCGCTCCGAAAACGGCGGCAC
GAAGGTAGCATATTGCACCGCTGCCTACCAGCGAAGATGCCCGTGGGTTG
ACCCTAACGGTGGCGCGGCGTTGGGTGACGTGTTGTACCCCAGGAGCCAC
CGCTGTCTCGCTCCGAAAACGGCGGCACGAAGGTAG
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