mRNA_H-paniculata_contig3254.8752.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3254.8752.1
Unique NamemRNA_H-paniculata_contig3254.8752.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3254.8752.1 vs. uniprot
Match: D7FQB1_ECTSI (SAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB1_ECTSI)

HSP 1 Score: 468 bits (1203), Expect = 2.370e-150
Identity = 333/602 (55.32%), Postives = 368/602 (61.13%), Query Frame = 2 
Query:  164 QQAPIMSGS--RDLLGEGTFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIKAGAVEAAVTETLDCPAHLLDMLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLACQSVQATIQAALHG--GLGLRVNTPDS----GNGGG----------YF----------------------SGSGAGAVGTPVRILSPGEGSGLSGMMNMLPP------------HGGSDFGGLDTWQAQQLQLQMQPSGHPVRRHHGGRGSDSD----------ESEIENETVSLGSIGARTPVSSTAGSPRLAVQQTSSLTASPALSAGGSTPGGDWSLFSGGFGLGMAALAE---SSSCNSTPSMTAKATPKVHFPEGMKAL----GTSAVLGLADGTETAEGGDRRDASAAATVTGVVGAPAPXXXXXXXXXXX----------ENARNHARNALANTSALEALDGD--DDKEG----------------------DIEDKVARLGKRLQAMGLGKYCSKFAENEVDLEALGLMSEGDLADIGIPKGPRLKILNAV 1660
            QQ P+ S S  R++LGEG+FMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDL SVEHAAKSVDAYVAAAPIKAGAVEAAVT+T++CP  LLD LGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLA +SV+A I  A+HG  GLGLRV+TPDS    G GG           YF                      SG+ A        ++ P    G  G  +  P                ++F  L TWQ +Q                                  +SEIE  TVSLGSIGARTPVSSTAGSPR+      S   SPALS   STP GDWSLFSGGFG+GMAAL E   S+S +STP+ TA+ TP+VHFPEG++AL    G ++     D       G    ASAA   +G       XXXXXXXXXXX          E +R  A   +     L AL+G   D +E                       DI DKVARLGK LQ MGLGKYC KFAENEVDLEALGLMSE DLADIGIPKGPRLKILNAV
Sbjct:   29 QQQPLGSSSAGREVLGEGSFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPPQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAVHGSYGLGLRVSTPDSHGSFGVGGXXXXXXXXXXXYFPDGAMSXXXXXXXXXXMRSPLVSGAVAXXXXGMHHLMLPSTAGGAGGSSHADPDLHHLAAPDYRHARDTAEFHHLATWQQEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSEIE--TVSLGSIGARTPVSSTAGSPRVV----GSYNTSPALSGTASTPVGDWSLFSGGFGIGMAALQEGESSTSRSSTPT-TARTTPRVHFPEGLRALVGGAGRASAASAGDLAVLKGSGLLSPASAADGNSGXXXXXXXXXXXXXXXXXXXXSPALTAGGEASRRMAGLPVPEAQVLSALEGQTSDGEEXXXXXXXXXXXXXXXXXXXXXXEDISDKVARLGKVLQTMGLGKYCPKFAENEVDLEALGLMSESDLADIGIPKGPRLKILNAV 623
[Close]
BLAST of mRNA_H-paniculata_contig3254.8752.1 vs. uniprot
Match: A0A835ZGS8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS8_9STRA)

HSP 1 Score: 248 bits (634), Expect = 1.720e-72
Identity = 124/150 (82.67%), Postives = 136/150 (90.67%), Query Frame = 2 
Query:  230 YSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIKAGAVEAAVTETLDCPAHLLDMLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLACQSVQATIQAA 679
            YSIKRCQGFVRCDMDIDAEVVGWVIGK+GSTIKD+K+KTGCNMWVDQRALKLTITGPD+ +VEHAAKSV+AYVAAAPIKAGAVEAAVT +LDCP HLLD+LGDR TIARIVKET AQVVVNKK+ R+IVRG   +V +AC  VQA I AA
Sbjct:   42 YSIKRCQGFVRCDMDIDAEVVGWVIGKSGSTIKDLKNKTGCNMWVDQRALKLTITGPDVRTVEHAAKSVEAYVAAAPIKAGAVEAAVTRSLDCPPHLLDVLGDRATIARIVKETRAQVVVNKKMARVIVRGGPHAVQMACGKVQAIITAA 191
[Close]
BLAST of mRNA_H-paniculata_contig3254.8752.1 vs. uniprot
Match: A0A835YT56_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT56_9STRA)

HSP 1 Score: 244 bits (624), Expect = 2.830e-68
Identity = 119/150 (79.33%), Postives = 135/150 (90.00%), Query Frame = 2 
Query:  230 YSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIKAGAVEAAVTETLDCPAHLLDMLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLACQSVQATIQAA 679
            YSIKRCQGF+RCDMDIDAEVVGWVIG+NGSTIKD+K+KTGCNMWVDQRALKLTITGPD+ +VEHAAK V+AYVAAAPIKAGAVEAAVT +L+CP HLLDMLGDR TIARIVKET AQVVVNKK+ R+I+RG+  +V +AC  +Q  I AA
Sbjct:   57 YSIKRCQGFIRCDMDIDAEVVGWVIGRNGSTIKDLKNKTGCNMWVDQRALKLTITGPDVCAVEHAAKCVEAYVAAAPIKAGAVEAAVTRSLECPPHLLDMLGDRATIARIVKETRAQVVVNKKMARVIIRGNAHAVHMACGRIQTIIAAA 206
[Close]
BLAST of mRNA_H-paniculata_contig3254.8752.1 vs. uniprot
Match: D7FHT5_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT5_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 6.460e-30
Identity = 154/510 (30.20%), Postives = 227/510 (44.51%), Query Frame = 2 
Query:  236 IKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIK---AGAVEAAVTETLDCPAHLLDMLGDR--TTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLACQSVQATI---QAALHG-GLGLRV-----NTPDSGNGGGYFSGSGAGAV--------GTPVR--ILSPGEGSGLSGMMNMLPPHGGSDFGGLDTWQAQQLQLQMQPSGHPVRRHHGGRGSDSD--ESEIENETVSLGSIGARTPVSSTAGSPRLAVQQTSSLTA--SPALSAGGSTPGGDWSLFSGGFGLGMAALAESSSCNSTPSMTAKATPKVHFPEGMKALGTSAVLGLAD--GTETAEGGDR-----RDASAAATVTGVVGAPAPXXXXXXXXXXXENARNHARNALANTSALEALDGDDDKEGDIEDKVARLGKRLQAMGLGKYCSKFAENEVDLEALGLMSEGDLADIGIPKGPRLKILNAV 1660
            ++R  GFVRC MDI  EVVGWVIG++G+ IK+MKH++GC MWVDQ+ LKL ITG D+  +  AA  V   ++ AP+    AG  +   +  ++CP HL+ +L  R  +TI RI +E+ A VV+N+K+ ++IV G  +SV L    ++  I   ++A HG GLG  V     + P    G   F   G G +        G P +   ++PGE  G+    + L   G  D G           L    +G PV    GG   D +  + ++     S                     +  + +       +  GG    G  S  SGG   G      S S   TP +  ++           ++G+  V+G       +TA G        R  ++ AT   V GA               +  N    ++   S         ++ G      A L + L  MGLG+Y     ENE+DLEA+ LM++ D  DIGIPKGPR+K+L A+
Sbjct:   25 LERFPGFVRCVMDIAPEVVGWVIGRSGAHIKEMKHRSGCGMWVDQKDLKLYITGADMPRIHAAAALVGDLISKAPVNVNSAGVEDEVTSHMIECPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLGVAMIEDVITFGRSAEHGAGLGGAVPPNFLDFPAGVAGMAEFMDDGGGGLDSFTVRSTGPPGQQPFMNPGEAGGVRMGSSPLSIPGSGDPGS---------NLSAGGAGFPVV---GGAPYDEELRKQQLRGSPASXXXXXXXXXXXXXXXXXXRPAKMEADVAGFNGKEMDCGGML--GHNSAASGGSRTG------SISSGGTPPLVGRSL----------SMGSWNVMGAPPIRVVDTAGGXXXXAPPLRLGNSPATGLSVAGA----LMNMNRLSINSDDSNGGGRSIGQASRQR------ERPGTPVGNPADLAEFLGDMGLGQYAQALTENEIDLEAVQLMADSDFQDIGIPKGPRVKLLYAL 494
[Close]
BLAST of mRNA_H-paniculata_contig3254.8752.1 vs. uniprot
Match: A0A835YRS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS0_9STRA)

HSP 1 Score: 117 bits (292), Expect = 5.990e-23
Identity = 61/127 (48.03%), Postives = 88/127 (69.29%), Query Frame = 2 
Query:  236 IKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIK---AGAVEAAVTETLDCPAHLLDMLGDR--TTIARIVKETHAQVVVNKKI 601
            +++  GFVRC +DI  EVVGWVIG++GS IK+MKH++GC MWVDQ+ LKL ITG D+  +  AA  V   ++ AP+    AG  +  V++ +DCP HL+ +L  R  +TI RI +E+ A VV+N+K+
Sbjct:  292 LEKFPGFVRCVIDIAPEVVGWVIGRSGSHIKEMKHRSGCGMWVDQKDLKLYITGTDMPRIHIAAGMVADLISKAPVNMNAAGVDDEVVSQMIDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKM 418
[Close]
BLAST of mRNA_H-paniculata_contig3254.8752.1 vs. uniprot
Match: A0A836CJQ9_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJQ9_9STRA)

HSP 1 Score: 107 bits (268), Expect = 4.010e-20
Identity = 146/518 (28.19%), Postives = 198/518 (38.22%), Query Frame = 2 
Query:  284 EVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPI---------------------------------KAGAVEAAVTETLDCPAHLLDMLGDR--TTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLACQSVQ---------------ATIQAALHGGLGLRVNTPDSGNGG------GYFSGSGAGAVGTPVRILSPGEGSGLSGMMNMLPPHGGSDFGGLDTWQAQQLQLQMQPSGHPVRRHHGGRGSDSDESEIENETVSLGSIGARTPVSSTAGSPRLAVQQTSSLTASPALSAGGSTPGGDWSLFSGGFGLGMAALAESSSCNSTPSMTAKATPKVHFPEGMKALGTSAVLGLADGTETAEGGDRRDASAAATVTGVVGAPAPXXXXXXXXXXXENARNHARNALANTSALEALDGDDDKEGDIEDKVARLGKRLQAMGLGKYCSKFAENEVDLEALGLMSEGDLADIGIPKGPRLKILNAVSRG 1669
            EVVGWVIG++GS IK+MKH++GC MWVDQ+ LKL ITG D+  +  AA  V   ++  P                                   AG  +  V++ +DCP HL+ +L  R  +TI RI +E+ A VV+N+K+ ++IV G  +SV LA   ++               AT  AA H    L+    D    G      G   G G    G  V        S +S        HG    GG     + +  + + P     RR   G     D              GA  P +S       A QQ SSL     + AG  T G                 A   +  + P +    T +    +  +   T+  +  A G  T EG   R A    T T   G  +P             A + A   L        +          ED +  +G      GLG Y S F ENE+DLEA+ LM   D  +IGIPKGP  KI  A+  G
Sbjct:  318 EVVGWVIGRSGSHIKEMKHRSGCGMWVDQKDLKLYITGTDMPRIHIAAGMVADLISKVPYVPSFKGMYRAYQXXXXXXXXXXXXXXXXXVNVSAAGVEDEVVSQMMDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLAVAMIEDVFTFGKAADEQHHHATTMAAGHHTFPLQGTAQDYMEYGSDILDYGLVGGPGNAGGGDDVFRPRSVSASAVSPFTYQSVQHGAGRMGGSPYGASYERDVPLGP--REGRRFEPGHAQGHDVRPAP---------GAFEPQASPQSMQPPAPQQPSSL--QHRVQAGRPTSGXXXXX-----------XARHPNPLAAPWVPQVCTHR-ELLQMYECSATANAVANATGERTIEGHMLRMAGVG-TGTRRGGGASPL------------ALSDAAKPLLTAPPSVCM----------EDYLEAVGS-----GLGHYASVFKENEIDLEAMRLMGARDFVEIGIPKGPAAKIAYALREG 782
[Close]
BLAST of mRNA_H-paniculata_contig3254.8752.1 vs. uniprot
Match: A0A6H5JET1_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET1_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.370e-13
Identity = 65/201 (32.34%), Postives = 100/201 (49.75%), Query Frame = 2 
Query:  332 MKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIK---AGAVEAAVTETLDCPAHLLDMLGDR--TTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLACQSVQATI---QAALHGG-----------------LGLRVNTPDSGNGGGYFSGSGAGAVGTPVRILSPGEGSGLSGMMNMLPPHGGSDFG 859
            ++H++GC MWVDQ+ LKL ITG D+  +  AA  V   ++ AP+    AG  +   +  ++CP HL+ +L  R  +TI RI +E+ A VV+N+K+ ++IV G  +SV L    ++  I   ++A HG                   G+     D G G   F+    G  G P  ++ PGE  G+    + L  HG  D G
Sbjct:   59 LRHRSGCGMWVDQKDLKLYITGADMPRIHAAAALVGDLISKAPVNVNSAGVEDEVTSHMIECPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLGVAMIEDVITFGRSAEHGAGPGGAVPPNFLDFPAGVAGMAEFMDDGGGGLDSFTVRPTGPPGQPPFMI-PGEAGGVHMGSSPLSIHGSEDPG 258
[Close]
BLAST of mRNA_H-paniculata_contig3254.8752.1 vs. uniprot
Match: A0A382VC15_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382VC15_9ZZZZ)

HSP 1 Score: 61.2 bits (147), Expect = 5.460e-7
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 2 
Query: 1517 LQAMGLGKYCSKFAENEVDLEALGLMSEGDLADIGIPKGPRLKILNAV 1660
            L  +GL KY   FAENE+DL+A+GL+SE D  ++G+P GPR K+L AV
Sbjct:    9 LDNLGLSKYADVFAENEIDLDAVGLLSEEDFKELGLPMGPRRKLLAAV 56
[Close]
BLAST of mRNA_H-paniculata_contig3254.8752.1 vs. uniprot
Match: A0A1X7U136_AMPQE (SAM domain-containing protein n=3 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7U136_AMPQE)

HSP 1 Score: 63.9 bits (154), Expect = 1.770e-6
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 2 
Query: 1505 LGKRLQAMGLGKYCSKFAENEVDLEALGLMSEGDLADIGIPKGPRLKILNAVSR 1666
            L   L  +GL KY + F +NE+D  AL LMSE D A++GIPKGPR+K+LNA+ R
Sbjct: 2689 LSGLLDKLGLSKYHNLFQKNEIDHHALLLMSEKDFAEVGIPKGPRVKLLNAIGR 2742
[Close]
BLAST of mRNA_H-paniculata_contig3254.8752.1 vs. uniprot
Match: A0A7S2PSC4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PSC4_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.600e-6
Identity = 32/51 (62.75%), Postives = 35/51 (68.63%), Query Frame = 2 
Query: 1517 LQAMGLGKYCSKFAENEVDLEALGLMSEGDLADIGIPKGPRLKILNAVSRG 1669
            LQ + L KY     ENEVDL  L LM E DLA++GIPKGPRLKIL A S G
Sbjct: 1079 LQTLNLSKYAPILQENEVDLAVLPLMKEVDLAELGIPKGPRLKILRASSSG 1129
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3254.8752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB1_ECTSI2.370e-15055.32SAM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZGS8_9STRA1.720e-7282.67Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YT56_9STRA2.830e-6879.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FHT5_ECTSI6.460e-3030.20SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YRS0_9STRA5.990e-2348.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJQ9_9STRA4.010e-2028.19SAM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5JET1_9PHAE2.370e-1332.34SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A382VC15_9ZZZZ5.460e-756.25Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A1X7U136_AMPQE1.770e-655.56SAM domain-containing protein n=3 Tax=Amphimedon q... [more]
A0A7S2PSC4_9STRA2.600e-662.75Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3254contigH-paniculata_contig3254:8097..12516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score63.5
Seed ortholog evalue3.5e-07
Seed eggNOG ortholog400682.PAC_15712215
Preferred nameANKRD17
KEGG koko:K16726
Hectar predicted targeting categoryother localisation
GOsGO:0000785,GO:0001568,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0001817,GO:0001819,GO:0001944,GO:0001955,GO:0002376,GO:0002682,GO:0002684,GO:0002697,GO:0002699,GO:0002831,GO:0002833,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005694,GO:0005737,GO:0006275,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0006996,GO:0007005,GO:0007010,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007346,GO:0007399,GO:0007423,GO:0007492,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009887,GO:0009888,GO:0009889,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0010506,GO:0010507,GO:0010556,GO:0010564,GO:0010639,GO:0010646,GO:0010647,GO:0010821,GO:0010823,GO:0010927,GO:0010941,GO:0012505,GO:0016020,GO:0016043,GO:0019219,GO:0019222,GO:0019730,GO:0019899,GO:0019900,GO:0019901,GO:0021700,GO:0022008,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030036,GO:0030154,GO:0030182,GO:0030239,GO:0031032,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031430,GO:0031672,GO:0031674,GO:0031965,GO:0031967,GO:0031975,GO:0032101,GO:0032103,GO:0032501,GO:0032502,GO:0032989,GO:0033043,GO:0039531,GO:0039533,GO:0039535,GO:0040011,GO:0042692,GO:0042742,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043122,GO:0043123,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043292,GO:0043900,GO:0043902,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0045087,GO:0045088,GO:0045089,GO:0045214,GO:0045595,GO:0045596,GO:0045787,GO:0045931,GO:0046530,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048592,GO:0048646,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050688,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051093,GO:0051128,GO:0051129,GO:0051146,GO:0051147,GO:0051148,GO:0051150,GO:0051151,GO:0051171,GO:0051239,GO:0051240,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0055001,GO:0055002,GO:0060255,GO:0060361,GO:0060548,GO:0061061,GO:0065007,GO:0070925,GO:0071695,GO:0071840,GO:0072358,GO:0072359,GO:0080090,GO:0080134,GO:0090068,GO:0090596,GO:0097435,GO:0098542,GO:0099080,GO:0099081,GO:0099512,GO:1900087,GO:1900245,GO:1900246,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902531,GO:1902533,GO:1902806,GO:1902808,GO:1903146,GO:1903147,GO:2000045,GO:2000112
EggNOG free text desc.positive regulation of MDA-5 signaling pathway
EggNOG OGs38I05@33154,3BHRH@33208,COG0666@1,KOG0504@2759,KOG4369@1,KOG4369@2759
Ec32 ortholog descriptionK Homology domain
Ec32 orthologEc-01_006780.1
COG Functional cat.T
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size2804
Cds size1662
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3254.8752.1prot_H-paniculata_contig3254.8752.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3254 9184..12461 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930005.2558546-UTR-H-paniculata_contig3254:8096..91831622930005.2558546-UTR-H-paniculata_contig3254:8096..9183Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3254 8097..9183 -
1691481107.14725-UTR-H-paniculata_contig3254:8096..91831691481107.14725-UTR-H-paniculata_contig3254:8096..9183Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3254 8097..9183 -
1622930005.301291-UTR-H-paniculata_contig3254:12461..125161622930005.301291-UTR-H-paniculata_contig3254:12461..12516Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3254 12462..12516 -
1691481107.185444-UTR-H-paniculata_contig3254:12461..125161691481107.185444-UTR-H-paniculata_contig3254:12461..12516Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3254 12462..12516 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930005.2715557-CDS-H-paniculata_contig3254:9183..105861622930005.2715557-CDS-H-paniculata_contig3254:9183..10586Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3254 9184..10586 -
1691481107.1603267-CDS-H-paniculata_contig3254:9183..105861691481107.1603267-CDS-H-paniculata_contig3254:9183..10586Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3254 9184..10586 -
1622930005.2869346-CDS-H-paniculata_contig3254:12202..124611622930005.2869346-CDS-H-paniculata_contig3254:12202..12461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3254 12203..12461 -
1691481107.1725986-CDS-H-paniculata_contig3254:12202..124611691481107.1725986-CDS-H-paniculata_contig3254:12202..12461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3254 12203..12461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3254.8752.1

>prot_H-paniculata_contig3254.8752.1 ID=prot_H-paniculata_contig3254.8752.1|Name=mRNA_H-paniculata_contig3254.8752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=554bp
MHIMDDGGFAASAHHHPAVSSRSSLMARSSGTGGGLQQAPIMSGSRDLLG
EGTFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCN
MWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIKAGAVEAAVTETLD
CPAHLLDMLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLACQS
VQATIQAALHGGLGLRVNTPDSGNGGGYFSGSGAGAVGTPVRILSPGEGS
GLSGMMNMLPPHGGSDFGGLDTWQAQQLQLQMQPSGHPVRRHHGGRGSDS
DESEIENETVSLGSIGARTPVSSTAGSPRLAVQQTSSLTASPALSAGGST
PGGDWSLFSGGFGLGMAALAESSSCNSTPSMTAKATPKVHFPEGMKALGT
SAVLGLADGTETAEGGDRRDASAAATVTGVVGAPAPPPSPASSMTSGENA
RNHARNALANTSALEALDGDDDKEGDIEDKVARLGKRLQAMGLGKYCSKF
AENEVDLEALGLMSEGDLADIGIPKGPRLKILNAVSRGGGGSQQQQQQQS
ESC*
back to top

mRNA from alignment at H-paniculata_contig3254:8097..12516-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3254.8752.1 ID=mRNA_H-paniculata_contig3254.8752.1|Name=mRNA_H-paniculata_contig3254.8752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4420bp|location=Sequence derived from alignment at H-paniculata_contig3254:8097..12516- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGGGGGTGTATGTCCCGCAGCAGCAGTGGACTGGCGCGGGAGGCGGAG
GACAGATGCACATCATGGACGATGGGGGATTCGCCGCCTCCGCCCACCAC
CACCCCGCGGTGAGCTCTCGGAGTTCGCTGATGGCTCGTTCAAGCGGAAC
CGGCGGGGGACTTCAGCAGGCACCCATCATGAGTGGGAGCAGGGACTTAC
TTGGGGAGGGCACGTTCATGGGTCGTGGGTACAGCATCAAGCGGTGTCAG
GGGTTCGTGAGGTGCGACATGGACATCGACGCTGAGGTTGTCGGATGGGT
CATCGGAAAGAACGGTGAGTGTCTGTTTTCTCTACTCTTTTTTCCATTGG
AGATGGATGCTGAAAGGCACGGAATTTGTATGGTGTTTTTGTGGGAAATG
CTTCATCCAGGTGACGCCTGCTGCTACGGCAGAAACATAGAATTATGGAC
CGCACAGCGGAGAGATACATGCAAGCAATGACGCATTAATAATTTTTAAC
TTGACGCTCATGCTTGTCTAACGTGAGTACTTCTAGCTTCCGTGAGCCTT
CGTGGTTCCTTGCCTAGGATGCCCCGGGTTGTTTGTGAACACCAGACGAC
CATCTGTCGATGTGTTGTGTTTCCTTCAAATACAAAAAAAAGCGCGGAGG
AAATTGGAAAAGCGCGCTTGGTTGGGGGGAGCTGTTTCTTTTAGCGCGGT
TTTTGCTCGTCAATGACACCACTGAATGCAGAACATTCGCACCAGCACAG
CCAATTTCTTTCGACCAGTCGGGTTCCAGGCAAGGGTGAGAGAGAGAGCC
GTCACTCAAAACTACTGTCGTTAGTCATCCGCTATCCTGTCTATTATTGT
TGAGCCTTGCGCGGTGGTCACGACTTCAACTCCACATGAGATTGTTATTT
ACCAATAATAGTAAGTGCGAATGGAGTGCATTTTCACATGAAACCAGTGC
GGAGAATTTGTGCGAGTTGCCTTTGTACGTTTTCACCAGTGGTGAGCCAC
GTATTACGCACCACACGCTGTTACGAAACTGCGGTACGGATGGTTGTAGA
GGTCACTTCTGTGCGTGCTCTCGGCATCATGCCACAGTTTACTGACCGTG
CGGTCTTTCATTGTGTTTTATCTGGTCAAATAAGCCCACTGCGCTGTCTT
TCTTCGTTTTTTTTTTTTTGCATGGCGTGATTCAGCGTTTATATATGCCC
AAGGGTCGGTTGAACTGTGAGCCTTTCTTTCATTTGAAGCTCCCAACTCT
ATTTTATGCGTCCCACATGCGACCGATGAGCGCCCGGTTCCTATCTGTTG
TTTTAGCAACATTTTGTACCGTATTCCCTCTGGAGTCACAGATTAAGATG
GGTATTTTCTCCGCCTTAGCTCCCGTGCGTTGAGTTATTTTTTTTCTCGA
GTACGTTCATTATCGTCTATGGCAACTACACTGACGAAGTCGCTGAAACG
TTGCAGTAATTATTATTCATCGTTGTTGAGCCCAAGACTGAACCTACTGA
CTGGACTGTTCAGCAAGATACGTAGTTTGTGCTGATTAAAGGAGGGCGTC
AACAACGGTCTCTCCTACCATGTTGGAGTATGGTTGGTTATGCTCGTGTT
TCTTGGTCTTGGGAGATAGCATGAACTGGTGAGGGAGGGGTCGATCAACG
GTCCTGTGAATAACAGCCCCGACACAAGCCCAGCCTCGCAATGAGGGTAT
TTGTTCCTCCGATAGATGACGGTCCTTCTCCGATACCCTAGCCTGACCAG
CGGTTGCGTTGTTCAACCTTTTTTATGTACGGCCTGTGTCGAATTCACAC
TTGCTGTGGTTCTTTTACTGTTTTTGGTATTACTGTAGTCCTGTGATGAT
CGATGGTTATGTTATGTAAACCTTTCGCTGCCGCTGTCCCCGCGTCTCGT
AATTCCCTGCGAATTGTCTCATCCCAATAGGTAGTACCATCAAGGACATG
AAGCACAAGACGGGCTGCAACATGTGGGTGGACCAACGTGCCCTGAAGCT
GACTATCACTGGCCCCGATCTTTCCTCAGTGGAACACGCCGCCAAGTCCG
TTGATGCATATGTTGCGGCCGCACCGATTAAGGCGGGGGCCGTAGAAGCG
GCGGTTACCGAGACGTTGGACTGCCCCGCCCATCTCCTCGATATGCTTGG
CGACCGTACCACTATCGCCCGCATCGTCAAGGAGACCCATGCACAAGTAG
TCGTCAACAAGAAGATCGGGCGCATTATTGTGCGCGGTGACCACCGGTCG
GTCGACCTCGCCTGCCAGAGTGTTCAGGCAACAATCCAGGCGGCTCTTCA
CGGTGGGCTGGGTTTACGTGTGAACACACCCGACAGCGGAAATGGTGGCG
GGTACTTCTCCGGCAGTGGCGCGGGAGCCGTCGGAACGCCGGTGCGGATC
CTATCCCCTGGAGAAGGGAGTGGATTGAGCGGCATGATGAACATGTTGCC
CCCCCACGGCGGTTCCGATTTCGGCGGCCTGGACACGTGGCAGGCGCAGC
AGCTTCAGCTGCAGATGCAGCCTTCGGGTCACCCTGTGCGCCGCCACCAC
GGCGGCCGCGGTTCGGATTCTGACGAGTCAGAGATCGAGAACGAGACTGT
GTCTCTGGGCTCGATCGGCGCCCGCACGCCGGTCAGCTCAACTGCAGGTT
CGCCTCGTCTTGCCGTCCAACAGACGTCGTCTCTGACCGCCAGCCCAGCG
CTCTCTGCCGGCGGGTCTACTCCCGGCGGCGACTGGTCCCTTTTCTCGGG
TGGATTCGGCCTGGGAATGGCTGCATTGGCAGAGAGCTCGTCTTGTAACA
GCACGCCGAGCATGACCGCAAAGGCTACCCCCAAGGTTCACTTCCCCGAA
GGGATGAAGGCGTTGGGCACGAGCGCCGTGCTGGGCCTCGCGGACGGAAC
GGAAACGGCAGAGGGCGGGGACAGGAGAGATGCGAGCGCTGCCGCCACTG
TGACTGGTGTTGTCGGCGCGCCTGCACCCCCCCCTTCCCCTGCGTCGTCC
ATGACCAGTGGCGAAAATGCCCGCAACCATGCGCGCAACGCGTTGGCCAA
CACAAGCGCGCTCGAGGCCTTGGATGGCGATGATGATAAGGAGGGTGACA
TCGAGGACAAGGTTGCGCGCCTCGGGAAGCGTCTGCAGGCTATGGGACTG
GGCAAGTATTGTTCTAAGTTCGCAGAGAACGAGGTGGATCTAGAGGCACT
GGGTCTTATGAGCGAGGGCGACCTTGCGGACATTGGGATCCCAAAGGGCC
CCAGGCTGAAGATCCTCAATGCCGTATCTCGCGGCGGTGGCGGCAGCCAG
CAGCAACAGCAACAGCAAAGTGAGTCCTGCTAAATTTATTTTCCATCATG
ATGGCGGCCAAGGTGGAAAACATCGGTCAAGGTGGATACTGTAATGCATG
TGATGGATCACCGTGACCCCTCTCTCCATTCTGTGCTGATGCGGATGGGA
TGGCTAGGCGCGGCATTTCGGAGTTCCGCTGCGTGGGCCTGTGGGAGGTG
GAAAGGACCGGACCCGGGGCAGGAAAAAGAGCATGGAGAATGGTTGGTTA
TGTGTGGCAATGCCTTTGCCGTTGCCGTGTTGTCGCGTGTCGGCCGCGAG
AAGCCGCCTCGCATATCCGATTTTTTCAGCATGTTAACCATTTTTTTGAC
GGCATCTTTTTTATGCAAAGTCTGGGGTATGTTGTTCGTTTATTTTGTTT
TATTTTTCTCGAAGCTGATGAACAAGATGAGAGGAAAAACAAGAGAAGAG
AGTGTTGTGTGGGTCTCTCGGGATTCCCTGTTTTTATTTTTTTTATGTGG
GGGAAGGCCGCAGGTTGGCGCTGCGGTTGGAACCCTATAGCTGGAACGCC
TAGTCATTATAAAGCATGATCGCTGTGTGGTTGCAGTTTTCGTACGGGGA
GAGCGTACTTCGCGTTGTCTCCCTTATTATTTTTGATTGGATATTTTGCA
GTTACAACGTGGTTTTTCCGCCCTTGGCTATCCCTGTCTGGGGACAAAGC
TTTGCAGGTCAGGAAATTTGGAGAGACAAAATTAGTACAGGAGTATTCGG
TATTCGTAGGGTAGTAAGTAGTAGCGCGTTGCGCATCCCGGTCCCGACAC
CGTTCCCGCCTGAGGCGCAGGCTGAAGGAGACAGACAGACTTGACAGTAG
TTCGAAAGCGGCAGCCGATAGATGGCGGTAGTTTTTACTTGTATAATAAA
TACTCATCGGTTGCATCGGTTCCAAACACATCCAGTTACATTCCGAGATT
TACTTTGTATTCGTGTCTGGGATCTGAAAATACAAACGTTATCTGTGTTG
GTTATATTTTAGGGAATGCGCGAGTACGGGGCCAGCATTGGTTGCCTCGT
AGCGCTTTGTAAACCAGTATGGAAGTGACCCTTTACGCCGCCCAATGTTA
CACGCTAGTTGGTAGTAGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3254:8097..12516-

>mRNA_H-paniculata_contig3254.8752.1 ID=mRNA_H-paniculata_contig3254.8752.1|Name=mRNA_H-paniculata_contig3254.8752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3324bp|location=Sequence derived from alignment at H-paniculata_contig3254:8097..12516- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACATCATGGACGATGGGGGATTCGCCGCCTCCGCCCACCACCACCC
CGCGGTGAGCTCTCGGAGTTCGCTGATGGCTCGTTCAAGCGGAACCGGCG
GGGGACTTCAGCAGGCACCCATCATGAGTGGGAGCAGGGACTTACTTGGG
GAGGGCACGTTCATGGGTCGTGGGTACAGCATCAAGCGGTGTCAGGGGTT
CGTGAGGTGCGACATGGACATCGACGCTGAGGTTGTCGGATGGGTCATCG
GAAAGAACGATGCACATCATGGACGATGGGGGATTCGCCGCCTCCGCCCA
CCACCACCCCGCGGTGAGCTCTCGGAGTTCGCTGATGGCTCGTTCAAGCG
GAACCGGCGGGGGACTTCAGCAGGCACCCATCATGAGTGGGAGCAGGGAC
TTACTTGGGGAGGGCACGTTCATGGGTCGTGGGTACAGCATCAAGCGGTG
TCAGGGGTTCGTGAGGTGCGACATGGACATCGACGCTGAGGTTGTCGGAT
GGGTCATCGGAAAGAACGGTAGTACCATCAAGGACATGAAGCACAAGACG
GGCTGCAACATGTGGGTGGACCAACGTGCCCTGAAGCTGACTATCACTGG
CCCCGATCTTTCCTCAGTGGAACACGCCGCCAAGTCCGTTGATGCATATG
TTGCGGCCGCACCGATTAAGGCGGGGGCCGTAGAAGCGGCGGTTACCGAG
ACGTTGGACTGCCCCGCCCATCTCCTCGATATGCTTGGCGACCGTACCAC
TATCGCCCGCATCGTCAAGGAGACCCATGCACAAGTAGTCGTCAACAAGA
AGATCGGGCGCATTATTGTGCGCGGTGACCACCGGTCGGTCGACCTCGCC
TGCCAGAGTGTTCAGGCAACAATCCAGGCGGCTCTTCACGGTGGGCTGGG
TTTACGTGTGAACACACCCGACAGCGGAAATGGTGGCGGGTACTTCTCCG
GCAGTGGCGCGGGAGCCGTCGGAACGCCGGTGCGGATCCTATCCCCTGGA
GAAGGGAGTGGATTGAGCGGCATGATGAACATGTTGCCCCCCCACGGCGG
TTCCGATTTCGGCGGCCTGGACACGTGGCAGGCGCAGCAGCTTCAGCTGC
AGATGCAGCCTTCGGGTCACCCTGTGCGCCGCCACCACGGCGGCCGCGGT
TCGGATTCTGACGAGTCAGAGATCGAGAACGAGACTGTGTCTCTGGGCTC
GATCGGCGCCCGCACGCCGGTCAGCTCAACTGCAGGTTCGCCTCGTCTTG
CCGTCCAACAGACGTCGTCTCTGACCGCCAGCCCAGCGCTCTCTGCCGGC
GGGTCTACTCCCGGCGGCGACTGGTCCCTTTTCTCGGGTGGATTCGGCCT
GGGAATGGCTGCATTGGCAGAGAGCTCGTCTTGTAACAGCACGCCGAGCA
TGACCGCAAAGGCTACCCCCAAGGTTCACTTCCCCGAAGGGATGAAGGCG
TTGGGCACGAGCGCCGTGCTGGGCCTCGCGGACGGAACGGAAACGGCAGA
GGGCGGGGACAGGAGAGATGCGAGCGCTGCCGCCACTGTGACTGGTGTTG
TCGGCGCGCCTGCACCCCCCCCTTCCCCTGCGTCGTCCATGACCAGTGGC
GAAAATGCCCGCAACCATGCGCGCAACGCGTTGGCCAACACAAGCGCGCT
CGAGGCCTTGGATGGCGATGATGATAAGGAGGGTGACATCGAGGACAAGG
TTGCGCGCCTCGGGAAGCGTCTGCAGGCTATGGGACTGGGCAAGTATTGT
TCTAAGTTCGCAGAGAACGAGGTGGATCTAGAGGCACTGGGTCTTATGAG
CGAGGGCGACCTTGCGGACATTGGGATCCCAAAGGGCCCCAGGCTGAAGA
TCCTCAATGCCGTATCTCGCGGCGGTGGCGGCAGCCAGCAGCAACAGCAA
CAGCAAAGTGAGTCCTGCTAAGTAGTACCATCAAGGACATGAAGCACAAG
ACGGGCTGCAACATGTGGGTGGACCAACGTGCCCTGAAGCTGACTATCAC
TGGCCCCGATCTTTCCTCAGTGGAACACGCCGCCAAGTCCGTTGATGCAT
ATGTTGCGGCCGCACCGATTAAGGCGGGGGCCGTAGAAGCGGCGGTTACC
GAGACGTTGGACTGCCCCGCCCATCTCCTCGATATGCTTGGCGACCGTAC
CACTATCGCCCGCATCGTCAAGGAGACCCATGCACAAGTAGTCGTCAACA
AGAAGATCGGGCGCATTATTGTGCGCGGTGACCACCGGTCGGTCGACCTC
GCCTGCCAGAGTGTTCAGGCAACAATCCAGGCGGCTCTTCACGGTGGGCT
GGGTTTACGTGTGAACACACCCGACAGCGGAAATGGTGGCGGGTACTTCT
CCGGCAGTGGCGCGGGAGCCGTCGGAACGCCGGTGCGGATCCTATCCCCT
GGAGAAGGGAGTGGATTGAGCGGCATGATGAACATGTTGCCCCCCCACGG
CGGTTCCGATTTCGGCGGCCTGGACACGTGGCAGGCGCAGCAGCTTCAGC
TGCAGATGCAGCCTTCGGGTCACCCTGTGCGCCGCCACCACGGCGGCCGC
GGTTCGGATTCTGACGAGTCAGAGATCGAGAACGAGACTGTGTCTCTGGG
CTCGATCGGCGCCCGCACGCCGGTCAGCTCAACTGCAGGTTCGCCTCGTC
TTGCCGTCCAACAGACGTCGTCTCTGACCGCCAGCCCAGCGCTCTCTGCC
GGCGGGTCTACTCCCGGCGGCGACTGGTCCCTTTTCTCGGGTGGATTCGG
CCTGGGAATGGCTGCATTGGCAGAGAGCTCGTCTTGTAACAGCACGCCGA
GCATGACCGCAAAGGCTACCCCCAAGGTTCACTTCCCCGAAGGGATGAAG
GCGTTGGGCACGAGCGCCGTGCTGGGCCTCGCGGACGGAACGGAAACGGC
AGAGGGCGGGGACAGGAGAGATGCGAGCGCTGCCGCCACTGTGACTGGTG
TTGTCGGCGCGCCTGCACCCCCCCCTTCCCCTGCGTCGTCCATGACCAGT
GGCGAAAATGCCCGCAACCATGCGCGCAACGCGTTGGCCAACACAAGCGC
GCTCGAGGCCTTGGATGGCGATGATGATAAGGAGGGTGACATCGAGGACA
AGGTTGCGCGCCTCGGGAAGCGTCTGCAGGCTATGGGACTGGGCAAGTAT
TGTTCTAAGTTCGCAGAGAACGAGGTGGATCTAGAGGCACTGGGTCTTAT
GAGCGAGGGCGACCTTGCGGACATTGGGATCCCAAAGGGCCCCAGGCTGA
AGATCCTCAATGCCGTATCTCGCGGCGGTGGCGGCAGCCAGCAGCAACAG
CAACAGCAAAGTGAGTCCTGCTAA
back to top