mRNA_H-paniculata_contig3254.8751.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3254.8751.1 vs. uniprot
Match: D7FQB2_ECTSI (Similar to ATP binding / alanine-tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB2_ECTSI) HSP 1 Score: 218 bits (554), Expect = 3.250e-67 Identity = 122/238 (51.26%), Postives = 154/238 (64.71%), Query Frame = 1
Query: 1 GIINCGSWTMHVDMVRDIGGLIHHFGKPSGAPPSVCTPAGESVTLTLDAAKREYHAALHSAGHAIDAAVAAVIGRGVLQPLKGYHFEDSPYVEYHGKLPDGLEKEVLIKKMNEELENLVAADLETQVEVLDP-----ACSSSISSIYDFSSQLVCGSAEDDV-----RSGDMNNTEALGSGAVVGHGKHGMASRIVTIGGLACPCGGTHVQSTRQLKGTVVTKVKAKKGTLRVSYTLS 684
G I CG T+ V VRD+GG+I+H+G SG P AG +L LD+AKR HAALHSAGHA+D AV +G GV PLKGYHF+DSPYVEY G LP GLEK+ I+K N EL+ LV A++ET V++ D A SSS SS + S+ G ++V R G + S K+G A+R VT+ GL+CPCGGTHV+STR+++G +TKVKAKKGTLRVSYTL+
Sbjct: 47 GTITCGDCTVPVSKVRDVGGVIYHYGTMSGTP-QPRLEAGRPASLALDSAKRLRHAALHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETMVKMADQEHGDEAPSSSSSSAQEGPSRGAAGRGREEVTVVAERGGRGGRGKVPASSTAAAATKYGAATRTVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLA 283
BLAST of mRNA_H-paniculata_contig3254.8751.1 vs. uniprot
Match: A0A7S1TVS7_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVS7_9STRA) HSP 1 Score: 129 bits (325), Expect = 5.310e-33 Identity = 88/233 (37.77%), Postives = 123/233 (52.79%), Query Frame = 1
Query: 1 GIINCGSWTMHVDMVRDIGGLIHHFGKPSG----APPSVCTPAGESVTLTLDAAKREYHAALHSAGHAIDAAVAAVIGRGVLQPLKGYHFEDSPYVEYHGKLPDGLEKEVLIKKMNEELENLVAADLETQVEVLDPACSSSISSIYDFSSQLVCGSAEDDVRSGDMNNTEALGSGAVVGHGKHGMASRIVTI-GGLACPCGGTHVQSTRQLKGTVVTKVKAKKGTLRVSYTLS 684
G I V VR G +HHFG G AP + AG +V L++D KR HA HSAGHA+D AVA + G + KGYHF D PYVEY GKL + KE ++ +NE++ +++ D+ T+V L P ++ CG+ + D ++ A R+VT+ GG CPCGGTHV+ST +L G VTKVK+KKG ++VSY+++
Sbjct: 82 GTITADGAVFEVTGVRSAGDAVHHFGSFRGGDGDAPAAFA--AGAAVHLSVDEVKRVAHARCHSAGHALDVAVARIFGEDWVAG-KGYHFLDGPYVEYIGKLAPEM-KETIVDTLNEKIAEVLSEDIPTEVLYLSPE-----------EAKAACGTPD-----ADFSHITAP-------------TIRVVTVAGGGTCPCGGTHVRSTAELGGVTVTKVKSKKGRIKVSYSVT 281
BLAST of mRNA_H-paniculata_contig3254.8751.1 vs. uniprot
Match: A0A6H5JDI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI3_9PHAE) HSP 1 Score: 118 bits (296), Expect = 1.480e-30 Identity = 58/93 (62.37%), Postives = 70/93 (75.27%), Query Frame = 1
Query: 115 AGESVTLTLDAAKREYHAALHSAGHAIDAAVAAVIGRGVLQPLKGYHFEDSPYVEYHGKLPDGLEKEVLIKKMNEELENLVAADLETQVEVLD 393
AG V+L LD+AKR HA LHSAGHA+D AVA +G GV PLKGYHF+DSPYVEY G LP GLEK+ I+K N EL+ LV A++ET V++ D
Sbjct: 11 AGRPVSLALDSAKRLRHAVLHSAGHAVDKAVAGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVVANMETVVKMAD 103
BLAST of mRNA_H-paniculata_contig3254.8751.1 vs. uniprot
Match: A0A4D9CZR6_9STRA (AA_TRNA_LIGASE_II_ALA domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZR6_9STRA) HSP 1 Score: 123 bits (308), Expect = 1.720e-30 Identity = 87/231 (37.66%), Postives = 124/231 (53.68%), Query Frame = 1
Query: 25 TMHVDMVRDIG--GLIHHFG-----KPSGAPPSVCTP--AGESVTLTLDAAKREYHAALHSAGHAIDAAVAAVIGRGV-LQPLKGYHFEDSPYVEYHGKLP-DGLEKEVLIKKMNEELENLVAADLETQVEVLDPACSSSISSIYDFSSQLVCGSAEDDVRSGDMNNTEALGSGAVVGHGKHGMASRIVTIGGLACPCGGTHVQSTRQLKGTVVTKVKAKKGTLRVSYTLS 684
T VD VR +G +I+H+G + C P AGE V L +DAA+R HA LHSAGHA+D AV+ G+ L+P KGYHFED P VEY GKLP D E LI+ + +++ L+ D+ T++ A ++S+ SG +N+ V H R+V++GG CPCGGTHV+ST++L G +T++K KK ++SY +S
Sbjct: 76 TFFVDNVR-VGENAIIYHYGIFKHEMSENEDGARCVPFRAGEKVKLEIDAARRRLHARLHSAGHALDV---AVLRLGLELRPTKGYHFEDHPSVEYQGKLPADKGSSERLIEALTLKIQELIEEDIATELYSTSKAEAASM-------------------LSGGVND---------VAHFPEEAQVRLVSVGGNICPCGGTHVKSTKELGGVEITRIKTKKNVTKISYRIS 274
BLAST of mRNA_H-paniculata_contig3254.8751.1 vs. uniprot
Match: A0A835Z9X7_9STRA (Alanyl-tRNA editing protein AlaX-M-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9X7_9STRA) HSP 1 Score: 118 bits (296), Expect = 2.490e-29 Identity = 82/214 (38.32%), Postives = 107/214 (50.00%), Query Frame = 1
Query: 43 VRDIGGLIHHFGKPSGAPPSVCTPAGESVTLTLDAAKREYHAALHSAGHAIDAAVAAVIGRGVLQPLKGYHFEDSPYVEYHGKLPDGLEKEVLIKKMNEELENLVAADLETQVEVLDPACSSSISSIYDFSSQLVCGSAEDDVRSGDMNNTEALGSGAVVGHGKHGMASRIVTIGGLACPCGGTHVQSTRQLKGTVVTKVKAKKGTLRVSYTLS 684
V+ G +I HFG+ + T G+ V ++D +R A LHSAGHA+DAAV G L+P KGYHFED PYVEY G L ++ L+ K+N EL L+ A +ET V +EA R+V++GG ACPCGGTHV+ST +L+G VTK KAK G LRVSYT++
Sbjct: 63 VKADGDVILHFGQHGEGDKKLQT--GDEVEASIDLQRRLQLARLHSAGHALDAAVRNA-GFAALKPTKGYHFEDGPYVEYEGALSAD-DRATLVDKLNAELALLIEAAIETAVR-----------------------------------QSEA--------------GLRVVSVGGCACPCGGTHVRSTAELRGLRVTKAKAKSGRLRVSYTIA 223
BLAST of mRNA_H-paniculata_contig3254.8751.1 vs. uniprot
Match: L8GVN5_ACACA (Threonine/alanine tRNA ligase subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GVN5_ACACA) HSP 1 Score: 116 bits (291), Expect = 3.780e-28 Identity = 78/209 (37.32%), Postives = 107/209 (51.20%), Query Frame = 1
Query: 58 GLIHHFGKPSGAPPSVCTPAGESVTLTLDAAKREYHAALHSAGHAIDAAVAAVIGRGVLQPLKGYHFEDSPYVEYHGKLPDGLEKEVLIKKMNEELENLVAADLETQVEVLDPACSSSISSIYDFSSQLVCGSAEDDVRSGDMNNTEALGSGAVVGHGKHGMASRIVTI-GGLACPCGGTHVQSTRQLKGTVVTKVKAKKGTLRVSYTL 681
G+I H G + A AG+ V L +D AKR HA LHSAGH +D AVA + L P KGYHF D+PYVEY G +++ +K++ +E L+A E V+V+ + +CGSA D N TE + R+VT+ L CPCGGTHVQ+T ++ + K+ AKKG +R+SYTL
Sbjct: 85 GVIQHIGTFAEA--GTTFQAGDEVELQIDEAKRRLHARLHSAGHLLDKAVANLFPEYNLIPDKGYHFADAPYVEYKGTFVPADKRQSALKRLEDECNRLIAEGSEVTVQVVHSK----------EEVERLCGSASDS----GANPTEPV---------------RVVTVCAPLGCPCGGTHVQNTGEIGRIAIPKMSAKKGVVRISYTL 262
BLAST of mRNA_H-paniculata_contig3254.8751.1 vs. uniprot
Match: A0A7S2WSC3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSC3_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.170e-25 Identity = 78/227 (34.36%), Postives = 115/227 (50.66%), Query Frame = 1
Query: 1 GIINCGSWTMHVDMVRD--IGGLIHHFGKPSGAPPSVCTPAGESVTLTLDAAKREYHAALHSAGHAIDAAVAAVIGRGVLQPLKGYHFEDSPYVEYHGKLPDGLEKEVLIKKMNEELENLVAADLETQVEVLDPACSSSISSIYDFSSQLVCGSAEDDVRSGDMNNTEALGSGAVVGHGKHGMASRIVTIGGLACPCGGTHVQSTRQLKGTVVTKVKAKKGTLRVSY 675
G+++ V MV++ GL+ HFG S+ AG V +D R + LHSAGHA+DAA+ A+ G L P KGYHF D+PYVEY G L EK+ L +++ EL++++ + ++V L SA + + N GA++ R+V +GG CPCGGTHV + +L+ VT++KAKKGT++VSY
Sbjct: 98 GVLSFPGGEFRVSMVKEDRSTGLVFHFGSMGSGSGSL--EAGTEVDARIDPEWRSVCSRLHSAGHAMDAAMTALAVSG-LTPTKGYHFPDAPYVEYAGTLA-AEEKDSLQERLTNELQSIIEKQVPSKVVYL---------------------SAPEVLELCPGANVSIFPEGAMI---------RVVNVGGCWCPCGGTHVGNASELERVTVTRIKAKKGTVKVSY 290
BLAST of mRNA_H-paniculata_contig3254.8751.1 vs. uniprot
Match: A0A7S2HP03_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HP03_9STRA) HSP 1 Score: 107 bits (266), Expect = 2.380e-24 Identity = 70/185 (37.84%), Postives = 99/185 (53.51%), Query Frame = 1
Query: 124 SVTLTLDAAKREYHAALHSAGHAIDAAVAAVIGRGVLQPLKGYHFEDSPYVEY-HGKLPDGLEKEVLIKKMNEELENLVAADLETQVEVLDPACSSSISSIYDFSSQLVCGSAEDDVRSGDMNNTEALGSGAVVGHGKHGMASRIVTIGGLACPCGGTHVQSTRQLKGTVVTKVKAKKGTLRVSY 675
+ TL++DAA+RE +A HSAGH +D+A+ +G +L P KGYHF D PYVEY +GK D E++ ++ ++N+E E L+ D+ T + C ++D + ++N T +V RIV I CPCGGTHV ST L+G VT +K KKG LRV Y
Sbjct: 122 TYTLSIDAARRENLSAFHSAGHLVDSAIYR-LGYSMLVPKKGYHFTDGPYVEYGNGKEIDQAERKTIVSRLNQEFETLIDQDIPTTI----------------------CMMVKEDAEA-ELNRTANNFDFSVF----RDPQVRIVGIANFKCPCGGTHVASTSDLRGFEVTGIKMKKGDLRVKY 278
BLAST of mRNA_H-paniculata_contig3254.8751.1 vs. uniprot
Match: A0A0D2UDV3_CAPO3 (Alanyl-tRNA synthetase n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UDV3_CAPO3) HSP 1 Score: 103 bits (258), Expect = 4.100e-23 Identity = 82/223 (36.77%), Postives = 116/223 (52.02%), Query Frame = 1
Query: 34 VDMVRDIGG--LIHH---FGKPSGAPPSVCTP-AGESVTLTLDAAKREYHAALHSAGHAIDAAVAAVIGRGVLQPLKGYHFEDSPYVEYHGKLPDGLEKEVLIKKMNEELENLVAADLETQVEVLDPACSSSISSIYDFSSQLVCGSAEDDVRSGDMNNTEALGSGAVVGHGKHGMASRIVTIGGLACPCGGTHVQSTRQLKGTVVTKVKAKKGTLRVSYTLS 684
VD+ D G ++HH FG ++ T AG VT+ +D +KR HA LHSAGH +D+AV +G L P KGYHF D P VEY G+L + ++ L +N EL+ L+A + QV+ + + S + ++ + E +E L + A R+V IGG+ CPCGGTHV+S L+ VTKVK KGTL+V Y +S
Sbjct: 84 VDVRADKGAAAVVHHYGSFGSQDLDDAALATASAGAPVTIHVDESKRRLHARLHSAGHLLDSAVRN-LGHTGLVPSKGYHFPDGPNVEYLGELEQTV-RDGLPAALNIELQRLIATGGDVQVKYVPTSTLEGGGSGHSLAAPSAVPAQE---------TSEPLRYDSPD-------AVRMVNIGGVECPCGGTHVKSIGDLQNVKVTKVKRAKGTLKVYYEVS 288
BLAST of mRNA_H-paniculata_contig3254.8751.1 vs. uniprot
Match: A0A7S2G7E6_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2G7E6_9EUKA) HSP 1 Score: 98.2 bits (243), Expect = 3.940e-21 Identity = 70/188 (37.23%), Postives = 99/188 (52.66%), Query Frame = 1
Query: 118 GESVTLTLDAAKREYHAALHSAGHAIDAAVAAVIGRGVLQPLKGYHFEDSPYVEYHGKLPDGLEKEVLIKKMNEELENLVAADLETQVEVLDPACSSSISSIYDFSSQLVCGSAEDDVRSGDMNNTEALGSGAVVGHGKHGMASRIVTIGGLACPCGGTHVQSTRQLKGTVVTKVKAKKGTLRVSYTL 681
G+SVT T+D A R +A +HSAGH ID VA + L+P KGYHF YVEY GKL + E++ L+ K+ ++ L+ L T+V +D +S+L G AL + GK + R+V++GG CPCGGTHV T++LKG V VK+K R+SY++
Sbjct: 107 GDSVTCTVDEASRRKNARVHSAGHLID--VAMTNAKCNLRPTKGYHFTPGSYVEYDGKL-EAAERDALLPKLQASMDELIGQALPTKVLTVD-------------ASEL-----------GQHCPPNALPEDRAL-WGKGWV--RVVSVGGQGCPCGGTHVYDTKELKGVKVEAVKSKGKITRISYSM 264 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3254.8751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3254.8751.1 >prot_H-paniculata_contig3254.8751.1 ID=prot_H-paniculata_contig3254.8751.1|Name=mRNA_H-paniculata_contig3254.8751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp MHVDMVRDIGGLIHHFGKPSGAPPSVCTPAGESVTLTLDAAKREYHAALHback to top mRNA from alignment at H-paniculata_contig3254:1371..4895+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3254.8751.1 ID=mRNA_H-paniculata_contig3254.8751.1|Name=mRNA_H-paniculata_contig3254.8751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3525bp|location=Sequence derived from alignment at H-paniculata_contig3254:1371..4895+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3254:1371..4895+ >mRNA_H-paniculata_contig3254.8751.1 ID=mRNA_H-paniculata_contig3254.8751.1|Name=mRNA_H-paniculata_contig3254.8751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig3254:1371..4895+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |