mRNA_H-paniculata_contig32493.8741.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32493.8741.1
Unique NamemRNA_H-paniculata_contig32493.8741.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig32493.8741.1 vs. uniprot
Match: D7FU67_ECTSI (Glucose-6-phosphate isomerase, cytosolic n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU67_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 8.100e-42
Identity = 73/103 (70.87%), Postives = 93/103 (90.29%), Query Frame = 1
Query:    1 HKKRIGDKHLKDVMQDTERSLSLSAEYEGTILDFSRMNVSQLTMKLLMDFAKRQGLKEKISAMYNGEKINNTEDRAVLHVALRTNKNDPPIMVDGVNVVKQVY 309
            H+KRI +KHLKDVM   +RSL+LSAE+EGTILD+SRMNVSQLTMKLL+D AKRQ L ++I+AM+ GEKINNTE+RAVLHVALR++++DPPI VD V+V++QV+
Sbjct:  158 HQKRIKNKHLKDVMALEDRSLALSAEFEGTILDYSRMNVSQLTMKLLLDLAKRQNLNKRITAMFEGEKINNTENRAVLHVALRSHRDDPPIYVDDVDVIQQVH 260          
BLAST of mRNA_H-paniculata_contig32493.8741.1 vs. uniprot
Match: A0A836C893_9STRA (Glucose-6-phosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C893_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.060e-26
Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = 1
Query:    1 HKKRIGDKHLKDVMQDTERSLSLSAEYEGTILDFSRMNVSQLTMKLLMDFAKRQGLKEKISAMYNGEKINNTEDRAVLHVALRTNKNDPPIMVDGVNVVKQVY 309
            H + I   HL+DVM D  R  +LSAE+EG+ LD+SRM V+Q TM LL   A+RQ LK KI AM  G+KIN TE RAVLH  LR+  +D PI+VDGVNVV++V+
Sbjct:   33 HARHIKRMHLRDVMGDAARCEALSAEFEGSFLDYSRMQVTQRTMDLLYALARRQNLKLKIEAMCRGDKINTTEGRAVLHTVLRSAPDDAPIVVDGVNVVEEVH 135          
BLAST of mRNA_H-paniculata_contig32493.8741.1 vs. uniprot
Match: A0A836CFZ0_9STRA (Glucose-6-phosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFZ0_9STRA)

HSP 1 Score: 110 bits (274), Expect = 5.940e-26
Identity = 57/103 (55.34%), Postives = 75/103 (72.82%), Query Frame = 1
Query:    1 HKKRIGDKHLKDVMQDTERSLSLSAEYEGTILDFSRMNVSQLTMKLLMDFAKRQGLKEKISAMYNGEKINNTEDRAVLHVALRTNKNDPPIMVDGVNVVKQVY 309
            H + I   HL+DV+    R  +LSAE+EG+ LD+SRM V+Q TM LL   A+RQ L+EKI+AM  G+K+N TE RAVLH ALR+  +D PI+VDGVNVV+ V+
Sbjct:   33 HARHIAKMHLRDVLGVASRCEALSAEFEGSFLDYSRMQVTQRTMDLLYALARRQRLREKIAAMCRGDKVNVTEGRAVLHTALRSAPDDAPIVVDGVNVVEDVH 135          
BLAST of mRNA_H-paniculata_contig32493.8741.1 vs. uniprot
Match: A0A2P6V0L1_9CHLO (Glucose-6-phosphate isomerase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0L1_9CHLO)

HSP 1 Score: 99.8 bits (247), Expect = 2.970e-22
Identity = 51/103 (49.51%), Postives = 73/103 (70.87%), Query Frame = 1
Query:    1 HKKRIGDKHLKDVMQDTERSLSLSAEYEGTILDFSRMNVSQLTMKLLMDFAKRQGLKEKISAMYNGEKINNTEDRAVLHVALRTNKNDPPIMVDGVNVVKQVY 309
            H K I   HL+D++ D ER+ +L  E+ G  +DFSR N++++TM+LL++ A+R  L+ K++AM+ GE INNTEDRAVLH ALR  + D  + VDG NVV  V+
Sbjct:   42 HTKEIESLHLRDLLLDEERTDNLIREHNGLYVDFSRQNITEVTMQLLLNLAERAKLRSKMNAMFAGEHINNTEDRAVLHAALRMPR-DEAVYVDGANVVPDVW 143          
BLAST of mRNA_H-paniculata_contig32493.8741.1 vs. uniprot
Match: A0A2P6V0P9_9CHLO (Glucose-6-phosphate isomerase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0P9_9CHLO)

HSP 1 Score: 99.8 bits (247), Expect = 3.160e-22
Identity = 51/103 (49.51%), Postives = 73/103 (70.87%), Query Frame = 1
Query:    1 HKKRIGDKHLKDVMQDTERSLSLSAEYEGTILDFSRMNVSQLTMKLLMDFAKRQGLKEKISAMYNGEKINNTEDRAVLHVALRTNKNDPPIMVDGVNVVKQVY 309
            H K I   HL+D++ D ER+ +L  E+ G  +DFSR N++++TM+LL++ A+R  L+ K++AM+ GE INNTEDRAVLH ALR  + D  + VDG NVV  V+
Sbjct:  447 HTKEIESLHLRDLLLDEERTDNLIREHNGLYVDFSRQNITEVTMQLLLNLAERAKLRSKMNAMFAGEHINNTEDRAVLHAALRMPR-DEAVYVDGANVVPDVW 548          
BLAST of mRNA_H-paniculata_contig32493.8741.1 vs. uniprot
Match: A0A250XGL0_9CHLO (Glucose-6-phosphate isomerase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XGL0_9CHLO)

HSP 1 Score: 99.4 bits (246), Expect = 4.150e-22
Identity = 53/103 (51.46%), Postives = 70/103 (67.96%), Query Frame = 1
Query:    1 HKKRIGDKHLKDVMQDTERSLSLSAEYEGTILDFSRMNVSQLTMKLLMDFAKRQGLKEKISAMYNGEKINNTEDRAVLHVALRTNKNDPPIMVDGVNVVKQVY 309
            H   I   HL+D+M D  R +SL  E EG  +DFSR  V+  T+KLL++ A+  GL+EKI  M+ GE+IN+TEDRAVLHVA R  + D  IMV+G NVV +V+
Sbjct:   93 HVAEIDKTHLRDLMADERRCMSLIKESEGLYVDFSRQRVTAETVKLLVNLAEAAGLREKIDGMFKGERINSTEDRAVLHVATRA-RRDQTIMVEGKNVVPEVW 194          
BLAST of mRNA_H-paniculata_contig32493.8741.1 vs. uniprot
Match: A0A2V3IKD9_9FLOR (Glucose-6-phosphate isomerase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKD9_9FLOR)

HSP 1 Score: 99.0 bits (245), Expect = 5.630e-22
Identity = 51/104 (49.04%), Postives = 77/104 (74.04%), Query Frame = 1
Query:    1 HKKRIGDK-HLKDVMQDTERSLSLSAEYEGTILDFSRMNVSQLTMKLLMDFAKRQGLKEKISAMYNGEKINNTEDRAVLHVALRTNKNDPPIMVDGVNVVKQVY 309
            HK+ I D+ HL++++ D ER L L+AEY+G  +D+SR  +S  T KLL++ A+   LK++I  M +G++IN TE+RAVLH ALR  K++  +M+DGVNVV+QV+
Sbjct:   82 HKESIIDQTHLRELLDDDERVLQLAAEYDGVFMDYSRQRISLETKKLLLELAEAVNLKQRIKDMVSGKRINTTENRAVLHTALRAKKSEV-VMLDGVNVVEQVH 184          
BLAST of mRNA_H-paniculata_contig32493.8741.1 vs. uniprot
Match: E1ZJE0_CHLVA (Glucose-6-phosphate isomerase n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZJE0_CHLVA)

HSP 1 Score: 97.8 bits (242), Expect = 1.440e-21
Identity = 51/103 (49.51%), Postives = 72/103 (69.90%), Query Frame = 1
Query:    1 HKKRIGDKHLKDVMQDTERSLSLSAEYEGTILDFSRMNVSQLTMKLLMDFAKRQGLKEKISAMYNGEKINNTEDRAVLHVALRTNKNDPPIMVDGVNVVKQVY 309
            H K +   HL+D++ D ER+ SL  E+ G  +DFSR NV++ TM+LL++ A+R  L+ K++AM+ GE INNTEDR+VLH ALR  + D  + VDG NVV  V+
Sbjct:   84 HTKEVESLHLRDLLVDEERTDSLVREHNGLYVDFSRQNVTETTMQLLLNLAERAKLRTKMNAMFAGEHINNTEDRSVLHTALRMPR-DEEVYVDGQNVVPDVW 185          
BLAST of mRNA_H-paniculata_contig32493.8741.1 vs. uniprot
Match: A0A7S3FRE0_9CHLO (Glucose-6-phosphate isomerase n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FRE0_9CHLO)

HSP 1 Score: 97.4 bits (241), Expect = 1.980e-21
Identity = 52/103 (50.49%), Postives = 69/103 (66.99%), Query Frame = 1
Query:    1 HKKRIGDKHLKDVMQDTERSLSLSAEYEGTILDFSRMNVSQLTMKLLMDFAKRQGLKEKISAMYNGEKINNTEDRAVLHVALRTNKNDPPIMVDGVNVVKQVY 309
            H   I + HL+ +++D ER L LS E+ G   DFSR  V+  T++LL D AK  GLKEKI  M+ GE+IN TE R+VLHVA R ++N   ++VDG NVVK V+
Sbjct:   98 HIPEIEETHLRYLLKDEERCLRLSLEHNGLYSDFSRQRVTPKTLELLFDLAKEAGLKEKIEQMFQGEQINETEHRSVLHVATRADRNQE-LIVDGKNVVKDVW 199          
BLAST of mRNA_H-paniculata_contig32493.8741.1 vs. uniprot
Match: A0A2P6TB77_CHLSO (Glucose-6-phosphate isomerase n=3 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TB77_CHLSO)

HSP 1 Score: 97.4 bits (241), Expect = 2.100e-21
Identity = 51/103 (49.51%), Postives = 71/103 (68.93%), Query Frame = 1
Query:    1 HKKRIGDKHLKDVMQDTERSLSLSAEYEGTILDFSRMNVSQLTMKLLMDFAKRQGLKEKISAMYNGEKINNTEDRAVLHVALRTNKNDPPIMVDGVNVVKQVY 309
            H K I   HL+D + D ER+ +L  E+ G  +DFSR N+++ TM+LL++ A+R  L+ K++AM+ GE INNTEDRAVLH ALR  + D  + VDG NVV  V+
Sbjct:  935 HTKEIEKLHLRDQLMDEERTDALIHEHNGLYVDFSRQNINETTMQLLLNLAERAKLRTKMNAMFAGEHINNTEDRAVLHTALRAPR-DSEVFVDGKNVVPDVW 1036          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32493.8741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU67_ECTSI8.100e-4270.87Glucose-6-phosphate isomerase, cytosolic n=1 Tax=E... [more]
A0A836C893_9STRA1.060e-2657.28Glucose-6-phosphate isomerase n=1 Tax=Tribonema mi... [more]
A0A836CFZ0_9STRA5.940e-2655.34Glucose-6-phosphate isomerase n=1 Tax=Tribonema mi... [more]
A0A2P6V0L1_9CHLO2.970e-2249.51Glucose-6-phosphate isomerase n=1 Tax=Micractinium... [more]
A0A2P6V0P9_9CHLO3.160e-2249.51Glucose-6-phosphate isomerase n=1 Tax=Micractinium... [more]
A0A250XGL0_9CHLO4.150e-2251.46Glucose-6-phosphate isomerase n=1 Tax=Chlamydomona... [more]
A0A2V3IKD9_9FLOR5.630e-2249.04Glucose-6-phosphate isomerase n=1 Tax=Gracilariops... [more]
E1ZJE0_CHLVA1.440e-2149.51Glucose-6-phosphate isomerase n=1 Tax=Chlorella va... [more]
A0A7S3FRE0_9CHLO1.980e-2150.49Glucose-6-phosphate isomerase n=1 Tax=Chloropicon ... [more]
A0A2P6TB77_CHLSO2.100e-2149.51Glucose-6-phosphate isomerase n=3 Tax=Chlorella so... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32493contigH-paniculata_contig32493:1066..2343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.8
Seed ortholog evalue6.9e-34
Seed eggNOG ortholog2880.D7FU67
KEGG rclassRC00376,RC00563
KEGG koko:K01810
KEGG ReactionR02739,R02740,R03321
KEGG Pathwayko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00001,M00004,M00114
Hectar predicted targeting categoryother localisation
EggNOG free text desc.glucose-6-phosphate isomerase activity
EggNOG OGsCOG0166@1,KOG2446@2759
Ec32 ortholog descriptionGlucose-6-phosphate isomerase, cytosolic
Ec32 orthologEc-13_003530.1
EC5.3.1.9
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons4
Model size312
Cds size312
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32493.8741.1prot_H-paniculata_contig32493.8741.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32493 1066..2343 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930003.8749712-CDS-H-paniculata_contig32493:1065..11101622930003.8749712-CDS-H-paniculata_contig32493:1065..1110Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32493 1066..1110 +
1691481106.3996608-CDS-H-paniculata_contig32493:1065..11101691481106.3996608-CDS-H-paniculata_contig32493:1065..1110Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32493 1066..1110 +
1622930003.89166-CDS-H-paniculata_contig32493:1345..14141622930003.89166-CDS-H-paniculata_contig32493:1345..1414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32493 1346..1414 +
1691481106.415636-CDS-H-paniculata_contig32493:1345..14141691481106.415636-CDS-H-paniculata_contig32493:1345..1414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32493 1346..1414 +
1622930003.910761-CDS-H-paniculata_contig32493:1879..19421622930003.910761-CDS-H-paniculata_contig32493:1879..1942Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32493 1880..1942 +
1691481106.4234638-CDS-H-paniculata_contig32493:1879..19421691481106.4234638-CDS-H-paniculata_contig32493:1879..1942Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32493 1880..1942 +
1622930003.9275482-CDS-H-paniculata_contig32493:2208..23431622930003.9275482-CDS-H-paniculata_contig32493:2208..2343Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32493 2209..2343 +
1691481106.4317932-CDS-H-paniculata_contig32493:2208..23431691481106.4317932-CDS-H-paniculata_contig32493:2208..2343Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32493 2209..2343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32493.8741.1

>prot_H-paniculata_contig32493.8741.1 ID=prot_H-paniculata_contig32493.8741.1|Name=mRNA_H-paniculata_contig32493.8741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
HKKRIGDKHLKDVMQDTERSLSLSAEYEGTILDFSRMNVSQLTMKLLMDF
AKRQGLKEKISAMYNGEKINNTEDRAVLHVALRTNKNDPPIMVDGVNVVK
QVY*
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mRNA from alignment at H-paniculata_contig32493:1066..2343+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32493.8741.1 ID=mRNA_H-paniculata_contig32493.8741.1|Name=mRNA_H-paniculata_contig32493.8741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig32493:1066..2343+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACAAGAAACGGATAGGCGACAAGCATCTGAAAGACGTCATGCAGGTATC CATTATATACACGTGTGTAAGCCAACACTTTTGTGCTGAATCATATGCTG TGTGAATTTTGCGCTCTAGTTTCATGAGCGTGGCAACATTTTGGGCACTC CATTGGAGTATGGCGATGTGATGGTCTATAAATTGGAAATGTATGTATGT CGGAAATCAAAGTGAAGTATGACCATGTTTGGGACACTAAATTGGAGCAT GGTCATCTGTTCCGGTTGATTTGTATCCAGGACACGGAGAGATCGCTATC GTTGTCTGCGGAGTACGAGGGCACAATATTGGACTTCTCGAGGATGAACG TGAGCTTTACTAGATAAATGTTATACTTACTGTGGGGAGGAGAGTCATTG CAGTCCATGACACCTGCCGGTATTCTCTTTTAGCTGCAACCCCAATATTG ACACGTTGAACTGAGCAGACTGATTCCCAAGATGAAATCGACCATTGAGT CGACTAACCCGACGAATTCACAAAATGAAACCGTCAAGTTCACAACATGA AACCGTCGAGTTCACAACATGAAACCGTCGAATTCACAACATGAAACCGA CGAATTCACAACATGAAACTGACGAATTCACAACACGAAACCGATGAATG AGTGGACCGAAAAAACGACTGCTAGTCGACTAACCCGATTATTCTGCAAC CAGTTTTCGGGAGGCTGGATCCAATTTGGACCCGTTTTGTTTTGATCTGT GATTCCCTTGTGACGCGACGAGCCTTGATAGATTTCCCGTACTTCGGTTT GAACTGTGGAGCAGGTGTCACAGCTGACAATGAAGCTCTTGATGGACTTT GCCAAGCGACAGGGGCTGAAGGAGAAGGTATCGTGGCGGTAGTCTTGACG GTGTGTTAGAACGTTGGAAGAAGTTGGCTAACGTGACGTTTGAAGCCTCT ATAAAAGAAGGTTCTTATATATATATATATATTTTTTTTTTTTTGAAAAA ATCAAGTCTTGATCAGACCTGTAATAGATAACTGTTTTTTCATTTATATA AATATAGATACATCTTTGTACATACTTTGCTGTATACATATTTATCTCAT CGTATGTTGTTGGTGCCGCTGTTGGTGCTTGCTGCTGGTGAAGATTTCGG CCATGTACAACGGGGAAAAGATCAACAATACCGAGGATCGAGCTGTGCTT CACGTTGCTCTTCGCACGAACAAGAACGATCCACCGATCATGGTGGATGG GGTCAACGTTGTCAAACAGGTATATTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig32493:1066..2343+

>mRNA_H-paniculata_contig32493.8741.1 ID=mRNA_H-paniculata_contig32493.8741.1|Name=mRNA_H-paniculata_contig32493.8741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig32493:1066..2343+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACAAGAAACGGATAGGCGACAAGCATCTGAAAGACGTCATGCAGCACAA
GAAACGGATAGGCGACAAGCATCTGAAAGACGTCATGCAGGACACGGAGA
GATCGCTATCGTTGTCTGCGGAGTACGAGGGCACAATATTGGACTTCTCG
AGGATGAACGACACGGAGAGATCGCTATCGTTGTCTGCGGAGTACGAGGG
CACAATATTGGACTTCTCGAGGATGAACGTGTCACAGCTGACAATGAAGC
TCTTGATGGACTTTGCCAAGCGACAGGGGCTGAAGGAGAAGGTGTCACAG
CTGACAATGAAGCTCTTGATGGACTTTGCCAAGCGACAGGGGCTGAAGGA
GAAGATTTCGGCCATGTACAACGGGGAAAAGATCAACAATACCGAGGATC
GAGCTGTGCTTCACGTTGCTCTTCGCACGAACAAGAACGATCCACCGATC
ATGGTGGATGGGGTCAACGTTGTCAAACAGGTATATTAGATTTCGGCCAT
GTACAACGGGGAAAAGATCAACAATACCGAGGATCGAGCTGTGCTTCACG
TTGCTCTTCGCACGAACAAGAACGATCCACCGATCATGGTGGATGGGGTC
AACGTTGTCAAACAGGTATATTAG
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