mRNA_H-paniculata_contig32468.8736.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32468.8736.1
Unique NamemRNA_H-paniculata_contig32468.8736.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig32468.8736.1 vs. uniprot
Match: D7FGX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX0_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 1.520e-28
Identity = 55/74 (74.32%), Postives = 69/74 (93.24%), Query Frame = 1 
Query:    1 DGFDVAGSFLLRTLAKPSLNIDLALKIPAECLVARDALNHRYLDKRALYAGHLAKSALSKEEGTVGTLVDKVEV 222
            DGFDVAGSFLLR+LAKPSLN+DLAL++P+EC+V+RD+LNHRYLDKRALYAGH+AK+A+    G++G LVDKVE+
Sbjct:  179 DGFDVAGSFLLRSLAKPSLNVDLALRMPSECIVSRDSLNHRYLDKRALYAGHVAKTAMDAA-GSLGKLVDKVEL 251
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BLAST of mRNA_H-paniculata_contig32468.8736.1 vs. uniprot
Match: A0A6H5JEV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV9_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 3.850e-28
Identity = 55/74 (74.32%), Postives = 68/74 (91.89%), Query Frame = 1 
Query:    1 DGFDVAGSFLLRTLAKPSLNIDLALKIPAECLVARDALNHRYLDKRALYAGHLAKSALSKEEGTVGTLVDKVEV 222
            +GFDVAGSFLLR+LAKPSLN+DLAL++P+EC+V+RD+LNHRYLDKRALYAGHLAK+A+    G +G LVDKVE+
Sbjct:  184 NGFDVAGSFLLRSLAKPSLNVDLALRMPSECIVSRDSLNHRYLDKRALYAGHLAKTAMDAA-GALGKLVDKVEL 256
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BLAST of mRNA_H-paniculata_contig32468.8736.1 vs. uniprot
Match: A0A2R5G2X0_9STRA (Nucleolar protein 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G2X0_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.280e-14
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 DGFDVAGSFLLRTLAKPSLNIDLALKIPAECLVARDALNHRYLDKRALYAGHLAKSALSKEEGTVGT 201
            +  DV GS+LL T+ KPS  +DLA+++PA+C   +D LNHRYLDKR LY G LAKS   K++    T
Sbjct:  192 EAVDVVGSYLLGTVTKPSRTVDLAIRMPADCFKRKDYLNHRYLDKRRLYLGVLAKSLAKKKDLVAAT 258
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BLAST of mRNA_H-paniculata_contig32468.8736.1 vs. uniprot
Match: L1JNQ1_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JNQ1_GUITC)

HSP 1 Score: 68.6 bits (166), Expect = 8.990e-12
Identity = 29/53 (54.72%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:   10 DVAGSFLLRTLAKPSLNIDLALKIPAECLVARDALNHRYLDKRALYAGHLAKS 168
            ++ GSFLLRTL KP LN+D+A+++PA+CL A+D LN R++ KR +Y  H+AK+
Sbjct:  170 ELVGSFLLRTLVKPDLNVDMAVEMPADCLHAKDFLNGRFMYKRNMYLSHIAKA 222
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BLAST of mRNA_H-paniculata_contig32468.8736.1 vs. uniprot
Match: A0A7S3ZGA4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZGA4_9EUKA)

HSP 1 Score: 61.6 bits (148), Expect = 1.460e-10
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:   13 VAGSFLLRTLAKPSLNIDLALKIPAECLVARDALNHRYLDKRALYAGHLAKSALSKE 183
            V GS++LR +AKP  N+DLAL+IP++ L+ +D LN++YL KRA YA  +A++  S E
Sbjct:   22 VVGSYILRVVAKPVTNVDLALEIPSDSLMQKDYLNYKYLAKRARYAEAVAEALKSHE 78
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BLAST of mRNA_H-paniculata_contig32468.8736.1 vs. uniprot
Match: A0A401PG27_SCYTO (Nucleolar protein 6 n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401PG27_SCYTO)

HSP 1 Score: 64.3 bits (155), Expect = 2.570e-10
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:   13 VAGSFLLRTLAKPSLNIDLALKIPAECLVARDALNHRYLDKRALYAGHLA 162
            V GS+LL T AKP +N+D+A+ +PAE L A+D LN RYL KRALY  H+A
Sbjct:  264 VIGSYLLGTCAKPEINVDVAVTMPAEILQAKDNLNQRYLRKRALYLAHIA 313
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BLAST of mRNA_H-paniculata_contig32468.8736.1 vs. uniprot
Match: S8E1Q7_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8E1Q7_9LAMI)

HSP 1 Score: 61.2 bits (147), Expect = 3.380e-9
Identity = 30/62 (48.39%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:   10 DVAGSFLLRTLAKPSLNIDLALKIPAECLVARDALNHRYLDKRALYA----GHLAKSALSKE 183
            ++ GS+ +R++AKP +NIDL L++P EC   +D LNHRY  KR LY      +L KSAL K+
Sbjct:   70 EIGGSYSIRSVAKPDVNIDLFLRLPKECFYEKDYLNHRYHAKRFLYLCIVKKYLTKSALVKD 131
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BLAST of mRNA_H-paniculata_contig32468.8736.1 vs. uniprot
Match: UPI001455CC0A (nucleolar protein 6-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455CC0A)

HSP 1 Score: 61.2 bits (147), Expect = 3.400e-9
Identity = 30/50 (60.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   13 VAGSFLLRTLAKPSLNIDLALKIPAECLVARDALNHRYLDKRALYAGHLA 162
            V GSFLL TL +P LNIDLAL++P  C   +D LN RY  KRALY  +LA
Sbjct:  128 VVGSFLLDTLTRPDLNIDLALEMPQSCRQPKDYLNFRYHHKRALYCAYLA 177
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BLAST of mRNA_H-paniculata_contig32468.8736.1 vs. uniprot
Match: A0A8B7ARK9_ORYAF (Nucleolar protein 6 n=1 Tax=Orycteropus afer afer TaxID=1230840 RepID=A0A8B7ARK9_ORYAF)

HSP 1 Score: 60.8 bits (146), Expect = 4.640e-9
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   13 VAGSFLLRTLAKPSLNIDLALKIPAECLVARDALNHRYLDKRALYAGHLA 162
            + GS+LL T  +P +N+D+AL +P E L  +DALNHRY  KRAL+  HLA
Sbjct:  138 IVGSYLLDTCIRPDINVDMALIMPREILQDKDALNHRYFRKRALFLAHLA 187
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BLAST of mRNA_H-paniculata_contig32468.8736.1 vs. uniprot
Match: A0A8B7ALI9_ORYAF (Nucleolar protein 6 n=2 Tax=Orycteropus afer afer TaxID=1230840 RepID=A0A8B7ALI9_ORYAF)

HSP 1 Score: 60.8 bits (146), Expect = 4.640e-9
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   13 VAGSFLLRTLAKPSLNIDLALKIPAECLVARDALNHRYLDKRALYAGHLA 162
            + GS+LL T  +P +N+D+AL +P E L  +DALNHRY  KRAL+  HLA
Sbjct:  138 IVGSYLLDTCIRPDINVDMALIMPREILQDKDALNHRYFRKRALFLAHLA 187
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32468.8736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGX0_ECTSI1.520e-2874.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEV9_9PHAE3.850e-2874.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2R5G2X0_9STRA3.280e-1452.24Nucleolar protein 6 n=1 Tax=Hondaea fermentalgiana... [more]
L1JNQ1_GUITC8.990e-1254.72Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A7S3ZGA4_9EUKA1.460e-1050.88Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A401PG27_SCYTO2.570e-1060.00Nucleolar protein 6 n=1 Tax=Scyliorhinus torazame ... [more]
S8E1Q7_9LAMI3.380e-948.39Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]
UPI001455CC0A3.400e-960.00nucleolar protein 6-like n=1 Tax=Asterias rubens T... [more]
A0A8B7ARK9_ORYAF4.640e-954.00Nucleolar protein 6 n=1 Tax=Orycteropus afer afer ... [more]
A0A8B7ALI9_ORYAF4.640e-954.00Nucleolar protein 6 n=2 Tax=Orycteropus afer afer ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32468contigH-paniculata_contig32468:1459..1683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue8e-24
Seed eggNOG ortholog2880.D7FGX0
Preferred nameNOL6
KEGG koko:K08018,ko:K14544
KEGG Pathwayko03008,ko04010,ko04015,ko04530,map03008,map04010,map04015,map04530
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000462,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030628,GO:0030684,GO:0030686,GO:0031503,GO:0031974,GO:0031981,GO:0032040,GO:0032545,GO:0032991,GO:0033036,GO:0034456,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0036002,GO:0042254,GO:0042274,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0089701,GO:0090304,GO:0097064,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.tRNA export from nucleus
EggNOG OGsKOG2054@1,KOG2054@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930003.407545-CDS-H-paniculata_contig32468:1458..16831622930003.407545-CDS-H-paniculata_contig32468:1458..1683Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32468 1459..1683 -
1691481106.1915956-CDS-H-paniculata_contig32468:1458..16831691481106.1915956-CDS-H-paniculata_contig32468:1458..1683Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32468 1459..1683 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32468.8736.1prot_H-paniculata_contig32468.8736.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32468 1459..1683 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32468.8736.1

>prot_H-paniculata_contig32468.8736.1 ID=prot_H-paniculata_contig32468.8736.1|Name=mRNA_H-paniculata_contig32468.8736.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
DGFDVAGSFLLRTLAKPSLNIDLALKIPAECLVARDALNHRYLDKRALYA
GHLAKSALSKEEGTVGTLVDKVEV*
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mRNA from alignment at H-paniculata_contig32468:1459..1683-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32468.8736.1 ID=mRNA_H-paniculata_contig32468.8736.1|Name=mRNA_H-paniculata_contig32468.8736.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=225bp|location=Sequence derived from alignment at H-paniculata_contig32468:1459..1683- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGATTCGACGTCGCAGGGAGCTTCTTGCTCCGTACCCTGGCAAAGCC
CAGCCTCAACATTGACCTCGCCCTCAAAATACCTGCCGAATGTCTGGTGG
CGAGGGATGCGCTGAACCATCGCTACCTGGACAAACGAGCCCTCTATGCT
GGGCACTTGGCGAAGTCTGCTTTGAGCAAGGAAGAAGGGACCGTCGGCAC
ACTCGTCGATAAAGTCGAGGTATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig32468:1459..1683-

>mRNA_H-paniculata_contig32468.8736.1 ID=mRNA_H-paniculata_contig32468.8736.1|Name=mRNA_H-paniculata_contig32468.8736.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig32468:1459..1683- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGATTCGACGTCGCAGGGAGCTTCTTGCTCCGTACCCTGGCAAAGCC
CAGCCTCAACATTGACCTCGCCCTCAAAATACCTGCCGAATGTCTGGTGG
CGAGGGATGCGCTGAACCATCGCTACCTGGACAAACGAGCCCTCTATGCT
GGGCACTTGGCGAAGTCTGCTTTGAGCAAGGAAGAAGGGACCGTCGGCAC
ACTCGTCGATAAAGTCGAGGTATGAGATGGATTCGACGTCGCAGGGAGCT
TCTTGCTCCGTACCCTGGCAAAGCCCAGCCTCAACATTGACCTCGCCCTC
AAAATACCTGCCGAATGTCTGGTGGCGAGGGATGCGCTGAACCATCGCTA
CCTGGACAAACGAGCCCTCTATGCTGGGCACTTGGCGAAGTCTGCTTTGA
GCAAGGAAGAAGGGACCGTCGGCACACTCGTCGATAAAGTCGAGGTATGA
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