mRNA_H-paniculata_contig3240.8723.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3240.8723.1
Unique NamemRNA_H-paniculata_contig3240.8723.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3240.8723.1 vs. uniprot
Match: D7FIT5_ECTSI (YihA3, YihA/EngB-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIT5_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.350e-17
Identity = 35/44 (79.55%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 STLVNALSGLHPKKGPAAASDRAGWTELVGFYQVGKKPPEMTLV 132
            STLVNALSG+HP++GPA+ SDRAGWT+LVGFYQVGKKPP +T+V
Sbjct:  212 STLVNALSGIHPRRGPASTSDRAGWTDLVGFYQVGKKPPVLTMV 255
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BLAST of mRNA_H-paniculata_contig3240.8723.1 vs. uniprot
Match: A0A836CEK3_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEK3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.250e-13
Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 STLVNALSGLHPKKGPAAASDRAGWTELVGFYQVGKKPPEMTLV 132
            STLVNAL+G+HP++G A  S+RAGWT+ V FYQ+GKKPP +TLV
Sbjct:  126 STLVNALAGIHPRQGLAGVSERAGWTDFVSFYQIGKKPPVLTLV 169
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BLAST of mRNA_H-paniculata_contig3240.8723.1 vs. uniprot
Match: A0A7S3M560_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M560_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.920e-11
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 STLVNALSGLHPKKGPAAASDRAGWTELVGFYQVGKKPPEMTL 129
            STLVNA+ G+ P KGPA  S+RAGWT+ + FYQ+GKKPP MTL
Sbjct:  161 STLVNAMIGVLPSKGPAKVSERAGWTDQICFYQLGKKPPVMTL 203
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BLAST of mRNA_H-paniculata_contig3240.8723.1 vs. uniprot
Match: A0A4D9CU55_9STRA (EngB-type G domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CU55_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 5.320e-10
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 STLVNALSGLHPKKGPAAASDRAGWTELVGFYQVGKKPPEMTL 129
            S+LVNA++G+ P++G A  SDRAGWT+ V FYQ+G+KPP +TL
Sbjct:  104 SSLVNAVAGMVPRRGVARVSDRAGWTDAVFFYQLGRKPPVLTL 146
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BLAST of mRNA_H-paniculata_contig3240.8723.1 vs. uniprot
Match: A0A7S2WDJ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WDJ3_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.320e-8
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 STLVNALSGLHPKKGPAAASDRAGWTELVGFYQVGKKP 114
            STL+NAL G+  +KG A  SDRAGWT+ + +YQVGKKP
Sbjct:   63 STLLNALVGMPSRKGIAGVSDRAGWTDALFWYQVGKKP 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3240.8723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FIT5_ECTSI2.350e-1779.55YihA3, YihA/EngB-like GTPase n=1 Tax=Ectocarpus si... [more]
A0A836CEK3_9STRA1.250e-1368.18P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S3M560_9STRA1.920e-1167.44Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A4D9CU55_9STRA5.320e-1060.47EngB-type G domain-containing protein n=2 Tax=Mono... [more]
A0A7S2WDJ3_9STRA4.320e-863.16Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3240contigH-paniculata_contig3240:8345..8491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue6.4e-14
Seed eggNOG ortholog2880.D7FIT5
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.GTP binding
EggNOG OGsCOG0218@1,KOG2486@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930001.6578379-CDS-H-paniculata_contig3240:8344..84911622930001.6578379-CDS-H-paniculata_contig3240:8344..8491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3240 8345..8491 -
1691481105.175824-CDS-H-paniculata_contig3240:8344..84911691481105.175824-CDS-H-paniculata_contig3240:8344..8491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3240 8345..8491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3240.8723.1prot_H-paniculata_contig3240.8723.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3240 8345..8491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3240.8723.1

>prot_H-paniculata_contig3240.8723.1 ID=prot_H-paniculata_contig3240.8723.1|Name=mRNA_H-paniculata_contig3240.8723.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
STLVNALSGLHPKKGPAAASDRAGWTELVGFYQVGKKPPEMTLVCSCF*
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mRNA from alignment at H-paniculata_contig3240:8345..8491-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3240.8723.1 ID=mRNA_H-paniculata_contig3240.8723.1|Name=mRNA_H-paniculata_contig3240.8723.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at H-paniculata_contig3240:8345..8491- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCACCCTGGTCAATGCCCTCTCTGGGCTGCACCCGAAAAAAGGCCCTGC
AGCTGCGTCGGACAGGGCGGGGTGGACGGAGCTCGTGGGGTTCTACCAAG
TGGGCAAGAAGCCTCCGGAAATGACCCTGGTATGTTCATGTTTTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3240:8345..8491-

>mRNA_H-paniculata_contig3240.8723.1 ID=mRNA_H-paniculata_contig3240.8723.1|Name=mRNA_H-paniculata_contig3240.8723.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig3240:8345..8491- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCACCCTGGTCAATGCCCTCTCTGGGCTGCACCCGAAAAAAGGCCCTGC
AGCTGCGTCGGACAGGGCGGGGTGGACGGAGCTCGTGGGGTTCTACCAAG
TGGGCAAGAAGCCTCCGGAAATGACCCTGGTATGTTCATGTTTTTAGTCC
ACCCTGGTCAATGCCCTCTCTGGGCTGCACCCGAAAAAAGGCCCTGCAGC
TGCGTCGGACAGGGCGGGGTGGACGGAGCTCGTGGGGTTCTACCAAGTGG
GCAAGAAGCCTCCGGAAATGACCCTGGTATGTTCATGTTTTTAG
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