mRNA_H-paniculata_contig3237.8717.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3237.8717.1 vs. uniprot
Match: A0A6H5KRL9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRL9_9PHAE) HSP 1 Score: 502 bits (1293), Expect = 3.130e-158 Identity = 325/688 (47.24%), Postives = 402/688 (58.43%), Query Frame = 1
Query: 409 GSLFVGSFNINSEDLSQEDAKAWLAKAADAEVVALGLQECGVLPANPFPSPTNGKAVTMWREAHK-AMLQGDSSASNTSIFAEEGREPQKPSALAGLVQCIVGASKPGADDAICGD-GHRNDGMSLSPLPPLLDVPVARHNIGPRDFHLPGRPNTHTNSNGDTIMTEGGALMMTDGDNWDSPDTSFDGSDRVPKNRREMFSGVKEDGSSSTGTAIRQESYYLRGVVEAERDERLLGTIKDCIPGRELIADVAMGETPTHGKIEVKVS---PPRSRPRPASIHLGDDELPTLRSTTKRAASTGKLGAMSLGNMSHPDHTGDMHGHNHNRGHTPDSSDGDGGAG-----EEASGEA----GTRCRAVEWYGTIRLLVFVKKGLYKNLTVKTVVIPSGDKPSVVADAPEDYAKDTSPDKGAVACHLHDEDPNAKSPLNLLLVHCHLYGTNKYGVPEAVFDKYRMSQLRATDKALRATLPSSASKRMVLFGDLNFRVEMKSGEQDKDRAGNDFQAVVKVAQEGDDRALLALYNEADRLRPLLLGA-GAEREE---RGMRWQKGGLSDKDNGANNNGENEGGADVPELLKGLQDGLAAALGRGEVVRPSFTYKPGDTSHTPRRYNDKRTPSWTDRILWRGFSGDER-------QGS-------GEAREDFLPFASVPAVIVSDHEPVYCLLEL 2376
G +F+GSFNINSEDL+ + A+AWL +A A++VALGLQECG +PANPFP P NGKA+ MW+ A+ + +N + G +AG+ Q V A A G + G++ +PL S GD + + D+++ P +S V GSS T +RQESYYLRG ++ RD ++L TI DCIPGR+L+ADVAMGETPTHGKI+V +S P++ PR S E ++S G A G + D +G PD S GD GAG SG A G + VEWYGTIRLLVFV++ LYKNL VKTVVIP+GDKPSVVADAPEDYAKDTSPDKGAVAC+L EDP+++SPL L LV+CHLYGTNKYGV EAVFDKYRM+QLRA D AL+ T+P++A+ +VLFGDLNFRVEM SG +DK + GNDFQAV ++A++ + LL LYN ADRLRPLL G G R+ G R + G + D A+ A +P LL GL+DGL +L G VRP+FT+KP D S TPRRYNDKRTPSWTDRILWRGF DER +GS G R FASV VI SDHEPV+C+L L
Sbjct: 13 GDVFIGSFNINSEDLTVDAARAWLKQAEGADIVALGLQECGTVPANPFPEPINGKAIAMWQHVKDVAVPEARVECANLVGWGSRG--------MAGVAQAAVAAKLAAAHRGERAQAGATSTGVTKAPLA--------------------------CGSGGDAGQGQ------EEDDSFEEPPSS---------------GPVLLGGSSEGCTGMRQESYYLRGEIDEGRDNKMLATIADCIPGRQLVADVAMGETPTHGKIKVNISRNLSPKTPPRGVSASSAAIEAAMAAGANHESSSEGLDAAGCDGPL---DESG-----------RPDWSAGDVGAGGVTTHHNGSGSADPANGAVFKTVEWYGTIRLLVFVREDLYKNLRVKTVVIPAGDKPSVVADAPEDYAKDTSPDKGAVACYL--EDPSSESPLQLALVNCHLYGTNKYGVKEAVFDKYRMAQLRAIDLALKGTIPTAATAPLVLFGDLNFRVEMLSGTEDKAKGGNDFQAVREMAEKCNSTVLLDLYNRADRLRPLLDGEKGGCRDSPFAEGHRGETGSATGDDGRASLED-----AAMPWLLTGLRDGLGQSLTAGHPVRPTFTFKPKDASSTPRRYNDKRTPSWTDRILWRGFEDDERLDAHPQQEGSPRGQPVSGAGRAINSTFASVQEVIASDHEPVFCVLGL 624
BLAST of mRNA_H-paniculata_contig3237.8717.1 vs. uniprot
Match: A0A7S2XYE2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYE2_9STRA) HSP 1 Score: 144 bits (364), Expect = 1.200e-33 Identity = 123/347 (35.45%), Postives = 157/347 (45.24%), Query Frame = 1
Query: 1462 EWYGTIRLLVFVKKGLYKNLTVKTVVIPSGDKPSVVADAPEDYAKDTSPDKGAVACHLHDEDPNAKSPLNLLLVHCHLYGTNKYGVPEAVFDKYRMSQLRATDKALRATLPSSAS---KRMVLFGDLNFRVEMKSGEQDKDRAGNDFQ-------AVVKVAQEGDDR------------------------ALLALYNEADRLRPLLL------GAGAEREERGMRWQKGGLSDKDNGANNNGENEGGADVPELLKGLQDGLAAALGR--GEVVRPSFTYKPGDTSHTPRRYNDKRTPSWTDRILWRGFSGDERQGSGEAREDFLPFASVPAVIVSDHEPVYCLLEL 2376
EWYG IR++VFV + V+++VIP+G+K S E Y K +SPDKGAV HL ++ NLLL++ HL+GTNKY VPE FDK R QL L + L +V GD NFRV++ + +D ++ G ++Q A KV G R AL AL+ +DRL L GAG+ +E R G D L GL DGL A R G P+FT PG PR+Y KRTPSWTDR+LWRG D L FA+ P V+ SDH PV +L L
Sbjct: 3 EWYGAIRVMVFVNSEFDPDPMVESLVIPTGNKFSSYRTMSE-YEKYSSPDKGAVGVHLLNQ--------NLLLLNFHLHGTNKYKVPEEEFDKERDHQLGLVRNGLVSHLGGREQLDKASLVCIGDFNFRVQVSAAPEDCEKGGLNYQKVHQIVDAAAKVDAGGSSRFKLPPPDTEEEKSASAGEGEAAVLALRALFEGSDRLHCQLSHTQPAEGAGSVKELRS-----------------------GFD---LCYGLLDGLDEAWRRNTGCAYLPTFTLVPGQV---PRQYGPKRTPSWTDRVLWRGHP-----------HDLLAFATYPEVVASDHVPVGAVLRL 300
BLAST of mRNA_H-paniculata_contig3237.8717.1 vs. uniprot
Match: A0A7S4RCJ7_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RCJ7_9STRA) HSP 1 Score: 132 bits (331), Expect = 2.430e-28 Identity = 115/361 (31.86%), Postives = 164/361 (45.43%), Query Frame = 1
Query: 1462 EWYGTIRLLVFVKKGLYKNLTVKT---VVIPSGDKPSVVADAPE-DYAKDTSPDKGAVACHLHDEDPNAKSPLNLLLVHCHLYGTNKYGVPEAVFDKYRMSQLRATDKA------LRATLPSSASKRMVLFGDLNFRVEMKSGEQDKDRAGNDFQAVVKVAQEGDDRALLALYNEADRLRPLLLGAGAEREERGMRWQK----GGLSDKDNGANNNGE--NEGGADVPELLK-GLQDGLAAALGR----------GEVVRPSFTYKPGDTSHTPRRYNDKRTPSWTDRIL----------------WRGFSGDERQ--------------GSGEAREDFLPFASVPAVIVSDHEPVYCLLE 2373
+WYG IRLLV+VK + + K+ ++ P GDK S + +Y SPDKGA+ + L+LLL HL GTNKY VPE +FD R+ QL+ + A + S R ++ GDLNFRVE+ S E +K+R G DF AV ++ EG+ + L+ E DRL L LG R ++ R + +++ +N NG N P L + L + + R V+ P+FT+K GD PR Y +KRTPSWTDRIL W D+ GSGE + +++SDH P++CL+
Sbjct: 159 KWYGFIRLLVYVKGEVTASNISKSSIPIICPVGDKASSYSTTTHPNYKPSQSPDKGAICLAIPS--------LSLLLCSMHLAGTNKYNVPETIFDDIRIKQLQTINDACFNNTEMIVDDASFRKLRPIVLGDLNFRVEVLSSEGEKERGGKDFCAVNEILMEGETDKVRQLFLEYDRL-CLHLGHTTRRRQQQQRGKNEFIMNNVNENENHITKNGSTINVDDKSFPSLRRIDLLSDVVDLIWRESFQNKQKTSSNVILPTFTFKVGDVP--PRSYANKRTPSWTDRILVSQRLLLLLLSESDDNWICCDKDQETMHSEEEGIQQPLLVGSGEVTS----IGTNDDIVLSDHIPLHCLIH 504
BLAST of mRNA_H-paniculata_contig3237.8717.1 vs. uniprot
Match: A0A7S4R9V2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R9V2_9STRA) HSP 1 Score: 115 bits (288), Expect = 6.650e-24 Identity = 103/334 (30.84%), Postives = 148/334 (44.31%), Query Frame = 1
Query: 1534 VVIPSGDKPSVVADAPE-DYAKDTSPDKGAVACHLHDEDPNAKSPLNLLLVHCHLYGTNKYGVPEAVFDKYRMSQLRATDKA------LRATLPSSASKRMVLFGDLNFRVEMKSGEQDKDRAGNDFQAVVKVAQEGDDRALLALYNEADRLRPLLLGAGAEREERGMRWQK----GGLSDKDNGANNNGE--NEGGADVPELLK-GLQDGLAAALGR----------GEVVRPSFTYKPGDTSHTPRRYNDKRTPSWTDRIL----------------WRGFSGDERQ--------------GSGEAREDFLPFASVPAVIVSDHEPVYCLLE 2373
++ P G+K S + +Y SPDKGA+ + L+LLL HL GTNKY VPE +FD R+ QL+ + A + S R ++ GDLNFRVE+ S E +K+R G DF AV ++ EG+ + L+ E DRL L LG R ++ R + +++ +N NG N P L + L + + R V+ P+FT+K GD PR Y +KRTPSWTDRIL W D+ GSGE + +++SDH P++CL+
Sbjct: 25 IICPVGNKASSYSTTTHPNYKPSQSPDKGAICLAIPS--------LSLLLCSMHLAGTNKYNVPETIFDDIRIKQLQTINDACFNNTEMIVDDASFRKLRPIVLGDLNFRVEVLSSEGEKERGGKDFCAVNEILMEGETDKVRQLFLEYDRL-CLHLGHTTRRRQQQQRGKNEFIMNNVNENENHITKNGSTINVDDKSFPSLRRIDLLSDVVDLIWRESFQNKQKTSSNVILPTFTFKVGDVP--PRSYANKRTPSWTDRILVSQRLLLLLLSESDDNWICCDKDQETMHSEEEGIQQPLLVGSGEVTS----IGTNDDIVLSDHIPLHCLIH 343
BLAST of mRNA_H-paniculata_contig3237.8717.1 vs. uniprot
Match: A0A7S2RZY9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZY9_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 3.850e-14 Identity = 82/270 (30.37%), Postives = 119/270 (44.07%), Query Frame = 1
Query: 1090 RDERLLGTIKDCIPGRELIADVAMGETPTHGKIEVKVSPPRSRPRPASIHLGDDELPTLRSTTKRAASTGKLGAMSLGNMSHPDHTGDMHGHNHNRGHTPDSSDGDGGAGEEASGEAGTRCRAVEWYGTIRLLVFVKKGLYKNL-TVKTVVIPSGDKPSVVADAPE-----DYAKDTSPDKGAVACHLHDEDPNAKSPLNLLLVHCHLYGTNKYGVPEAVFDKYRMSQLRATDKALRATL---PSSASKR--------MVLFGDLNFRVE 1848
+D L ++ C+PG +L+ADVAMGE P + RP P + RS S G++ S H DS+D AGEE VEW+G +RL+VFV++ L +L V + V+P G K S +Y ++SPDKG +A L D+ NLL ++ HL GTN+Y E FD+ R+ QL + AL + P ++S +++ GD+NFRVE
Sbjct: 23 KDASRLFALRTCLPGFQLVADVAMGE-PAQASL---------RPLPEDV---------ARSCEVEDTSDGRVQGSEAAEESST------------LKHRQDSADSASWAGEE---------ERVEWHGFLRLMVFVREELVASLGRVASCVVPCGSKLSAFPALHHRRGEGEYPIESSPDKGGIAVWLEDQ--------NLLFLNLHLAGTNRYETGEDFFDEMRVGQLSSIATALSKFMHEQPVASSPAAEFAPHVSLLIMGDMNFRVE 244
BLAST of mRNA_H-paniculata_contig3237.8717.1 vs. uniprot
Match: A0A7S2C3F1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C3F1_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 1.230e-13 Identity = 45/129 (34.88%), Postives = 73/129 (56.59%), Query Frame = 1
Query: 1588 YAKDTSPDKGAVACHLHDEDPNAKSPLNLLLVHCHLYGTNKYGVPEAVFDKYRMSQLRATDKALRATLPSS--ASKRMVLFGDLNFRVEMKSGEQDKDRAGNDFQAVVKVAQEGDDRALLALYNEADRL 1968
Y S DKGA+A + + L+ V HLYGTNK+GVPE FD +R+S+L L+ + ++R+++ GDLNFRVE+ + +DK++ G D + V ++ + G+ + L+ E +RL
Sbjct: 6 YKDSRSTDKGAIAVVM--------PKIRLIFVCAHLYGTNKHGVPEKKFDAHRISELETVYDTLQTIYSQNYIENQRLIIMGDLNFRVEVHAAVEDKEKNGYDTKTVSRLVKTGNMAVMRELFLEYERL 126
BLAST of mRNA_H-paniculata_contig3237.8717.1 vs. uniprot
Match: A0A7S2WFW6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFW6_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 2.220e-8 Identity = 63/187 (33.69%), Postives = 81/187 (43.32%), Query Frame = 1
Query: 1834 NFRVEMKSGEQDKDRAGNDFQAVVKVAQEGDDRALLA-LYNEADRLRPLLLGAGAEREERGMRWQKGGLSDKDNGANNNGENEGGADVPELLKGLQDGLA-----AALGRGEVVRPSFTYKPGDTSHTPRRYNDKRTPSWTDRILWRGFSGDERQGSGEAREDFLPFASVPAVIVSDHEPVYCLLEL 2376
NFRVEM ++K + G DF+ V KVA GD AL L+ DRL LL G +P LLK DG A+ G + P+F + T PR Y +KRTPSWTDRILWR +G+ E ++S+ V+ SDHEPV L +
Sbjct: 1 NFRVEMFPEAENKKKGGKDFKEVEKVAS-GDSWALQRDLFLRFDRLHRLLEGLSP------------------------------FPLPVLLKECVDGHMLHFQHASPPGGRKMPPTFPFPVAATF--PRSYKNKRTPSWTDRILWR---------TGKGAEACSWYSSLREVVASDHEPVAARLRV 145
BLAST of mRNA_H-paniculata_contig3237.8717.1 vs. uniprot
Match: A0A7S2UUL2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUL2_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 2.580e-8 Identity = 41/100 (41.00%), Postives = 51/100 (51.00%), Query Frame = 1
Query: 2083 GADVPELLKGLQDGLAAALGRGEVVR--PSFTYKPGDTSHTPRRYNDKRTPSWTDRILWRGFSGDERQGSGEAREDFLPFASVPAVIVSDHEPVYCLLEL 2376
GA LL GLQD L A + P+FT P PR Y +KRTPSWTDRILWRG +D + F + P +++SDH PV +L L
Sbjct: 3 GASRGNLLHGLQDCLDVAWEAQPHLAFLPTFTLVP--RRGPPRHYGNKRTPSWTDRILWRGHP-----------QDLVAFHTFPEIVISDHIPVAAVLCL 89
BLAST of mRNA_H-paniculata_contig3237.8717.1 vs. uniprot
Match: A0A7S3UPQ6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPQ6_HETAK) HSP 1 Score: 59.3 bits (142), Expect = 1.200e-5 Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1
Query: 415 LFVGSFNINSEDLSQEDAKAWLAKAA--DAEVVALGLQECGVLPANPFPSPTNGK 573
LFVGSFNIN+ L++EDA+ WL A +V+ALG QECG +P +P+P N K
Sbjct: 12 LFVGSFNINAAQLTEEDARIWLQDALTHQPDVIALGFQECGTMPDVNYPNPRNFK 66 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3237.8717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3237.8717.1 >prot_H-paniculata_contig3237.8717.1 ID=prot_H-paniculata_contig3237.8717.1|Name=mRNA_H-paniculata_contig3237.8717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=668bp MSGICANATRQGSLFVGSFNINSEDLSQEDAKAWLAKAADAEVVALGLQEback to top mRNA from alignment at H-paniculata_contig3237:3759..18414+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3237.8717.1 ID=mRNA_H-paniculata_contig3237.8717.1|Name=mRNA_H-paniculata_contig3237.8717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=14656bp|location=Sequence derived from alignment at H-paniculata_contig3237:3759..18414+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3237:3759..18414+ >mRNA_H-paniculata_contig3237.8717.1 ID=mRNA_H-paniculata_contig3237.8717.1|Name=mRNA_H-paniculata_contig3237.8717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4008bp|location=Sequence derived from alignment at H-paniculata_contig3237:3759..18414+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |