mRNA_H-paniculata_contig3233.8709.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3233.8709.1
Unique NamemRNA_H-paniculata_contig3233.8709.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3233.8709.1 vs. uniprot
Match: D7G6E4_ECTSI (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6E4_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 4.660e-60
Identity = 101/157 (64.33%), Postives = 116/157 (73.89%), Query Frame = 1 
Query:    7 GTPNGLDASPKQRANIAEAVNALTALNPTTDIATSELATGMWNLVYNTTPGASGGKLGPFVARVQQEVDIAKGLYVNYVTVGPLTGRLEATWEIENSMQWKV--SPIVPSCFPLNWAKR-----GLWTLSYLDQDMRILTVRELEREIGNLYVLTRA 456
            GT NGL A+P+QR  I++A+N L A NPT DI TSELATG W+L+Y TTPGASGGKLGPF+  VQQEVDIA+GLYVNYV +GPLTGRLEATW++ N  QWKV    I    F     K      GLWTLSYLD DMR+LT R LER+ GN+YVL RA
Sbjct:   72 GTSNGLKATPQQRDAISKAINGLAAANPTKDITTSELATGTWDLIYTTTPGASGGKLGPFIGEVQQEVDIAEGLYVNYVRLGPLTGRLEATWDVVNKSQWKVVFKSIAFLLFGQQLVKNELDQAGLWTLSYLDDDMRVLTARSLERDTGNVYVLARA 228
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BLAST of mRNA_H-paniculata_contig3233.8709.1 vs. uniprot
Match: K8Z6W7_NANGC (PAP_fibrillin domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z6W7_NANGC)

HSP 1 Score: 112 bits (279), Expect = 1.190e-27
Identity = 70/168 (41.67%), Postives = 95/168 (56.55%), Query Frame = 1 
Query:    4 KGTPNGLDASPKQRANIAEAVNALTALNPTTDIATSELATGMWNLVYNTTPGASGGKLGPFVARVQQEVDIAKGLYVNYVTV--GPLTGRLEATWEIENSMQWKVS-----------PIVPSCFPLNWAKRGLWTLSYLDQDMRILTVRELERE-----IGNLYVLTR 453
            K   NGL A+   +A I    + L   NPT +IATS+   G W LVY +T G S GKLGPFV +V Q++D A G YVN+V +  G + G L ATWE++ + +WKV            P+V    PL+  + G W L+Y+D+D+RILT   L  E     + N+YVL R
Sbjct:   75 KNKDNGLKATESDKAKILSLASELIKRNPTKNIATSDKVDGTWRLVYTSTSGGSAGKLGPFVGQVLQKIDTAGGDYVNFVRLFGGLVEGALVATWEVKGANEWKVIFQDITFRVFGIPLVDKK-PLS-GQAGQWKLTYVDEDLRILTAAALTNEGKPAKVSNIYVLRR 240
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BLAST of mRNA_H-paniculata_contig3233.8709.1 vs. uniprot
Match: A0A7S4DWF7_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DWF7_9EUKA)

HSP 1 Score: 105 bits (262), Expect = 4.690e-25
Identity = 66/161 (40.99%), Postives = 91/161 (56.52%), Query Frame = 1 
Query:    1 SKGTPNGLDASPKQRANIAEAVNALTALNPTTDIATSELATGMWNLVYNTTPGASGGKLGPFVARVQQEVDIAKGLYVNYVTV--GPLTGRLEATWEIENSMQWKVS--PIVPSCFPLNWAKR-----GLWTLSYLDQDMRIL-TVRELEREIGNLYVLTR 453
            SKGT NG+DASP +R  IAE +  L A NPT  + +S L +G W L+Y T  G+S GK+GPFV  V Q V++  G YVN V++  G   G L ATW+  +   WKV    I    F +   ++     G W ++YLD D R+L  +    +E  N+YVL +
Sbjct:   88 SKGTNNGVDASPARREEIAELLQELEAANPTRKLTSSPLISGSWKLLYTTNDGSSAGKIGPFVGDVVQNVELQDGEYVNIVSLANGAFRGVLTATWDNVSDKLWKVKFKDIKLELFGVVLQEKELPATGTWRMTYLDDDFRVLYAMGGKNQEKENVYVLAK 248
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3233.8709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G6E4_ECTSI4.660e-6064.33PAP_fibrillin domain-containing protein n=2 Tax=Ec... [more]
K8Z6W7_NANGC1.190e-2741.67PAP_fibrillin domain-containing protein n=3 Tax=Mo... [more]
A0A7S4DWF7_9EUKA4.690e-2540.99Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3233contigH-paniculata_contig3233:14099..15688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score202.2
Seed ortholog evalue1.7e-49
Seed eggNOG ortholog2880.D7G6E4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PAP_fibrillin
EggNOG OGs2DXWT@1,2S6TC@2759
Ec32 ortholog descriptionPlastid lipid-associated protein/fibrillin conserved domain
Ec32 orthologEc-10_001550.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size459
Cds size459
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3233.8709.1prot_H-paniculata_contig3233.8709.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3233 14099..15688 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929999.301075-CDS-H-paniculata_contig3233:14098..142191622929999.301075-CDS-H-paniculata_contig3233:14098..14219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3233 14099..14219 -
1691481104.0613496-CDS-H-paniculata_contig3233:14098..142191691481104.0613496-CDS-H-paniculata_contig3233:14098..14219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3233 14099..14219 -
1622929999.3165364-CDS-H-paniculata_contig3233:14768..149821622929999.3165364-CDS-H-paniculata_contig3233:14768..14982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3233 14769..14982 -
1691481104.0737383-CDS-H-paniculata_contig3233:14768..149821691481104.0737383-CDS-H-paniculata_contig3233:14768..14982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3233 14769..14982 -
1622929999.3303466-CDS-H-paniculata_contig3233:15564..156881622929999.3303466-CDS-H-paniculata_contig3233:15564..15688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3233 15565..15688 -
1691481104.0818994-CDS-H-paniculata_contig3233:15564..156881691481104.0818994-CDS-H-paniculata_contig3233:15564..15688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3233 15565..15688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3233.8709.1

>prot_H-paniculata_contig3233.8709.1 ID=prot_H-paniculata_contig3233.8709.1|Name=mRNA_H-paniculata_contig3233.8709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
SKGTPNGLDASPKQRANIAEAVNALTALNPTTDIATSELATGMWNLVYNT
TPGASGGKLGPFVARVQQEVDIAKGLYVNYVTVGPLTGRLEATWEIENSM
QWKVSPIVPSCFPLNWAKRGLWTLSYLDQDMRILTVRELEREIGNLYVLT
RA*
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mRNA from alignment at H-paniculata_contig3233:14099..15688-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3233.8709.1 ID=mRNA_H-paniculata_contig3233.8709.1|Name=mRNA_H-paniculata_contig3233.8709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1590bp|location=Sequence derived from alignment at H-paniculata_contig3233:14099..15688- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTAAAGGCACTCCCAATGGCCTCGATGCTTCTCCAAAACAGCGAGCTAA
CATCGCTGAAGCGGTCAACGCTCTCACCGCTCTCAATCCGACCACGGACA
TCGCCACGTCGGAGCTCGCCACTGGTATATACAATTAAATTTTGGTTGGT
TAGGGGTGAGATCGAATAGTATTAGGTACTTGGTGAAGTAAGTTTGCCAA
GCCAATGATGCTTAGTTGGTCTGTAAGGACGACCAACCACACTGGGACTG
AAACAAGGCTCAGGTTTCTTTATGAGGGCAGCAGTAGGGAATATTGGACA
ATTGTGCGAAGGCATGATCCAGCAAGACTTGGTGAGGGATTGAAGGCTTA
GGCTGTAAACTTCTTTTTAGTTGAGGATGTTGACAGTAAGCTAAGAAAAA
GTGTACACATATGTCCGCATCCGATTTCCTTGCTCCTTTACCACCTGTAC
TCCTTTCCCATGCTCATGTTCGGTAGAGAAAACAGTTCCAGGCAAAATGT
ACTCGTTAAATGCAATATTCTATGCCGTGATCTAATGAACGGTTTCAGGT
TTTCGGGGGCGTTTGCCTTCTCGTTGCCCATTTGCAAATTTACTCTGAAC
ATTATTTGACGATGCAATGAGGTAGACTAAAGTCGATCCTCTCATATGGG
GTTTGTGTGCCACCCTCCCATAAAACCTTGATGATGAGTGCTTAATCTGC
CGGTAGGAATGTGGAATTTGGTGTACAATACGACACCTGGAGCTTCTGGC
GGCAAGCTGGGCCCTTTTGTTGCGCGAGTTCAGCAGGAAGTTGATATCGC
GAAAGGCTTGTACGTGAACTACGTTACGGTCGGACCTCTCACGGGCCGGC
TTGAAGCGACGTGGGAAATCGAAAACAGCATGCAGTGGAAGGTGAGCCCT
ATAGTACCGTCATGTTTTCCGTGGTGTATGTAGGTGCTTCGGGAATTGAA
TGGAATACCTTTCATCGAATTCGTTGTTTGTCAGCGTGAAAACAACACTC
TTAGCAACGCGAAGTAAGCATCCACTACGTGCGTTTACCAACAAAGTTTA
TCCACTCCACATCAGCCGTTACCAACCGATCCAGCCTTGAAAAGGTGTTC
CCAACCTTGACCGATTTAATCACATCTTCTAACATGTACGAGCTGGATGA
CCGCCTACTTGAGCCTTGATTTTGTGGGGAGATTGGTCATTCCTTACGCG
GATCACTATTATCGTTCTTCTGTTCCAACGTGTGACGGAGGTGCAACATT
TCTCATTGCAGTACAGTTCATGTTTTGACACTCGAAATTGAATTTTCCCT
TATGCACCGACAACAGTCGACGTTTCCCACCACAATATCATCCCTTCAGG
AGTTTTCGTCAACCTTCAGGTCTGAACTTCGAACATCCACGCATCCGCCA
CCTTCTACGAAACCGCAGGTGGTGTTCCAGACGATTGCTGTCTTGTTGTG
GGGCAACTAGGTCGTGAAGATTGAACTGGGCCAAACGGGGTCTGTGGACC
TTATCCTATCTCGATCAAGACATGCGTATCTTGACAGTCCGGGAGTTGGA
ACGGGAAATCGGCAACCTGTACGTTCTCACCCGGGCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig3233:14099..15688-

>mRNA_H-paniculata_contig3233.8709.1 ID=mRNA_H-paniculata_contig3233.8709.1|Name=mRNA_H-paniculata_contig3233.8709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig3233:14099..15688- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTAAAGGCACTCCCAATGGCCTCGATGCTTCTCCAAAACAGCGAGCTAA
CATCGCTGAAGCGGTCAACGCTCTCACCGCTCTCAATCCGACCACGGACA
TCGCCACGTCGGAGCTCGCCACTGTCTAAAGGCACTCCCAATGGCCTCGA
TGCTTCTCCAAAACAGCGAGCTAACATCGCTGAAGCGGTCAACGCTCTCA
CCGCTCTCAATCCGACCACGGACATCGCCACGTCGGAGCTCGCCACTGGA
ATGTGGAATTTGGTGTACAATACGACACCTGGAGCTTCTGGCGGCAAGCT
GGGCCCTTTTGTTGCGCGAGTTCAGCAGGAAGTTGATATCGCGAAAGGCT
TGTACGTGAACTACGTTACGGTCGGACCTCTCACGGGCCGGCTTGAAGCG
ACGTGGGAAATCGAAAACAGCATGCAGTGGAAGGTGAGCCCTATAGTACC
GTCATGTTTTCCGAATGTGGAATTTGGTGTACAATACGACACCTGGAGCT
TCTGGCGGCAAGCTGGGCCCTTTTGTTGCGCGAGTTCAGCAGGAAGTTGA
TATCGCGAAAGGCTTGTACGTGAACTACGTTACGGTCGGACCTCTCACGG
GCCGGCTTGAAGCGACGTGGGAAATCGAAAACAGCATGCAGTGGAAGGTG
AGCCCTATAGTACCGTCATGTTTTCCATTGAACTGGGCCAAACGGGGTCT
GTGGACCTTATCCTATCTCGATCAAGACATGCGTATCTTGACAGTCCGGG
AGTTGGAACGGGAAATCGGCAACCTGTACGTTCTCACCCGGGCGTGAATT
GAACTGGGCCAAACGGGGTCTGTGGACCTTATCCTATCTCGATCAAGACA
TGCGTATCTTGACAGTCCGGGAGTTGGAACGGGAAATCGGCAACCTGTAC
GTTCTCACCCGGGCGTGA
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